HEADER TRANSFERASE 18-JUN-21 7OWO TITLE HSNMT1 IN COMPLEX WITH BOTH MYRCOA AND N-ACETYLATED KSFSKPR PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE 1,TYPE I N- COMPND 5 MYRISTOYLTRANSFERASE,PEPTIDE N-MYRISTOYLTRANSFERASE 1; COMPND 6 EC: 2.3.1.97; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: N-ACETYL-LYS-SER-PHE-SER-LYS-PRO-ARG; COMPND 10 CHAIN: D, F; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NMT1, NMT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2 PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS E-MYRISTOYLATION, NMT, MYRISTOYLTRANSFERASE TYPE1, ACYLTRANSFERASE, KEYWDS 2 GNAT, GCN5-RELATED N-ACETYLTRANSFERASES, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.DIAN,C.GIGLIONE,T.MEINNEL REVDAT 2 31-JAN-24 7OWO 1 REMARK REVDAT 1 21-DEC-22 7OWO 0 JRNL AUTH F.RIVIERE,C.DIAN,R.F.DUTHEIL,P.MONASSA,C.GIGLIONE,T.MEINNEL JRNL TITL STRUCTURAL AND LARGE-SCALE ANALYSIS UNVEIL THE INTERTWINED JRNL TITL 2 PATHS PROMOTING NMT-CATALYZED LYSINE AND GLYCINE JRNL TITL 3 MYRISTOYLATION. JRNL REF J.MOL.BIOL. V. 434 67843 2022 JRNL REFN ESSN 1089-8638 JRNL PMID 36181773 JRNL DOI 10.1016/J.JMB.2022.167843 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17_3644 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.8 REMARK 3 NUMBER OF REFLECTIONS : 79519 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 3942 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7200 - 5.1600 1.00 3373 170 0.1874 0.2264 REMARK 3 2 5.1600 - 4.1000 1.00 3208 161 0.1379 0.1801 REMARK 3 3 4.1000 - 3.5800 1.00 3183 160 0.1460 0.1760 REMARK 3 4 3.5800 - 3.2500 1.00 3160 157 0.1647 0.1857 REMARK 3 5 3.2500 - 3.0200 1.00 3136 178 0.1796 0.2239 REMARK 3 6 3.0200 - 2.8400 1.00 3121 164 0.1815 0.2218 REMARK 3 7 2.8400 - 2.7000 1.00 3142 161 0.1937 0.2428 REMARK 3 8 2.7000 - 2.5800 1.00 3111 148 0.1866 0.2236 REMARK 3 9 2.5800 - 2.4800 1.00 3109 162 0.1913 0.2292 REMARK 3 10 2.4800 - 2.4000 1.00 3108 153 0.1896 0.2294 REMARK 3 11 2.4000 - 2.3200 1.00 3103 158 0.1850 0.2364 REMARK 3 12 2.3200 - 2.2500 1.00 3109 151 0.1955 0.2431 REMARK 3 13 2.2500 - 2.2000 1.00 3081 176 0.1920 0.2453 REMARK 3 14 2.2000 - 2.1400 1.00 3079 152 0.1931 0.2013 REMARK 3 15 2.1400 - 2.0900 1.00 3088 165 0.2033 0.2615 REMARK 3 16 2.0900 - 2.0500 0.99 3043 174 0.2008 0.2350 REMARK 3 17 2.0500 - 2.0100 0.95 2913 153 0.2055 0.2473 REMARK 3 18 2.0100 - 1.9700 0.89 2772 151 0.2142 0.2580 REMARK 3 19 1.9700 - 1.9300 0.84 2552 138 0.2300 0.2887 REMARK 3 20 1.9300 - 1.9000 0.78 2443 118 0.2279 0.2816 REMARK 3 21 1.9000 - 1.8700 0.74 2276 125 0.2246 0.2655 REMARK 3 22 