HEADER TRANSFERASE 18-JUN-21 7OWF TITLE KLENTAQ DNA POLYMERASE IN A TERNARY COMPLEX WITH PRIMER/TEMPLATE AND TITLE 2 THE FLUORESCENT NUCLEOTIDE ANALOG BFDUTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE I, THERMOSTABLE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TAQ POLYMERASE 1; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PRIMER; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: TEMPLATE; COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS AQUATICUS; SOURCE 3 ORGANISM_TAXID: 271; SOURCE 4 GENE: POLA, POL1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS DNA POLYMERASE, KLENTAQ, KTQ, ARTIFICIAL SUBSTRATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.BETZ,S.G.SRIVATSAN REVDAT 2 19-JUN-24 7OWF 1 REMARK REVDAT 1 29-JUN-22 7OWF 0 JRNL AUTH P.GHOSH,H.M.KROPP,K.BETZ,S.LUDMANN,K.DIEDERICHS,A.MARX, JRNL AUTH 2 S.G.SRIVATSAN JRNL TITL MICROENVIRONMENT-SENSITIVE FLUORESCENT NUCLEOTIDE PROBES JRNL TITL 2 FROM BENZOFURAN, BENZOTHIOPHENE, AND SELENOPHENE AS JRNL TITL 3 SUBSTRATES FOR DNA POLYMERASES. JRNL REF J.AM.CHEM.SOC. V. 144 10556 2022 JRNL REFN ESSN 1520-5126 JRNL PMID 35666775 JRNL DOI 10.1021/JACS.2C03454 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4085 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 96258 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 4878 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.7100 - 5.9300 1.00 3039 176 0.1346 0.1479 REMARK 3 2 5.9200 - 4.7000 1.00 3059 158 0.1391 0.2104 REMARK 3 3 4.7000 - 4.1100 1.00 3072 160 0.1348 0.1849 REMARK 3 4 4.1100 - 3.7300 1.00 3010 191 0.1515 0.2010 REMARK 3 5 3.7300 - 3.4700 1.00 3035 184 0.1770 0.2039 REMARK 3 6 3.4700 - 3.2600 1.00 3033 171 0.1940 0.2538 REMARK 3 7 3.2600 - 3.1000 1.00 3066 160 0.2315 0.3095 REMARK 3 8 3.1000 - 2.9600 1.00 3051 156 0.2316 0.2874 REMARK 3 9 2.9600 - 2.8500 1.00 3062 173 0.2382 0.3130 REMARK 3 10 2.8500 - 2.7500 1.00 3047 157 0.2427 0.2618 REMARK 3 11 2.7500 - 2.6700 1.00 3083 168 0.2540 0.3215 REMARK 3 12 2.6700 - 2.5900 1.00 3025 176 0.2578 0.3637 REMARK 3 13 2.5900 - 2.5200 1.00 3045 184 0.2479 0.2933 REMARK 3 14 2.5200 - 2.4600 1.00 2990 154 0.2467 0.3075 REMARK 3 15 2.4600 - 2.4000 1.00 3096 145 0.2410 0.2835 REMARK 3 16 2.4000 - 2.3500 1.00 3096 139 0.2460 0.2851 REMARK 3 17 2.3500 - 2.3100 1.00 3106 150 0.2562 0.3329 REMARK 3 18 2.3100 - 2.2600 1.00 3056 165 0.2593 0.3322 REMARK 3 19 2.2600 - 2.2200 1.00 3067 128 0.2586 0.3035 REMARK 3 20 2.2200 - 2.1800 1.00 3027 168 0.2619 0.3391 REMARK 3 21 2.1800 - 2.1500 1.00 3091 140 0.2736 0.3209 REMARK 3 22 2.1500 - 2.1200 1.00 3052 145 0.2827 0.3385 REMARK 3 23 2.1200 - 2.0800 1.00 3108 150 0.3125 0.2960 REMARK 3 24 2.0800 - 2.0600 1.00 3072 159 0.3105 