HEADER HYDROLASE 12-JUN-21 7OUP TITLE STRUCTURE OF HUMAN DPP3 IN COMPLEX WITH A HYDROXYETHYLENE TRANSITION TITLE 2 STATE PEPTIDOMIMETIC COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIPEPTIDYL PEPTIDASE 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DIPEPTIDYL AMINOPEPTIDASE III,DIPEPTIDYL ARYLAMIDASE III, COMPND 5 DIPEPTIDYL PEPTIDASE III,DPP III,ENKEPHALINASE B; COMPND 6 EC: 3.4.14.4; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: ((2R,4S,5S)-5-((S)-2-AMINO-3-METHYLBUTANAMIDO)-2-BENZYL-4- COMPND 11 HYDROXY-6-METHYLHEPTANOYL)-L-PROLYL-L-TRYPTOPHAN; COMPND 12 CHAIN: F; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: PEPTIDE MIMETIC BASED ON VVFPW WITH THE PEPTIDE COMPND 15 LINKAGE BETWEEN V-2 AND F-3 REPLACED BY A (S)-HYDROXYETHYLENE GROUP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DPP3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS INHIBITOR, COMPLEX, PEPTIDASE, ZINC-HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.KUMAR,V.REITHOFER,K.GRUBER REVDAT 4 31-JAN-24 7OUP 1 REMARK REVDAT 3 15-NOV-23 7OUP 1 LINK ATOM REVDAT 2 20-OCT-21 7OUP 1 JRNL REVDAT 1 11-AUG-21 7OUP 0 JRNL AUTH J.IVKOVIC,S.JHA,C.LEMBACHER-FADUM,J.PUSCHNIG,P.KUMAR, JRNL AUTH 2 V.REITHOFER,K.GRUBER,P.MACHEROUX,R.BREINBAUER JRNL TITL EFFICIENT ENTROPY-DRIVEN INHIBITION OF DIPEPTIDYL PEPTIDASE JRNL TITL 2 III BY HYDROXYETHYLENE TRANSITION-STATE PEPTIDOMIMETICS. JRNL REF CHEMISTRY V. 27 14108 2021 JRNL REFN ISSN 0947-6539 JRNL PMID 34314529 JRNL DOI 10.1002/CHEM.202102204 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 23069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1154 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.2800 - 5.2900 0.99 2812 149 0.1598 0.1775 REMARK 3 2 5.2900 - 4.2000 0.99 2782 146 0.1531 0.2090 REMARK 3 3 4.2000 - 3.6700 0.98 2734 144 0.1826 0.2741 REMARK 3 4 3.6700 - 3.3300 0.98 2736 144 0.2098 0.2671 REMARK 3 5 3.3300 - 3.0900 0.99 2724 144 0.2534 0.3188 REMARK 3 6 3.0900 - 2.9100 0.99 2773 146 0.2672 0.3506 REMARK 3 7 2.9100 - 2.7700 0.99 2754 144 0.2744 0.3335 REMARK 3 8 2.7700 - 2.6500 0.94 2600 137 0.3012 0.3565 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.425 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.582 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5930 REMARK 3 ANGLE : 0.588 8038 REMARK 3 CHIRALITY : 0.041 865 REMARK 3 PLANARITY : 0.004 1052 REMARK 3 DIHEDRAL : 14.744 2170 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OUP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1292116469. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953730 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : BENT COLLIMATING MIRROR AND REMARK 200 TOROID REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23086 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 45.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.11650 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.70360 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.560 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3T6B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.056 M SODIUM PHOSPHATE MONOBASIC REMARK 280 MONOHYDRATE, 1.344 M POTASSIUM PHOSPHATE DIBASIC MONOHYDRATE, PH REMARK 280 8.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.66850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.79850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.66850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 52.79850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 727 REMARK 465 GLY A 728 REMARK 465 PRO A 729 REMARK 465 SER A 730 REMARK 465 GLU A 731 REMARK 465 ALA A 732 REMARK 465 PRO A 733 REMARK 465 SER A 734 REMARK 465 GLY A 735 REMARK 465 GLN A 736 REMARK 465 ALA A 737 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL F 1 C 1QI F 2 N 0.164 REMARK 500 1QI F 2 C PRO F 3 N 0.140 REMARK 500 TRP F 4 CG TRP F 4 CD1 -0.085 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP F 4 CD1 - CG - CD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 TRP F 4 NE1 - CE2 - CD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 19 31.53 -156.39 REMARK 500 ILE A 315 -66.52 -91.66 REMARK 500 SER A 317 53.17 -113.91 REMARK 500 THR A 370 105.12 -58.37 REMARK 500 PHE A 471 -168.73 -128.58 REMARK 500 SER A 500 -108.88 13.67 REMARK 500 ASP A 633 83.95 -67.61 REMARK 500 ASP A 649 31.31 -92.69 REMARK 500 GLU A 680 48.04 -84.85 REMARK 500 ASP A 707 25.67 -141.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 1QI F 2 PRO F 3 -116.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 1QI F 2 30.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 973 DISTANCE = 5.91 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 803 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 162 O REMARK 620 2 GLY A 164 O 107.9 REMARK 620 3 GLY A 167 O 86.8 91.2 REMARK 620 4 HOH A 957 O 112.1 137.0 105.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 802 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 317 O REMARK 620 2 SER A 317 OG 63.9 REMARK 620 3 GLY A 323 O 90.4 75.4 REMARK 620 4 ASP A 496 OD1 143.4 79.6 77.6 REMARK 620 5 SER A 504 OG 75.1 98.0 165.5 114.2 REMARK 620 6 HOH A 965 O 89.9 153.8 106.1 126.5 74.