1.8700 - 1.8400 0.70 2176 103 0.2220 0.2705 REMARK 3 23 1.8400 - 1.8200 0.67 2008 124 0.2300 0.2700 REMARK 3 24 1.8200 - 1.7900 0.63 1939 100 0.2248 0.2597 REMARK 3 25 1.7900 - 1.7700 0.57 1757 82 0.2199 0.2973 REMARK 3 26 1.7700 - 1.7400 0.54 1653 81 0.2281 0.2783 REMARK 3 27 1.7400 - 1.7200 0.50 1518 101 0.2406 0.2788 REMARK 3 28 1.7200 - 1.7000 0.46 1416 76 0.2514 0.3510 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.054 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6885 REMARK 3 ANGLE : 0.899 9375 REMARK 3 CHIRALITY : 0.062 1023 REMARK 3 PLANARITY : 0.006 1173 REMARK 3 DIHEDRAL : 20.994 2651 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OWO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1292116268. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : K/B MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : STARANISO, AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79532 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 48.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 12.31 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.40100 REMARK 200 FOR SHELL : 1.872 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5O9T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG 6K, 100MM NACITRATE 5.6, 100MM REMARK 280 MGCL2, 100MM NACL, PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 39.65750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 89.14350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.65750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 89.14350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 95 REMARK 465 GLY A 96 REMARK 465 SER A 97 REMARK 465 GLU A 98 REMARK 465 PHE A 99 REMARK 465 SER A 100 REMARK 465 VAL A 101 REMARK 465 GLY A 102 REMARK 465 GLN A 103 REMARK 465 GLY A 104 REMARK 465 GLY B 95 REMARK 465 GLY B 96 REMARK 465 SER B 97 REMARK 465 GLU B 98 REMARK 465 PHE B 99 REMARK 465 SER B 100 REMARK 465 VAL B 101 REMARK 465 GLY B 102 REMARK 465 GLN B 103 REMARK 465 GLY B 104 REMARK 465 PRO B 411 REMARK 465 THR B 412 REMARK 465 HIS B 413 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 110 CG CD OE1 OE2 REMARK 470 GLU A 111 CG CD OE1 OE2 REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 GLN A 118 CG CD OE1 NE2 REMARK 470 LYS A 127 CG CD CE NZ REMARK 470 ASN A 133 CG OD1 ND2 REMARK 470 ARG A 166 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 195 CG CD OE1 OE2 REMARK 470 LYS A 253 NZ REMARK 470 ARG A 304 CZ NH1 NH2 REMARK 470 LYS A 310 NZ REMARK 470 SER A 315 OG REMARK 470 ARG A 316 CB CG CD NE CZ NH1 NH2 REMARK 470 GLN A 321 CG CD OE1 