HEADER DNA 09-JUN-21 7OTB TITLE RUTHENIUM POLYPRIDYL COMPLEX BOUND TO A UNIMOLECULAR CHAIR-FORM G- TITLE 2 QUADRUPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*TP*GP*GP*G)- COMPND 4 3'); COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: G-QUADRUPLEX FORMING SEQUENCE FROM THE TELOMERIC COMPND 8 REGION OF HUMAN DNA. SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS RUTHENIUM, G-QUADRUPLEX, CHAIR, TELOMERIC, DNA EXPDTA X-RAY DIFFRACTION AUTHOR K.T.MCQUAID,C.J.CARDIN,J.P.HALL,N.G.PATERSON,L.BAUMGAERTNER REVDAT 2 20-APR-22 7OTB 1 JRNL REVDAT 1 06-APR-22 7OTB 0 JRNL AUTH K.T.MCQUAID,S.TAKAHASHI,L.BAUMGAERTNER,D.J.CARDIN, JRNL AUTH 2 N.G.PATERSON,J.P.HALL,N.SUGIMOTO,C.J.CARDIN JRNL TITL RUTHENIUM POLYPYRIDYL COMPLEX BOUND TO A UNIMOLECULAR JRNL TITL 2 CHAIR-FORM G-QUADRUPLEX. JRNL REF J.AM.CHEM.SOC. V. 144 5956 2022 JRNL REFN ESSN 1520-5126 JRNL PMID 35324198 JRNL DOI 10.1021/JACS.2C00178 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 14787 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1471 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 21.2900 - 3.5600 1.00 1216 141 0.1249 0.1437 REMARK 3 2 3.5500 - 2.8200 1.00 1203 135 0.1365 0.1319 REMARK 3 3 2.8200 - 2.4700 1.00 1196 123 0.1708 0.1834 REMARK 3 4 2.4700 - 2.2400 1.00 1240 144 0.1822 0.1910 REMARK 3 5 2.2400 - 2.0800 1.00 1217 132 0.2039 0.2264 REMARK 3 6 2.0800 - 1.9600 1.00 1200 119 0.2059 0.2674 REMARK 3 7 1.9600 - 1.8600 1.00 1219 128 0.2131 0.2544 REMARK 3 8 1.8600 - 1.7800 1.00 1221 139 0.2277 0.2852 REMARK 3 9 1.7800 - 1.7100 1.00 1216 138 0.2071 0.2406 REMARK 3 10 1.7100 - 1.6500 1.00 1194 138 0.2305 0.2630 REMARK 3 11 1.6500 - 1.6000 0.99 1194 134 0.2653 0.2544 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 22 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|1 } REMARK 3 ORIGIN FOR THE GROUP (A): -5.0284 20.6576 44.8204 REMARK 3 T TENSOR REMARK 3 T11: 0.2351 T22: 0.2346 REMARK 3 T33: 0.3357 T12: 0.0152 REMARK 3 T13: 0.0222 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 4.4546 L22: 9.4666 REMARK 3 L33: 5.7125 L12: -5.8835 REMARK 3 L13: 2.7627 L23: -6.1814 REMARK 3 S TENSOR REMARK 3 S11: 0.0214 S12: -0.4183 S13: 1.0928 REMARK 3 S21: -0.4362 S22: 0.4947 S23: -0.4016 REMARK 3 S31: -0.3738 S32: -0.9766 S33: -0.6912 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|2 } REMARK 3 ORIGIN FOR THE GROUP (A): -3.8906 21.8372 48.8787 REMARK 3 T TENSOR REMARK 3 T11: 0.3720 T22: 0.3567 REMARK 3 T33: 0.3214 T12: 0.0423 REMARK 3 T13: 0.0320 T23: -0.0347 REMARK 3 L TENSOR REMARK 3 L11: 1.9997 L22: 5.8954 REMARK 3 L33: 7.3702 L12: -7.3989 REMARK 3 L13: 3.2898 L23: -4.4411 REMARK 3 S TENSOR REMARK 3 S11: -0.4382 S12: -0.2508 S13: 0.2467 REMARK 3 S21: 0.3143 S22: 0.5635 S23: 0.0936 REMARK 3 S31: -0.8641 S32: -0.3365 S33: -0.2085 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|106 } REMARK 