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 450 NE2 REMARK 620 2 HIS A 455 NE2 84.5 REMARK 620 3 GLU A 508 OE2 117.4 96.6 REMARK 620 4 HOH A 941 O 83.3 93.0 157.9 REMARK 620 5 1QI F 2 O1 116.8 137.2 103.9 56.7 REMARK 620 N 1 2 3 4 DBREF 7OUP A 1 737 UNP Q9NY33 DPP3_HUMAN 1 737 DBREF 7OUP F 1 4 PDB 7OUP 7OUP 1 4 SEQADV 7OUP ALA A 451 UNP Q9NY33 GLU 451 ENGINEERED MUTATION SEQRES 1 A 737 MET ALA ASP THR GLN TYR ILE LEU PRO ASN ASP ILE GLY SEQRES 2 A 737 VAL SER SER LEU ASP CYS ARG GLU ALA PHE ARG LEU LEU SEQRES 3 A 737 SER PRO THR GLU ARG LEU TYR ALA TYR HIS LEU SER ARG SEQRES 4 A 737 ALA ALA TRP TYR GLY GLY LEU ALA VAL LEU LEU GLN THR SEQRES 5 A 737 SER PRO GLU ALA PRO TYR ILE TYR ALA LEU LEU SER ARG SEQRES 6 A 737 LEU PHE ARG ALA GLN ASP PRO ASP GLN LEU ARG GLN HIS SEQRES 7 A 737 ALA LEU ALA GLU GLY LEU THR GLU GLU GLU TYR GLN ALA SEQRES 8 A 737 PHE LEU VAL TYR ALA ALA GLY VAL TYR SER ASN MET GLY SEQRES 9 A 737 ASN TYR LYS SER PHE GLY ASP THR LYS PHE VAL PRO ASN SEQRES 10 A 737 LEU PRO LYS GLU LYS LEU GLU ARG VAL ILE LEU GLY SER SEQRES 11 A 737 GLU ALA ALA GLN GLN HIS PRO GLU GLU VAL ARG GLY LEU SEQRES 12 A 737 TRP GLN THR CYS GLY GLU LEU MET PHE SER LEU GLU PRO SEQRES 13 A 737 ARG LEU ARG HIS LEU GLY LEU GLY LYS GLU GLY ILE THR SEQRES 14 A 737 THR TYR PHE SER GLY ASN CYS THR MET GLU ASP ALA LYS SEQRES 15 A 737 LEU ALA GLN ASP PHE LEU ASP SER GLN ASN LEU SER ALA SEQRES 16 A 737 TYR ASN THR ARG LEU PHE LYS GLU VAL ASP GLY GLU GLY SEQRES 17 A 737 LYS PRO TYR TYR GLU VAL ARG LEU ALA SER VAL LEU GLY SEQRES 18 A 737 SER GLU PRO SER LEU ASP SER GLU VAL THR SER LYS LEU SEQRES 19 A 737 LYS SER TYR GLU PHE ARG GLY SER PRO PHE GLN VAL THR SEQRES 20 A 737 ARG GLY ASP TYR ALA PRO ILE LEU GLN LYS VAL VAL GLU SEQRES 21 A 737 GLN LEU GLU LYS ALA LYS ALA TYR ALA ALA ASN SER HIS SEQRES 22 A 737 GLN GLY GLN MET LEU ALA GLN TYR ILE GLU SER PHE THR SEQRES 23 A 737 GLN GLY SER ILE GLU ALA HIS LYS ARG GLY SER ARG PHE SEQRES 24 A 737 TRP ILE GLN ASP LYS GLY PRO ILE VAL GLU SER TYR ILE SEQRES 25 A 737 GLY PHE ILE GLU SER TYR ARG ASP PRO PHE GLY SER ARG SEQRES 26 A 737 GLY GLU PHE GLU GLY PHE VAL ALA VAL VAL ASN LYS ALA SEQRES 27 A 737 MET SER ALA LYS PHE GLU ARG LEU VAL ALA SER ALA GLU SEQRES 28 A 737 GLN LEU LEU LYS GLU LEU PRO TRP PRO PRO THR PHE GLU SEQRES 29 A 737 LYS ASP LYS PHE LEU THR PRO ASP PHE THR SER LEU ASP SEQRES 30 A 737 VAL LEU THR PHE ALA GLY SER GLY ILE PRO ALA GLY ILE SEQRES 31 A 737 ASN ILE PRO ASN TYR ASP ASP LEU ARG GLN THR GLU GLY SEQRES 32 A 737 PHE LYS ASN VAL SER LEU GLY ASN VAL LEU ALA VAL ALA SEQRES 33 A 737 TYR ALA THR GLN ARG