NE2 REMARK 470 ARG A 322 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 ARG A 328 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 114 CG CD CE NZ REMARK 470 ARG B 115 CD NE CZ NH1 NH2 REMARK 470 ARG B 166 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 316 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 321 CG CD OE1 NE2 REMARK 470 ARG B 322 CZ NH1 NH2 REMARK 470 LYS B 325 CG CD CE NZ REMARK 470 LYS B 334 CG CD CE NZ REMARK 470 ARG B 355 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 410 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 414 CG CD CE NZ REMARK 470 ARG D 9 CG CD NE CZ NH1 NH2 REMARK 470 LYS F 7 CG CD CE NZ REMARK 470 ARG F 9 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 141 O HOH A 601 2.14 REMARK 500 O ASN B 473 OG SER F 4 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ACE D 301 O - C - N ANGL. DEV. = -20.7 DEGREES REMARK 500 ACE D 301 O - C - N ANGL. DEV. = -11.4 DEGREES REMARK 500 LYS D 3 C - N - CA ANGL. DEV. = 30.0 DEGREES REMARK 500 LYS D 3 C - N - CA ANGL. DEV. = 19.2 DEGREES REMARK 500 LYS F 3 C - N - CA ANGL. DEV. = 26.0 DEGREES REMARK 500 LYS F 3 C - N - CA ANGL. DEV. = 33.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 117 78.99 -111.73 REMARK 500 TYR A 236 -113.83 50.29 REMARK 500 ASN A 302 78.53 -118.44 REMARK 500 ASN A 317 43.87 -95.92 REMARK 500 ILE A 381 -61.26 -134.94 REMARK 500 PHE A 422 -102.29 -113.01 REMARK 500 MET A 456 -136.36 44.12 REMARK 500 ARG B 202 54.58 -118.66 REMARK 500 TYR B 236 -114.73 49.22 REMARK 500 ARG B 316 -133.04 57.13 REMARK 500 ILE B 381 -63.14 -130.97 REMARK 500 ASN B 409 -95.34 -85.59 REMARK 500 PHE B 422 -101.20 -112.45 REMARK 500 MET B 456 -131.30 49.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 952 DISTANCE = 5.82 ANGSTROMS DBREF 7OWO A 99 496 UNP P30419 NMT1_HUMAN 99 496 DBREF 7OWO B 99 496 UNP P30419 NMT1_HUMAN 99 496 DBREF 7OWO D 301 9 PDB 7OWO 7OWO 301 9 DBREF 7OWO F 601 9 PDB 7OWO 7OWO 601 9 SEQADV 7OWO GLY A 95 UNP P30419 EXPRESSION TAG SEQADV 7OWO GLY A 96 UNP P30419 EXPRESSION TAG SEQADV 7OWO SER A 97 UNP P30419 EXPRESSION TAG SEQADV 7OWO GLU A 98 UNP P30419 EXPRESSION TAG SEQADV 7OWO GLY B 95 UNP P30419 EXPRESSION TAG SEQADV 7OWO GLY B 96 UNP P30419 EXPRESSION TAG SEQADV 7OWO SER B 97 UNP P30419 EXPRESSION TAG SEQADV 7OWO GLU B 98 UNP P30419 EXPRESSION TAG SEQRES 1 A 402 GLY GLY SER GLU PHE SER VAL GLY GLN GLY PRO ALA LYS SEQRES 2 A 402 THR MET GLU GLU ALA SER LYS ARG SER TYR GLN PHE TRP SEQRES 3 A 402 ASP THR GLN PRO VAL PRO LYS LEU GLY GLU VAL VAL ASN SEQRES 4 A 402 THR HIS GLY PRO VAL GLU PRO ASP