3 ORIGIN FOR THE GROUP (A): -0.1363 11.0065 38.5556 REMARK 3 T TENSOR REMARK 3 T11: 0.1621 T22: 0.2090 REMARK 3 T33: 0.2192 T12: -0.0183 REMARK 3 T13: -0.0183 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 6.0859 L22: 8.5655 REMARK 3 L33: 6.9214 L12: -3.6872 REMARK 3 L13: -5.1532 L23: 4.9657 REMARK 3 S TENSOR REMARK 3 S11: 0.1656 S12: -0.4267 S13: -0.2504 REMARK 3 S21: -0.1088 S22: -0.0277 S23: -0.1397 REMARK 3 S31: -0.1447 S32: 0.2878 S33: -0.1710 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|3 } REMARK 3 ORIGIN FOR THE GROUP (A): -1.6421 20.6999 53.2514 REMARK 3 T TENSOR REMARK 3 T11: 0.4161 T22: 0.2804 REMARK 3 T33: 0.2679 T12: 0.0010 REMARK 3 T13: 0.0606 T23: -0.0294 REMARK 3 L TENSOR REMARK 3 L11: 6.0537 L22: 6.5529 REMARK 3 L33: 7.9285 L12: -2.0987 REMARK 3 L13: -5.7461 L23: 5.6008 REMARK 3 S TENSOR REMARK 3 S11: 0.6631 S12: -0.0232 S13: 0.7265 REMARK 3 S21: 0.0326 S22: -0.3073 S23: 0.7765 REMARK 3 S31: -0.8279 S32: -0.5308 S33: -0.3287 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|4 } REMARK 3 ORIGIN FOR THE GROUP (A): 0.4094 23.8329 60.0980 REMARK 3 T TENSOR REMARK 3 T11: 0.5231 T22: 0.4620 REMARK 3 T33: 0.2849 T12: -0.0617 REMARK 3 T13: 0.1098 T23: -0.1176 REMARK 3 L TENSOR REMARK 3 L11: 1.7493 L22: 2.1391 REMARK 3 L33: 4.0252 L12: 1.9321 REMARK 3 L13: 2.6495 L23: 2.9343 REMARK 3 S TENSOR REMARK 3 S11: -0.7584 S12: 0.5981 S13: -0.2877 REMARK 3 S21: -0.7561 S22: 1.2942 S23: -0.5542 REMARK 3 S31: -0.0842 S32: 0.5759 S33: -0.5012 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|5 } REMARK 3 ORIGIN FOR THE GROUP (A): 2.8218 19.4226 55.5578 REMARK 3 T TENSOR REMARK 3 T11: 0.4760 T22: 0.3770 REMARK 3 T33: 0.2693 T12: -0.0097 REMARK 3 T13: 0.0429 T23: -0.0990 REMARK 3 L TENSOR REMARK 3 L11: 3.1277 L22: 5.9433 REMARK 3 L33: 4.8566 L12: 0.3873 REMARK 3 L13: -3.2517 L23: -3.3523 REMARK 3 S TENSOR REMARK 3 S11: 0.4348 S12: -1.2254 S13: 1.2032 REMARK 3 S21: 1.1303 S22: 0.3676 S23: 0.2237 REMARK 3 S31: -1.6814 S32: 0.8412 S33: -0.6691 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' (RESID 6) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1145 15.2275 55.1481 REMARK 3 T TENSOR REMARK 3 T11: 0.5845 T22: 0.4297 REMARK 3 T33: 0.4273 T12: -0.0115 REMARK 3 T13: -0.1557 T23: -0.0867 REMARK 3 L TENSOR REMARK 3 L11: 6.8874 L22: 7.3290 REMARK 3 L33: 7.2494 L12: 7.0061 REMARK 3 L13: 6.8737 L23: 7.2349 REMARK 3 S TENSOR REMARK 3 S11: 0.3360 S12: -0.5054 S13: 0.5073 REMARK 3 S21: 1.7565 S22: 0.2419 S23: -0.7142 REMARK 3 S31: 0.3493 S32: 1.6132 S33: -0.6356 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' (RESID 7) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5924 11.3262 51.0559 REMARK 3 T TENSOR REMARK 3 T11: 0.3247 T22: 0.2046 REMARK 3 T33: 0.2310 T12: 0.0130 REMARK 3 T13: -0.0429 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 6.4545 L22: 7.0034 