GLU LYS LEU THR PHE LEU GLU GLU SEQRES 34 A 737 ASP ASP LYS ASP LEU TYR ILE LEU TRP LYS GLY PRO SER SEQRES 35 A 737 PHE ASP VAL GLN VAL GLY LEU HIS ALA LEU LEU GLY HIS SEQRES 36 A 737 GLY SER GLY LYS LEU PHE VAL GLN ASP GLU LYS GLY ALA SEQRES 37 A 737 PHE ASN PHE ASP GLN GLU THR VAL ILE ASN PRO GLU THR SEQRES 38 A 737 GLY GLU GLN ILE GLN SER TRP TYR ARG SER GLY GLU THR SEQRES 39 A 737 TRP ASP SER LYS PHE SER THR ILE ALA SER SER TYR GLU SEQRES 40 A 737 GLU CYS ARG ALA GLU SER VAL GLY LEU TYR LEU CYS LEU SEQRES 41 A 737 HIS PRO GLN VAL LEU GLU ILE PHE GLY PHE GLU GLY ALA SEQRES 42 A 737 ASP ALA GLU ASP VAL ILE TYR VAL ASN TRP LEU ASN MET SEQRES 43 A 737 VAL ARG ALA GLY LEU LEU ALA LEU GLU PHE TYR THR PRO SEQRES 44 A 737 GLU ALA PHE ASN TRP ARG GLN ALA HIS MET GLN ALA ARG SEQRES 45 A 737 PHE VAL ILE LEU ARG VAL LEU LEU GLU ALA GLY GLU GLY SEQRES 46 A 737 LEU VAL THR ILE THR PRO THR THR GLY SER ASP GLY ARG SEQRES 47 A 737 PRO ASP ALA ARG VAL ARG LEU ASP ARG SER LYS ILE ARG SEQRES 48 A 737 SER VAL GLY LYS PRO ALA LEU GLU ARG PHE LEU ARG ARG SEQRES 49 A 737 LEU GLN VAL LEU LYS SER THR GLY ASP VAL ALA GLY GLY SEQRES 50 A 737 ARG ALA LEU TYR GLU GLY TYR ALA THR VAL THR ASP ALA SEQRES 51 A 737 PRO PRO GLU CYS PHE LEU THR LEU ARG ASP THR VAL LEU SEQRES 52 A 737 LEU ARG LYS GLU SER ARG LYS LEU ILE VAL GLN PRO ASN SEQRES 53 A 737 THR ARG LEU GLU GLY SER ASP VAL GLN LEU LEU GLU TYR SEQRES 54 A 737 GLU ALA SER ALA ALA GLY LEU ILE ARG SER PHE SER GLU SEQRES 55 A 737 ARG PHE PRO GLU ASP GLY PRO GLU LEU GLU GLU ILE LEU SEQRES 56 A 737 THR GLN LEU ALA THR ALA ASP ALA ARG PHE TRP LYS GLY SEQRES 57 A 737 PRO SER GLU ALA PRO SER GLY GLN ALA SEQRES 1 F 4 VAL 1QI PRO TRP HET 1QI F 2 18 HET ZN A 801 1 HET K A 802 1 HET MG A 803 1 HETNAM 1QI (2R,4S,5S)-5-AZANYL-6-METHYL-4-OXIDANYL-2- HETNAM 2 1QI (PHENYLMETHYL)HEPTANOIC ACID HETNAM ZN ZINC ION HETNAM K POTASSIUM ION HETNAM MG MAGNESIUM ION FORMUL 2 1QI C15 H23 N O3 FORMUL 3 ZN ZN 2+ FORMUL 4 K K 1+ FORMUL 5 MG MG 2+ FORMUL 6 HOH *73(H2 O) HELIX 1 AA1 ASP A 3 ILE A 7 5 5 HELIX 2 AA2 CYS A 19 LEU A 26 1 8 HELIX 3 AA3 SER A 27 LEU A 46 1 20 HELIX 4 AA4 LEU A 46 GLN A 51 1 6 HELIX 5 AA5 GLU A 55 GLN A 70 1 16 HELIX 6 AA6 ASP A 71 GLU A 82 1 12 HELIX 7 AA7 THR A 85 MET A 103 1 19 HELIX 8 AA8 PRO A 119 GLY A 129 1 11 HELIX 9 AA9 SER A 130 HIS A 136 1 7 HELIX 10 AB1 HIS A 136 SER A 153 1 18 HELIX 11 AB2 GLU A 155 ARG A 159 5 5 HELIX 12 AB3 THR A 177 ASN A 192 1 16 HELIX 13 AB4 SER A 228 LYS A 233 1 6 HELIX 14 AB5 TYR A 251 ALA A 267 1 17 HELIX 15 AB6 ASN A 271 GLY A 288 1 18 HELIX 16 AB7 SER A 289 ASP A 303 1 15 HELIX 