0.3329 REMARK 3 25 2.0500 - 2.0300 1.00 2999 175 0.3116 0.3504 REMARK 3 26 2.0300 - 2.0000 1.00 3044 193 0.3303 0.3099 REMARK 3 27 2.0000 - 1.9800 1.00 3034 155 0.3513 0.4260 REMARK 3 28 1.9800 - 1.9500 1.00 3076 172 0.3672 0.3455 REMARK 3 29 1.9500 - 1.9300 1.00 3032 157 0.3778 0.3520 REMARK 3 30 1.9300 - 1.9100 0.95 2807 169 0.4091 0.4408 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.355 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 5071 REMARK 3 ANGLE : 1.310 6984 REMARK 3 CHIRALITY : 0.060 764 REMARK 3 PLANARITY : 0.013 829 REMARK 3 DIHEDRAL : 16.446 1986 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 294 THROUGH 420 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.4512 -42.9505 -17.5011 REMARK 3 T TENSOR REMARK 3 T11: 0.5097 T22: 0.4435 REMARK 3 T33: 0.8702 T12: -0.1052 REMARK 3 T13: 0.1563 T23: -0.0397 REMARK 3 L TENSOR REMARK 3 L11: 5.1897 L22: 2.1771 REMARK 3 L33: 3.0221 L12: 0.0128 REMARK 3 L13: -0.3489 L23: -0.0071 REMARK 3 S TENSOR REMARK 3 S11: -0.1868 S12: -0.0275 S13: -1.2359 REMARK 3 S21: -0.2227 S22: 0.0654 S23: -0.5846 REMARK 3 S31: 0.5325 S32: 0.1270 S33: 0.0930 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 421 THROUGH 603 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.6931 -15.0494 -2.5027 REMARK 3 T TENSOR REMARK 3 T11: 0.3684 T22: 0.2944 REMARK 3 T33: 0.3221 T12: 0.0477 REMARK 3 T13: 0.0267 T23: 0.0574 REMARK 3 L TENSOR REMARK 3 L11: 2.2918 L22: 2.1736 REMARK 3 L33: 3.7560 L12: 0.9521 REMARK 3 L13: -0.7913 L23: -0.0205 REMARK 3 S TENSOR REMARK 3 S11: 0.0845 S12: -0.0327 S13: 0.1470 REMARK 3 S21: 0.1131 S22: -0.0137 S23: 0.0301 REMARK 3 S31: -0.7435 S32: -0.2289 S33: -0.0482 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 604 THROUGH 700 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1422 -14.0981 -6.6856 REMARK 3 T TENSOR REMARK 3 T11: 0.8273 T22: 1.4180 REMARK 3 T33: 0.5848 T12: 0.4046 REMARK 3 T13: 0.0267 T23: 0.1764 REMARK 3 L TENSOR REMARK 3 L11: 0.8737 L22: 2.4848 REMARK 3 L33: 3.1324 L12: 0.6462 REMARK 3 L13: -0.2217 L23: -0.9919 REMARK 3 S TENSOR REMARK 3 S11: -0.1423 S12: -0.0927 S13: 0.5874 REMARK 3 S21: 0.4293 S22: 0.3926 S23: 0.5617 REMARK 3 S31: -1.3069 S32: -1.6379 S33: -0.1664 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 701 THROUGH 832 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2952 -26.0993 -15.4012 REMARK 3 T TENSOR REMARK 3 T11: 0.3782 T22: 0.7279 REMARK 3 T33: 0.3215 T12: -0.0317 REMARK 3 T13: 0.0052 T23: 0.0527 REMARK 3 L TENSOR REMARK 3 L11: 2.7403 L22: 1.7691 REMARK 3 L33: 3.5263 L12: 0.8138 REMARK 3 L13: -0.2331 L23: -0.2937 REMARK 3 S TENSOR REMARK 3 S11: -0.2721 S12: 0.2783 S13: -0.1060 REMARK 3 S21: -0.3239 S22: 0.3672 S23: 0.1021 REMARK 