LYS ASP ASN ILE ARG SEQRES 5 A 402 GLN GLU PRO TYR THR LEU PRO GLN GLY PHE THR TRP ASP SEQRES 6 A 402 ALA LEU ASP LEU GLY ASP ARG GLY VAL LEU LYS GLU LEU SEQRES 7 A 402 TYR THR LEU LEU ASN GLU ASN TYR VAL GLU ASP ASP ASP SEQRES 8 A 402 ASN MET PHE ARG PHE ASP TYR SER PRO GLU PHE LEU LEU SEQRES 9 A 402 TRP ALA LEU ARG PRO PRO GLY TRP LEU PRO GLN TRP HIS SEQRES 10 A 402 CYS GLY VAL ARG VAL VAL SER SER ARG LYS LEU VAL GLY SEQRES 11 A 402 PHE ILE SER ALA ILE PRO ALA ASN ILE HIS ILE TYR ASP SEQRES 12 A 402 THR GLU LYS LYS MET VAL GLU ILE ASN PHE LEU CYS VAL SEQRES 13 A 402 HIS LYS LYS LEU ARG SER LYS ARG VAL ALA PRO VAL LEU SEQRES 14 A 402 ILE ARG GLU ILE THR ARG ARG VAL HIS LEU GLU GLY ILE SEQRES 15 A 402 PHE GLN ALA VAL TYR THR ALA GLY VAL VAL LEU PRO LYS SEQRES 16 A 402 PRO VAL GLY THR CYS ARG TYR TRP HIS ARG SER LEU ASN SEQRES 17 A 402 PRO ARG LYS LEU ILE GLU VAL LYS PHE SER HIS LEU SER SEQRES 18 A 402 ARG ASN MET THR MET GLN ARG THR MET LYS LEU TYR ARG SEQRES 19 A 402 LEU PRO GLU THR PRO LYS THR ALA GLY LEU ARG PRO MET SEQRES 20 A 402 GLU THR LYS ASP ILE PRO VAL VAL HIS GLN LEU LEU THR SEQRES 21 A 402 ARG TYR LEU LYS GLN PHE HIS LEU THR PRO VAL MET SER SEQRES 22 A 402 GLN GLU GLU VAL GLU HIS TRP PHE TYR PRO GLN GLU ASN SEQRES 23 A 402 ILE ILE ASP THR PHE VAL VAL GLU ASN ALA ASN GLY GLU SEQRES 24 A 402 VAL THR ASP PHE LEU SER PHE TYR THR LEU PRO SER THR SEQRES 25 A 402 ILE MET ASN HIS PRO THR HIS LYS SER LEU LYS ALA ALA SEQRES 26 A 402 TYR SER PHE TYR ASN VAL HIS THR GLN THR PRO LEU LEU SEQRES 27 A 402 ASP LEU MET SER ASP ALA LEU VAL LEU ALA LYS MET LYS SEQRES 28 A 402 GLY PHE ASP VAL PHE ASN ALA LEU ASP LEU MET GLU ASN SEQRES 29 A 402 LYS THR PHE LEU GLU LYS LEU LYS PHE GLY ILE GLY ASP SEQRES 30 A 402 GLY ASN LEU GLN TYR TYR LEU TYR ASN TRP LYS CYS PRO SEQRES 31 A 402 SER MET GLY ALA GLU LYS VAL GLY LEU VAL LEU GLN SEQRES 1 B 402 GLY GLY SER GLU PHE SER VAL GLY GLN GLY PRO ALA LYS SEQRES 2 B 402 THR MET GLU GLU ALA SER LYS ARG SER TYR GLN PHE TRP SEQRES 3 B 402 ASP THR GLN PRO VAL PRO LYS LEU GLY GLU VAL VAL ASN SEQRES 4 B 402 THR HIS GLY PRO VAL GLU PRO ASP LYS ASP ASN ILE ARG SEQRES 5 B 402 GLN GLU PRO TYR THR LEU PRO GLN GLY PHE THR TRP ASP SEQRES 6 B 402 ALA LEU ASP LEU GLY ASP ARG GLY VAL LEU LYS GLU LEU SEQRES 7 B 402 TYR THR LEU LEU ASN GLU ASN TYR VAL GLU ASP ASP ASP SEQRES 8 B 402 ASN MET PHE ARG PHE ASP TYR SER PRO GLU PHE LEU LEU SEQRES 9 B 402 TRP ALA LEU ARG PRO PRO GLY TRP LEU PRO GLN TRP HIS SEQRES 10 B 402 CYS GLY VAL ARG VAL VAL SER SER ARG LYS LEU VAL GLY SEQRES 11 B 402 PHE ILE SER ALA ILE PRO ALA ASN ILE HIS ILE TYR