17 AB8 ASN A 336 SER A 349 1 14 HELIX 18 AB9 SER A 349 LYS A 355 1 7 HELIX 19 AC1 PRO A 360 GLU A 364 5 5 HELIX 20 AC2 TYR A 395 GLU A 402 1 8 HELIX 21 AC3 GLY A 410 ALA A 418 1 9 HELIX 22 AC4 GLU A 428 LEU A 453 1 26 HELIX 23 AC5 THR A 494 SER A 500 1 7 HELIX 24 AC6 ILE A 502 CYS A 519 1 18 HELIX 25 AC7 HIS A 521 PHE A 528 1 8 HELIX 26 AC8 GLU A 531 ALA A 553 1 23 HELIX 27 AC9 GLN A 566 ALA A 582 1 17 HELIX 28 AD1 SER A 608 VAL A 613 1 6 HELIX 29 AD2 VAL A 613 THR A 631 1 19 HELIX 30 AD3 ASP A 633 ALA A 645 1 13 HELIX 31 AD4 CYS A 654 ARG A 665 1 12 HELIX 32 AD5 SER A 692 GLU A 702 1 11 HELIX 33 AD6 ASP A 707 ASP A 722 1 16 HELIX 34 AD7 ALA A 723 TRP A 726 5 4 SHEET 1 AA1 2 VAL A 14 SER A 16 0 SHEET 2 AA1 2 LEU A 671 VAL A 673 1 O VAL A 673 N SER A 15 SHEET 1 AA2 4 THR A 198 VAL A 204 0 SHEET 2 AA2 4 PRO A 210 ALA A 217 -1 O GLU A 213 N PHE A 201 SHEET 3 AA2 4 SER A 242 ASP A 250 1 O PRO A 243 N TYR A 212 SHEET 4 AA2 4 SER A 236 PHE A 239 -1 N TYR A 237 O PHE A 244 SHEET 1 AA3 5 VAL A 308 GLU A 316 0 SHEET 2 AA3 5 GLU A 327 VAL A 335 -1 O ALA A 333 N GLU A 309 SHEET 3 AA3 5 ASP A 372 ALA A 382 -1 O LEU A 379 N VAL A 332 SHEET 4 AA3 5 LYS A 405 LEU A 409 1 O ASN A 406 N ASP A 372 SHEET 5 AA3 5 GLY A 389 ILE A 392 -1 N ILE A 392 O LYS A 405 SHEET 1 AA4 2 TYR A 557 THR A 558 0 SHEET 2 AA4 2 ASN A 563 TRP A 564 -1 O ASN A 563 N THR A 558 SHEET 1 AA5 2 VAL A 587 THR A 593 0 SHEET 2 AA5 2 PRO A 599 LEU A 605 -1 O ARG A 602 N THR A 590 SHEET 1 AA6 2 ASN A 676 GLU A 680 0 SHEET 2 AA6 2 ASP A 683 LEU A 687 -1 O LEU A 687 N ASN A 676 LINK C AVAL F 1 N A1QI F 2 1555 1555 1.50 LINK C A1QI F 2 N APRO F 3 1555 1555 1.48 LINK O GLY A 162 MG MG A 803 1555 1555 2.71 LINK O GLY A 164 MG MG A 803 1555 1555 2.35 LINK O GLY A 167 MG MG A 803 1555 1555 2.50 LINK O SER A 317 K K A 802 1555 1555 2.82 LINK OG SER A 317 K K A 802 1555 1555 2.79 LINK O GLY A 323 K K A 802 1555 1555 2.60 LINK NE2 HIS A 450 ZN ZN A 801 1555 1555 2.02 LINK NE2 HIS A 455 ZN ZN A 801 1555 1555 2.03 LINK OD1 ASP A 496 K K A 802 1555 1555 2.81 LINK OG SER A 504 K K A 802 1555 1555 2.81 LINK OE2 GLU A 508 ZN ZN A 801 1555 1555 2.00 LINK ZN ZN A 801 O BHOH A 941 1555 1555 2.12 LINK ZN ZN A 801 O1 A1QI F 2 1555 1555 1.84 LINK K K A 802 O HOH A 965 1555 1555 2.84 LINK MG MG A 803 O HOH A 957 1555 1555 2.10 CISPEP 1 ILE A 392 PRO A 393 0 5.16 CISPEP 2 PRO A 651 PRO A 652 0 0.90 CRYST1 119.337 105.597 64.861 90.00 93.65 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008380 0.000000 0.000535 0.00000 SCALE2 0.000000 0.009470 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015449 0.00000