3 S31: -0.1142 S32: -1.1287 S33: -0.1059 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.2684 -23.7830 5.2635 REMARK 3 T TENSOR REMARK 3 T11: 0.3615 T22: 0.4914 REMARK 3 T33: 0.3999 T12: 0.0404 REMARK 3 T13: 0.0351 T23: 0.0539 REMARK 3 L TENSOR REMARK 3 L11: 6.3567 L22: 2.6778 REMARK 3 L33: 4.6535 L12: 2.6628 REMARK 3 L13: 0.3223 L23: -1.2127 REMARK 3 S TENSOR REMARK 3 S11: 0.1142 S12: 0.6249 S13: -0.9867 REMARK 3 S21: -0.0960 S22: -0.4913 S23: -0.4802 REMARK 3 S31: -0.1663 S32: 0.7009 S33: 0.2896 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 201 THROUGH 205 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8198 -21.5011 6.9948 REMARK 3 T TENSOR REMARK 3 T11: 0.8639 T22: 1.0954 REMARK 3 T33: 0.5394 T12: 0.0262 REMARK 3 T13: -0.0323 T23: 0.1334 REMARK 3 L TENSOR REMARK 3 L11: 5.1162 L22: 3.1152 REMARK 3 L33: 6.5812 L12: -0.9282 REMARK 3 L13: 1.5078 L23: 3.5556 REMARK 3 S TENSOR REMARK 3 S11: -0.3431 S12: -0.6252 S13: 0.3491 REMARK 3 S21: 1.5915 S22: -0.4797 S23: -0.1594 REMARK 3 S31: -0.1304 S32: -0.6494 S33: 0.6101 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 206 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.6124 -24.1541 5.9010 REMARK 3 T TENSOR REMARK 3 T11: 0.3347 T22: 0.3756 REMARK 3 T33: 0.3190 T12: 0.0420 REMARK 3 T13: -0.0221 T23: 0.0718 REMARK 3 L TENSOR REMARK 3 L11: 4.0915 L22: 4.6344 REMARK 3 L33: 2.8345 L12: 1.7258 REMARK 3 L13: -2.5552 L23: 0.7646 REMARK 3 S TENSOR REMARK 3 S11: -0.1312 S12: -0.1586 S13: -0.2559 REMARK 3 S21: 0.4001 S22: 0.2618 S23: -0.5291 REMARK 3 S31: 0.1325 S32: 0.5290 S33: -0.1602 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OWF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1292116484. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000089622351307 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 96475 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 47.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 6000, 0.1M TRIS PH 8.0, 0.2M REMARK 280 MAGNESIUM FORMATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.43200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.86400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 60.86400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.43200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1001 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1079 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1038 O HOH A 1064 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA C 204 O3' DA C 204 C3' -0.067 REMARK 500 DT C 206 O3' DT C 206 C3' -0.049 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA B 102 O5' - P - OP2 ANGL. DEV. = -9.7 DEGREES REMARK 500 DC B 104 O5' - P - OP2 ANGL. DEV. = -5.5 DEGREES