REMARK 3 L33: 6.5441 L12: -6.5086 REMARK 3 L13: 6.3467 L23: -6.6015 REMARK 3 S TENSOR REMARK 3 S11: -0.2429 S12: -0.2941 S13: -0.2287 REMARK 3 S21: 0.5869 S22: 0.5078 S23: -0.4483 REMARK 3 S31: 0.2915 S32: 0.3850 S33: -0.2957 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' (RESID 8) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3819 9.9453 50.7440 REMARK 3 T TENSOR REMARK 3 T11: 0.2792 T22: 0.2423 REMARK 3 T33: 0.2055 T12: 0.0040 REMARK 3 T13: 0.0036 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 6.6289 L22: 6.1186 REMARK 3 L33: 8.7703 L12: 1.7028 REMARK 3 L13: -0.8748 L23: -6.8020 REMARK 3 S TENSOR REMARK 3 S11: 0.2027 S12: -0.2688 S13: 0.0227 REMARK 3 S21: 0.3300 S22: -0.3669 S23: -0.6005 REMARK 3 S31: -0.0543 S32: 0.1411 S33: 0.0721 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' (RESID 9) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2127 10.8381 49.9750 REMARK 3 T TENSOR REMARK 3 T11: 0.3008 T22: 0.2200 REMARK 3 T33: 0.2013 T12: -0.0261 REMARK 3 T13: 0.0159 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 9.3358 L22: 2.0002 REMARK 3 L33: 8.8634 L12: 7.2882 REMARK 3 L13: -7.5770 L23: -9.1424 REMARK 3 S TENSOR REMARK 3 S11: 0.2550 S12: -0.5697 S13: -0.1043 REMARK 3 S21: 0.3125 S22: -0.2830 S23: -0.4833 REMARK 3 S31: -0.1936 S32: 0.3215 S33: -0.0343 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' (RESID 10) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2376 12.3705 45.9085 REMARK 3 T TENSOR REMARK 3 T11: 0.2394 T22: 0.3010 REMARK 3 T33: 0.3045 T12: 0.0400 REMARK 3 T13: 0.0317 T23: -0.0664 REMARK 3 L TENSOR REMARK 3 L11: 8.9353 L22: 5.3591 REMARK 3 L33: 4.2938 L12: 6.7713 REMARK 3 L13: 1.0433 L23: 0.4894 REMARK 3 S TENSOR REMARK 3 S11: 0.5542 S12: -0.3509 S13: -0.2536 REMARK 3 S21: 0.4924 S22: -0.1890 S23: 0.7225 REMARK 3 S31: -0.5337 S32: -0.1257 S33: -0.3179 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' (RESID 11) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6133 8.6642 43.0546 REMARK 3 T TENSOR REMARK 3 T11: 0.2504 T22: 0.2568 REMARK 3 T33: 0.3266 T12: -0.0155 REMARK 3 T13: 0.0339 T23: -0.0312 REMARK 3 L TENSOR REMARK 3 L11: 5.9106 L22: 5.9793 REMARK 3 L33: 9.9232 L12: -5.8211 REMARK 3 L13: -0.1078 L23: -1.2930 REMARK 3 S TENSOR REMARK 3 S11: -0.2391 S12: 0.8582 S13: -0.8919 REMARK 3 S21: 0.2859 S22: -0.2639 S23: 1.0129 REMARK 3 S31: -0.1985 S32: -0.1282 S33: 0.4939 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' (RESID 12) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4465 8.8892 43.1465 REMARK 3 T TENSOR REMARK 3 T11: 0.2448 T22: 0.3126 REMARK 3 T33: 0.2951 T12: 0.0267 REMARK 3 T13: 0.0003 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 4.6093 L22: 5.5436 REMARK 3 L33: 8.1686 L12: 3.8167 REMARK 3 L13: -5.4960 L23: -2.6073 REMARK 3 S TENSOR REMARK 3 S11: -0.1472 S12: -0.7726 S13: -0.4743 REMARK 3 S21: -0.0845 S22: 0.0981 S23: 0.2557 REMARK 3 S31: 1.0419 S32: -0.4532 S33: -0.0800 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' (RESID 13) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6773 8.5329 43.7876 REMARK 3 T TENSOR REMARK 3 T11: 0.2664 T22: 0.2039 REMARK 3 T33: 0.2248 T12: 0.0340 REMARK 3 T13: -0.0332 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 9.9517 L22: 4.6322 REMARK 3 L33: 2.6964 L12: 6.4137 REMARK 3 L13: -3.8754 L23: -2.1159 REMARK 3 S TENSOR REMARK 3 S11: -0.4220 S12: -0.0826 S13: -0.1800 REMARK 3 S21: -0.1594 S22: 0.0385 S23: 0.0172 REMARK 3 S31: -0.2812 S32: -0.3249 S33: 0.4129 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' (RESID 14) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2635 10.6676 44.3140 REMARK 3 T TENSOR REMARK 3 T11: 0.2515 T22: 0.2894 REMARK 3 T33: 0.2947 T12: -0.0232 REMARK 3 T13: 0.0002 T23: -0.0350 REMARK 3 L TENSOR REMARK 3 L11: 2.0005 L22: 3.2188 REMARK 3 L33: 4.4464 L12: -1.2366 REMARK 3 L13: -6.2018 L23: 0.8064 REMARK 3 S TENSOR REMARK 3 S11: 0.3023 S12: -0.6165 S13: -0.9006 REMARK 3 S21: 0.0558 S22: -0.1887 S23: -0.0489 REMARK 3 S31: -0.3243 S32: 0.2172 S33: -0.1156 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'A' (RESID 15) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5607 14.4449 44.6611 REMARK 3 T TENSOR REMARK 3 T11: 0.1934 T22: 0.2992 REMARK 3 T33: 0.2764 T12: -0.0229 REMARK 3 T13: 0.0035 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 7.0301 L22: 6.5390 REMARK 3 L33: 4.6846 L12: -2.7099 REMARK 3 L13: -4.4995 L23: 4.7068 REMARK 3 S TENSOR REMARK 3 S11: -0.0187 S12: 0.5924 S13: -0.5812 REMARK 3 S21: -0.1403 S22: -0.2021 S23: -0.1062 REMARK 3 S31: -0.1612 S32: 0.0748 S33: 0.1843 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'A' (RESID 16) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9629 19.2558 44.1435 REMARK 3 T TENSOR REMARK 3 T11: 0.2657 T22: 0.2499 REMARK 3 T33: 0.3356 T12: -0.0035 REMARK 3 T13: -0.0134 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 6.9410 L22: 2.3110 REMARK 3 L33: 6.0220 L12: 2.0061 REMARK 3 L13: -6.3999 L23: -1.7889 REMARK 3 S TENSOR REMARK 3 S11: 0.6043 S12: -0.7780 S13: -0.5797 REMARK 3 S21: 0.1563 S22: -0.3889 S23: -0.5004 REMARK 3 S31: -0.5185 S32: 0.6104 S33: -0.1232 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'A' (RESID 17) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4118 23.9849 41.4768 REMARK 3 T TENSOR REMARK 3 T11: 0.5124 T22: 0.3374 REMARK 3 T33: 0.5801 T12: -0.0831 REMARK 3 T13: -0.0110 T23: -0.0313 REMARK 3 L TENSOR REMARK 3 L11: 7.2007 L22: 5.3168 REMARK 3 L33: 2.8289 L12: 5.8354 REMARK 3 L13: 3.4212 L23: 3.2380 REMARK 3 S TENSOR REMARK 3 S11: -0.6433 S12: 0.5203 S13: -2.6827 REMARK 3 S21: -1.7300 S22: 0.1217 S23: 1.4847 REMARK 3 S31: 1.1488 S32: -0.8745 S33: 0.4935 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'A' (RESID 18) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9081 23.1993 48.1575 REMARK 3 T TENSOR REMARK 3 T11: 0.3749 T22: 0.2957 REMARK 3 T33: 0.3126 T12: -0.0077 REMARK 3 T13: -0.0178 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 8.1918 L22: 8.4969 REMARK 3 L33: 4.9832 L12: -6.8235 REMARK 3 L13: 4.4222 L23: -2.0883 REMARK 3 S TENSOR REMARK 3 S11: -0.2786 S12: 0.5396 S13: 0.2189 REMARK 3 S21: 0.9035 S22: -0.2976 S23: -0.5069 REMARK 3 S31: -0.7051 S32: 0.4183 S33: 0.5031 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'A' (RESID 19) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1055 23.7968 46.3693 REMARK 3 T TENSOR REMARK 3 T11: 0.2883 T22: 0.2541 REMARK 3 T33: 0.2677 T12: -0.0255 REMARK 3 T13: 0.0024 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 6.1687 L22: 4.3293 REMARK 3 L33: 7.6810 L12: -1.0141 REMARK 3 L13: 1.4117 L23: -5.7657 REMARK 3 S TENSOR REMARK 3 S11: -0.2644 S12: -0.4605 S13: 0.3348 REMARK 3 S21: 0.9657 S22: 0.0183 S23: -0.0941 REMARK 3 S31: -0.4914 S32: -0.1592 S33: 0.1294 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'A' (RESID 20) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7290 21.9238 41.5414 REMARK 3 T TENSOR REMARK 3 T11: 0.2583 T22: 0.2404 REMARK 3 T33: 0.2767 T12: -0.0320 REMARK 3 T13: 0.0191 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 5.0851 L22: 6.4366 REMARK 3 L33: 8.9464 L12: -5.5922 REMARK 3 L13: 4.8515 L23: -5.8968 REMARK 3 S TENSOR REMARK 3 S11: -0.3742 S12: 0.1577 S13: 0.5352 REMARK 3 S21: -0.3441 S22: 0.5587 S23: 0.4890 REMARK 3 S31: -0.7727 S32: -0.1138 S33: -0.0157 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'A' (RESID 21) REMARK 3 ORIGIN FOR THE GROUP (A): -0.0214 18.7525 37.8074 REMARK 3 T TENSOR REMARK 3 T11: 0.4228 T22: 0.3348 REMARK 3 T33: 0.2582 T12: -0.0033 REMARK 3 T13: -0.0330 T23: -0.0286 REMARK 3 L TENSOR REMARK 3 L11: 2.2710 L22: 2.9747 REMARK 3 L33: 3.0496 L12: 0.0947 REMARK 3 L13: -1.3621 L23: -2.5768 REMARK 3 S TENSOR REMARK 3 S11: -0.0567 S12: 0.1969 S13: 0.3514 REMARK 3 S21: -1.1714 S22: -0.0478 S23: 0.1867 REMARK 3 S31: -1.3423 S32: -0.1649 S33: 0.2234 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OTB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1292116403. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.5604, 1.7712 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, XDS REMARK 200 DATA SCALING SOFTWARE : XIA2, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 140815 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 21.