REMARK 500 DG B 108 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC B 109 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 DC B 110 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DOC B 112 O3' - P - O5' ANGL. DEV. = 17.2 DEGREES REMARK 500 DOC B 112 O3' - P - OP1 ANGL. DEV. = -25.5 DEGREES REMARK 500 DC C 203 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG C 205 OP1 - P - OP2 ANGL. DEV. = 9.4 DEGREES REMARK 500 DT C 206 O5' - P - OP2 ANGL. DEV. = -5.4 DEGREES REMARK 500 DT C 206 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG C 208 O5' - P - OP2 ANGL. DEV. = -7.1 DEGREES REMARK 500 DC C 210 O5' - P - OP1 ANGL. DEV. = -6.8 DEGREES REMARK 500 DG C 214 O4' - C1' - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 DC C 216 O3' - P - OP2 ANGL. DEV. = 7.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 294 -36.89 -162.24 REMARK 500 ASP A 381 112.18 -160.31 REMARK 500 THR A 399 -152.89 -109.54 REMARK 500 VAL A 433 -69.28 -128.13 REMARK 500 ASP A 496 -62.90 -102.37 REMARK 500 HIS A 526 138.75 -172.39 REMARK 500 TYR A 545 -54.04 -121.89 REMARK 500 VAL A 586 -18.31 -155.90 REMARK 500 GLU A 601 154.94 -48.55 REMARK 500 GLN A 633 7.26 -68.08 REMARK 500 HIS A 784 -63.99 71.66 REMARK 500 TYR A 811 88.13 -167.19 REMARK 500 LYS A 831 32.80 -89.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 610 OD1 REMARK 620 2 TYR A 611 O 85.2 REMARK 620 3 ASP A 785 OD2 86.8 90.3 REMARK 620 4 2IU A 903 O3 95.4 175.4 85.2 REMARK 620 5 2IU A 903 O6 176.9 92.2 94.9 87.4 REMARK 620 6 2IU A 903 O9 87.8 97.3 170.3 87.3 90.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 610 OD2 REMARK 620 2 ASP A 785 OD1 115.5 REMARK 620 3 2IU A 903 O3 110.4 83.1 REMARK 620 4 HOH A1014 O 101.0 87.6 148.2 REMARK 620 5 HOH A1041 O 88.6 155.7 85.2 91.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA B 102 OP2 REMARK 620 2 DA B 102 O5' 54.7 REMARK 620 N 1 DBREF 7OWF A 293 832 UNP P19821 DPO1_THEAQ 293 832 DBREF 7OWF B 101 112 PDB 7OWF 7OWF 101 112 DBREF 7OWF C 201 216 PDB 7OWF 7OWF 201 216 SEQRES 1 A 540 ALA LEU GLU GLU ALA PRO TRP PRO PRO PRO GLU GLY ALA SEQRES 2 A 540 PHE VAL GLY PHE VAL LEU SER ARG LYS GLU PRO MET TRP SEQRES 3 A 540 ALA ASP LEU LEU ALA LEU ALA ALA ALA ARG GLY GLY ARG SEQRES 4 A 540 VAL HIS ARG ALA PRO GLU PRO TYR LYS ALA LEU ARG ASP SEQRES 5 A 540 LEU LYS GLU ALA ARG GLY LEU LEU ALA LYS ASP LEU SER SEQRES 6 A 540 VAL LEU ALA LEU ARG GLU GLY LEU GLY LEU PRO PRO GLY SEQRES 7 A 540 ASP ASP PRO MET LEU LEU ALA TYR LEU LEU ASP PRO SER SEQRES 8 A 540 ASN THR THR PRO GLU GLY VAL ALA ARG ARG TYR GLY GLY SEQRES 9 A 540 GLU TRP THR GLU GLU ALA GLY GLU ARG ALA ALA LEU SER SEQRES 10 A 540 GLU ARG LEU PHE ALA ASN LEU TRP GLY ARG LEU GLU GLY SEQRES 11 A 540 