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 17.00 REMARK 200 R MERGE (I) : 0.10060 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 11.80 REMARK 200 R MERGE FOR SHELL (I) : 0.57290 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.390 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ANNEALING: 200 UM L REMARK 280 -[RU(PHEN)2(AQPHEN)]2+, 200 UM GGGTTAGGGTTAGGGTTTGGG, AND 10 MM REMARK 280 KCL. CRYSTALLISATION: 100 UM L-[RU(PHEN)2(AQPHEN)]2+, 100 UM REMARK 280 GGGTTAGGGTTAGGGTTTGGG, 5 MM KCL, 40 MM NACL, 20 MM NA CACODYLATE REMARK 280 PH 7.0, 20% V/V MPD, 6 MM SPERMINE HYDROCHLORIDE, AND 10 MM REMARK 280 BACL2., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.98667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.99333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.99333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 75.98667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 296 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 299 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 300 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG A 2 O3' DG A 3 P -0.106 REMARK 500 DG A 2 O3' DG A 3 P -0.108 REMARK 500 DG A 3 O3' DG A 3 C3' -0.043 REMARK 500 DT A 4 O3' DT A 5 P -0.079 REMARK 500 DG A 9 O3' DT A 10 P -0.072 REMARK 500 DA A 12 O3' DG A 13 P -0.101 REMARK 500 DT A 16 O3' DT A 17 P -0.082 REMARK 500 DT A 18 O3' DG A 19 P -0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 3 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT A 4 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG A 14 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 1 O6 REMARK 620 2 DG A 2 O6 68.7 REMARK 620 3 DG A 2 O6 69.6 17.8 REMARK 620 4 DG A 8 O6 121.3 68.1 80.3 REMARK 620 5 DG A 8 O6 99.0 47.3 62.4 23.5 REMARK 620 6 DG A 9 O6 78.1 93.5 110.7 67.0 64.8 REMARK 620 7 DG A 13 O6 125.6 165.6 159.0 99.7 122.0 88.2 REMARK 620 8 DG A 14 O6 160.3 98.2 93.3 62.5 80.6 118.5 68.7 REMARK 620 9 DG A 14 O6 160.4 92.1 93.2 43.6 63.7 100.6 73.6 19.6 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 2 O6 REMARK 620 2 DG A 2 O6 21.0 REMARK 620 3 DG A 3 O6 74.3 81.0 REMARK 620 4 DG A 7 O6 109.2 129.1 66.1 REMARK 620 5 DG A 8 O6 77.2 89.9 121.2 76.8 REMARK 620 6 DG A 8 O6 55.0 72.0 98.9 75.9 25.9 REMARK 620 7 DG A 14 O6 108.7 100.5 175.0 115.7 63.7 86.1 REMARK 620 8 DG A 14 O6 105.8 104.7 164.7 100.1 45.8 70.1 19.4 REMARK 620 9 DG A 15 O6 177.8 160.7 104.0 68.8 102.8 124.4 73.1 75.4 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 103 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 3 O6 REMARK 620 2 DT A 5 O2 72.7 REMARK 620 3 DG A 7 O6 64.9 84.2 REMARK 620 4 DG A 15 O6 100.0 148.2 65.2 REMARK 620 5 DT A 16 O4 135.8 131.7 139.0 75.3 REMARK 620 6 DT A 18 O2 103.2 70.0 154.1 140.7 65.9 REMARK 620 7 DG A 19 O6 64.7 132.1 96.2 63.5 74.5 98.9 REMARK 620 8 HOH A 266 O 147.1 88.2 87.2 82.2 76.8 94.6 139.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 104 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 204 O REMARK 620 2 HOH A 250 O 170.2 REMARK 620 3 HOH A 279 O 104.7 67.2 REMARK 620 4 HOH A 289 O 53.3 123.9 65.9 REMARK 620 5 HOH A 309 O 91.1 85.8 104.1 134.