GLU GLU ARG LEU LEU TRP LEU TYR ARG GLU VAL GLU ARG SEQRES 12 A 540 PRO LEU SER ALA VAL LEU ALA HIS MET GLU ALA THR GLY SEQRES 13 A 540 VAL ARG LEU ASP VAL ALA TYR LEU ARG ALA LEU SER LEU SEQRES 14 A 540 GLU VAL ALA GLU GLU ILE ALA ARG LEU GLU ALA GLU VAL SEQRES 15 A 540 PHE ARG LEU ALA GLY HIS PRO PHE ASN LEU ASN SER ARG SEQRES 16 A 540 ASP GLN LEU GLU ARG VAL LEU PHE ASP GLU LEU GLY LEU SEQRES 17 A 540 PRO ALA ILE GLY LYS THR GLU LYS THR GLY LYS ARG SER SEQRES 18 A 540 THR SER ALA ALA VAL LEU GLU ALA LEU ARG GLU ALA HIS SEQRES 19 A 540 PRO ILE VAL GLU LYS ILE LEU GLN TYR ARG GLU LEU THR SEQRES 20 A 540 LYS LEU LYS SER THR TYR ILE ASP PRO LEU PRO ASP LEU SEQRES 21 A 540 ILE HIS PRO ARG THR GLY ARG LEU HIS THR ARG PHE ASN SEQRES 22 A 540 GLN THR ALA THR ALA THR GLY ARG LEU SER SER SER ASP SEQRES 23 A 540 PRO ASN LEU GLN ASN ILE PRO VAL ARG THR PRO LEU GLY SEQRES 24 A 540 GLN ARG ILE ARG ARG ALA PHE ILE ALA GLU GLU GLY TRP SEQRES 25 A 540 LEU LEU VAL ALA LEU ASP TYR SER GLN ILE GLU LEU ARG SEQRES 26 A 540 VAL LEU ALA HIS LEU SER GLY ASP GLU ASN LEU ILE ARG SEQRES 27 A 540 VAL PHE GLN GLU GLY ARG ASP ILE HIS THR GLU THR ALA SEQRES 28 A 540 SER TRP MET PHE GLY VAL PRO ARG GLU ALA VAL ASP PRO SEQRES 29 A 540 LEU MET ARG ARG ALA ALA LYS THR ILE ASN PHE GLY VAL SEQRES 30 A 540 LEU TYR GLY MET SER ALA HIS ARG LEU SER GLN GLU LEU SEQRES 31 A 540 ALA ILE PRO TYR GLU GLU ALA GLN ALA PHE ILE GLU ARG SEQRES 32 A 540 TYR PHE GLN SER PHE PRO LYS VAL ARG ALA TRP ILE GLU SEQRES 33 A 540 LYS THR LEU GLU GLU GLY ARG ARG ARG GLY TYR VAL GLU SEQRES 34 A 540 THR LEU PHE GLY ARG ARG ARG TYR VAL PRO ASP LEU GLU SEQRES 35 A 540 ALA ARG VAL LYS SER VAL ARG GLU ALA ALA GLU ARG MET SEQRES 36 A 540 ALA PHE ASN MET PRO VAL GLN GLY THR ALA ALA ASP LEU SEQRES 37 A 540 MET LYS LEU ALA MET VAL LYS LEU PHE PRO ARG LEU GLU SEQRES 38 A 540 GLU MET GLY ALA ARG MET LEU LEU GLN VAL HIS ASP GLU SEQRES 39 A 540 LEU VAL LEU GLU ALA PRO LYS GLU ARG ALA GLU ALA VAL SEQRES 40 A 540 ALA ARG LEU ALA LYS GLU VAL MET GLU GLY VAL TYR PRO SEQRES 41 A 540 LEU ALA VAL PRO LEU GLU VAL GLU VAL GLY ILE GLY GLU SEQRES 42 A 540 ASP TRP LEU SER ALA LYS GLU SEQRES 1 B 12 DG DA DC DC DA DC DG DG DC DC DA DOC SEQRES 1 C 16 DA DA DC DA DG DT DG DG DC DC DG DT DG SEQRES 2 C 16 DG DT DC HET DOC B 112 30 HET MG A 901 1 HET MG A 902 1 HET 2IU A 903 37 HET GOL B 201 14 HET MG B 202 1 HET GOL C 301 14 HET GOL C 302 14 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM 2IU [[(2R,3S,5R)-5-[5-(1-BENZOFURAN-2-YL)-2,4- HETNAM 2 2IU BIS(OXIDANYLIDENE)PYRIMIDIN-1-YL]-3-OXIDANYL-OXOLAN-2- HETNAM 3 2IU YL]METHOXY-OXIDANYL-PHOSPHORYL] PHOSPHONO HYDROGEN HETNAM 4 2IU PHOSPHATE HETNAM GOL GLYCEROL HETSYN 2IU BFDUTP HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 DOC C9 H14 N3 O6 P FORMUL 4 MG 3(MG 2+) FORMUL 6 2IU C17 H19 N2 O15 P3 FORMUL 7 GOL 3(C3 H8 O3) FORMUL 11 HOH *102(H2 O) HELIX 1 AA1 GLU A 315 ALA A 319 5 5 HELIX 2 AA2 GLU A 337 ARG A 343 1 7 HELIX 3 AA3 LEU A 352 GLU A 363 1 12 HELIX 4 AA4 ASP A 372 ASP A 381 1 10 HELIX 5 AA5 THR A 386 GLY A 395 1 10 HELIX 6 AA6 GLU A 401 LEU A 420 1 20 HELIX 7 AA7 GLU A 423 VAL A 433 1 11 HELIX 8 AA8 VAL A 433 GLY A 448 1 16 HELIX 9 AA9 ASP A 452 GLY A 479 1 28 HELIX 10 AB1 SER A 486 ASP A 496 1 11 HELIX 11 AB2 SER A 515 ALA A 521 1 7 HELIX 12 AB3 HIS A 526 TYR A 545 1 20 HELIX 13 AB4 PRO A 548 ILE A 553 5 6 HELIX 14 AB5 THR A 588 ARG A 596 1 9 HELIX 15 AB6 GLN A 613 GLY A 624 1 12 HELIX 16 AB7 ASP A 625 GLU A 634 1 10 HELIX 17 AB8 ASP A 637 GLY A 648 1 12 HELIX 18 AB9 PRO A 650 VAL A 654 5 5 HELIX 19 AC1 ASP A 655 TYR A 671 1 17 HELIX 20 AC2 SER A 674 LEU A 682 1 9 HELIX 21 AC3 PRO A 685 PHE A 700 1 16 HELIX 22 AC4 PRO A 701 GLY A 718 1 18 HELIX 23 AC5 PRO A 731 ALA A 735 5 5 HELIX 24 AC6 VAL A 737 MET A 775 1 39 HELIX 25 AC7 ARG A 795 VAL A 810 1 16 HELIX 26 AC8 ASP A 826 LYS A 831 1 6 SHEET 1 AA1 3 PHE A 306 LEU A 311 0 SHEET 2 AA1 3 LEU A 321 ARG A 328 -1 O ALA A 325 N GLY A 308 SHEET 3 AA1 3 ARG A 331 ARG A 334 -1 O HIS A 333 N ALA A 326 SHEET 1 AA2 2 ARG A 450 LEU A 451 0 SHEET 2 AA2 2 PHE A 598 ILE A 599 -1 O ILE A 599 N ARG A 450 SHEET 1 AA3 2 ARG A 563 ASN A 565 0 SHEET 2 AA3 2 SER A 575 SER A 577 -1 O SER A 577 N ARG A 563 SHEET 1 AA4 4 ARG A 778 GLN A 782 0 SHEET 2 AA4 4 GLU A 786 PRO A 792 -1 O VAL A 788 N LEU A 780 SHEET 3 AA4 4 TRP A 604 TYR A 611 -1 N VAL A 607 O LEU A 789 SHEET 4 AA4 4 VAL A 819 GLY A 824 -1 O GLY A 824 N LEU A 606 SHEET 1 AA5 2 TYR A 719 GLU A 721 0 SHEET 2 AA5 2 ARG A 727 TYR A 729 -1 O ARG A 728 N VAL A 720 LINK O3' DA B 111 P DOC B 112 1555 1555 1.59 LINK OD1 ASP A 610 MG MG A 901 1555 1555 2.12 LINK OD2 ASP A 610 MG MG A 902 1555 1555 2.25 LINK O TYR A 611 MG MG A 901 1555 1555 2.19 LINK OD2 ASP A 785 MG MG A 901 1555 1555 2.03 LINK OD1 ASP A 785 MG MG A 902 1555 1555 2.11 LINK MG MG A 901 O3 2IU A 903 1555 1555 2.17 LINK MG MG A 901 O6 2IU A 903 1555 1555 2.16 LINK MG MG A 901 O9 2IU A 903 1555 1555 2.11 LINK MG MG A 902 O3 2IU A 903 1555 1555 2.31 LINK MG MG A 902 O HOH A1014 1555 1555 2.38 LINK MG MG A 902 O HOH A1041 1555 1555 2.23 LINK OP2 DA B 102 MG MG B 202 1555 1555 1.98 LINK O5' DA B 102 MG MG B 202 1555 1555 2.77 CISPEP 1 TRP A 299 PRO A 300 0 3.76 CISPEP 2 ASP A 578 PRO A 579 0 2.03 CRYST1 110.175 110.175 91.296 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009076 0.005240 0.000000 0.00000 SCALE2 0.000000 0.010481 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010953 0.00000