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A 105 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 220 O REMARK 620 2 HOH A 222 O 128.9 REMARK 620 3 HOH A 224 O 64.7 120.4 REMARK 620 4 HOH A 244 O 69.0 129.2 110.3 REMARK 620 5 HOH A 256 O 69.2 81.5 132.7 59.9 REMARK 620 6 HOH A 297 O 122.1 93.8 59.8 116.4 167.2 REMARK 620 N 1 2 3 4 5 DBREF 7OTB A 1 21 PDB 7OTB 7OTB 1 21 SEQRES 1 A 21 DG DG DG DT DT DA DG DG DG DT DT DA DG SEQRES 2 A 21 DG DG DT DT DT DG DG DG HET K A 101 1 HET K A 102 1 HET K A 103 1 HET K A 104 1 HET BA A 105 1 HET 0K8 A 106 89 HETNAM K POTASSIUM ION HETNAM BA BARIUM ION HETNAM 0K8 RUTHENIUM BIS-(PHENANTHROLINE) 12,17-DIHYDRO- HETNAM 2 0K8 NAPHTHODIPYRIDOPHENAZINE-12,17-DIONE HETSYN 0K8 RUTHENIUM POLYPRIDYL COMPLEX FORMUL 2 K 4(K 1+) FORMUL 6 BA BA 2+ FORMUL 7 0K8 C50 H28 N8 O2 RU 2+ FORMUL 8 HOH *111(H2 O) LINK O6 DG A 1 K K A 101 1555 1555 2.59 LINK O6 A DG A 2 K K A 101 1555 1555 3.16 LINK O6 B DG A 2 K K A 101 1555 1555 2.94 LINK O6 A DG A 2 K K A 102 1555 1555 2.70 LINK O6 B DG A 2 K K A 102 1555 1555 2.58 LINK O6 DG A 3 K K A 102 1555 1555 2.84 LINK O6 DG A 3 K K A 103 1555 1555 2.84 LINK O2 DT A 5 K K A 103 1555 1555 2.85 LINK O6 DG A 7 K K A 102 1555 1555 2.71 LINK O6 DG A 7 K K A 103 1555 1555 2.81 LINK O6 A DG A 8 K K A 101 1555 1555 2.91 LINK O6 B DG A 8 K K A 101 1555 1555 3.08 LINK O6 A DG A 8 K K A 102 1555 1555 2.76 LINK O6 B DG A 8 K K A 102 1555 1555 2.73 LINK O6 DG A 9 K K A 101 1555 1555 2.60 LINK O6 DG A 13 K K A 101 1555 1555 2.68 LINK O6 A DG A 14 K K A 101 1555 1555 2.77 LINK O6 B DG A 14 K K A 101 1555 1555 2.76 LINK O6 A DG A 14 K K A 102 1555 1555 2.83 LINK O6 B DG A 14 K K A 102 1555 1555 2.65 LINK O6 DG A 15 K K A 102 1555 1555 2.78 LINK O6 DG A 15 K K A 103 1555 1555 2.94 LINK O4 DT A 16 K K A 103 1555 1555 2.77 LINK O2 DT A 18 K K A 103 1555 1555 2.87 LINK O6 DG A 19 K K A 102 1555 1555 2.71 LINK O6 DG A 19 K K A 103 1555 1555 2.89 LINK O6 A DG A 20 K K A 101 1555 1555 2.92 LINK O6 B DG A 20 K K A 101 1555 1555 2.87 LINK O6 A DG A 20 K K A 102 1555 1555 2.76 LINK O6 B DG A 20 K K A 102 1555 1555 2.91 LINK O6 DG A 21 K K A 101 1555 1555 2.82 LINK K K A 103 O HOH A 266 1555 1555 2.79 LINK K K A 104 O HOH A 204 1555 4556 3.15 LINK K K A 104 O HOH A 250 1555 1655 2.75 LINK K K A 104 O HOH A 279 1555 1655 2.30 LINK K K A 104 O HOH A 289 1555 4556 3.08 LINK K K A 104 O HOH A 309 1555 1655 2.69 LINK BA BA A 105 O HOH A 220 1555 1445 2.73 LINK BA BA A 105 O HOH A 222 1555 1555 2.67 LINK BA BA A 105 O HOH A 224 1555 1445 2.98 LINK BA BA A 105 O HOH A 244 1555 1555 3.14 LINK BA BA A 105 O HOH A 256 1555 1555 2.54 LINK BA BA A 105 O HOH A 297 1555 1555 2.79 CRYST1 29.680 29.680 113.980 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033693 0.019453 0.000000 0.00000 SCALE2 0.000000 0.038905 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008773 0.00000