ASP SEQRES 12 B 402 THR GLU LYS LYS MET VAL GLU ILE ASN PHE LEU CYS VAL SEQRES 13 B 402 HIS LYS LYS LEU ARG SER LYS ARG VAL ALA PRO VAL LEU SEQRES 14 B 402 ILE ARG GLU ILE THR ARG ARG VAL HIS LEU GLU GLY ILE SEQRES 15 B 402 PHE GLN ALA VAL TYR THR ALA GLY VAL VAL LEU PRO LYS SEQRES 16 B 402 PRO VAL GLY THR CYS ARG TYR TRP HIS ARG SER LEU ASN SEQRES 17 B 402 PRO ARG LYS LEU ILE GLU VAL LYS PHE SER HIS LEU SER SEQRES 18 B 402 ARG ASN MET THR MET GLN ARG THR MET LYS LEU TYR ARG SEQRES 19 B 402 LEU PRO GLU THR PRO LYS THR ALA GLY LEU ARG PRO MET SEQRES 20 B 402 GLU THR LYS ASP ILE PRO VAL VAL HIS GLN LEU LEU THR SEQRES 21 B 402 ARG TYR LEU LYS GLN PHE HIS LEU THR PRO VAL MET SER SEQRES 22 B 402 GLN GLU GLU VAL GLU HIS TRP PHE TYR PRO GLN GLU ASN SEQRES 23 B 402 ILE ILE ASP THR PHE VAL VAL GLU ASN ALA ASN GLY GLU SEQRES 24 B 402 VAL THR ASP PHE LEU SER PHE TYR THR LEU PRO SER THR SEQRES 25 B 402 ILE MET ASN HIS PRO THR HIS LYS SER LEU LYS ALA ALA SEQRES 26 B 402 TYR SER PHE TYR ASN VAL HIS THR GLN THR PRO LEU LEU SEQRES 27 B 402 ASP LEU MET SER ASP ALA LEU VAL LEU ALA LYS MET LYS SEQRES 28 B 402 GLY PHE ASP VAL PHE ASN ALA LEU ASP LEU MET GLU ASN SEQRES 29 B 402 LYS THR PHE LEU GLU LYS LEU LYS PHE GLY ILE GLY ASP SEQRES 30 B 402 GLY ASN LEU GLN TYR TYR LEU TYR ASN TRP LYS CYS PRO SEQRES 31 B 402 SER MET GLY ALA GLU LYS VAL GLY LEU VAL LEU GLN SEQRES 1 D 8 ACE LYS SER PHE SER LYS PRO ARG SEQRES 1 F 8 ACE LYS SER PHE SER LYS PRO ARG HET ACE D 301 3 HET ACE F 601 3 HET GOL A 501 6 HET COA A 502 48 HET MYA A 503 63 HET MYA B 501 63 HET GOL B 502 6 HET MYR D 401 15 HETNAM ACE ACETYL GROUP HETNAM GOL GLYCEROL HETNAM COA COENZYME A HETNAM MYA TETRADECANOYL-COA HETNAM MYR MYRISTIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN MYA MYRISTOYL-COA FORMUL 3 ACE 2(C2 H4 O) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 6 COA C21 H36 N7 O16 P3 S FORMUL 7 MYA 2(C35 H62 N7 O17 P3 S) FORMUL 10 MYR C14 H28 O2 FORMUL 11 HOH *676(H2 O) HELIX 1 AA1 PHE A 119 GLN A 123 5 5 HELIX 2 AA2 ASP A 165 TYR A 180 1 16 HELIX 3 AA3 SER A 193 ARG A 202 1 10 HELIX 4 AA4 LEU A 207 GLN A 209 5 3 HELIX 5 AA5 LYS A 252 ARG A 255 5 4 HELIX 6 AA6 ARG A 258 LEU A 273 1 16 HELIX 7 AA7 ASN A 302 VAL A 309 1 8 HELIX 8 AA8 THR A 319 TYR A 327 1 9 HELIX 9 AA9 GLU A 342 LYS A 344 5 3 HELIX 10 AB1 ASP A 345 LYS A 358 1 14 HELIX 11 AB2 SER A 367 TYR A 376 1 10 HELIX 12 AB3 PRO A 430 LYS A 445 1 16 HELIX 13 AB4 ASN A 458 GLU A 463 1 6 HELIX 14 AB5 GLY A 487 VAL A 491 5 5 HELIX 15 AB6 THR B 108 ARG B 115 1 8 HELIX 16 AB7 PHE B 119 GLN B 123 5 5 HELIX 17 AB8 ASP B 165 TYR B 180 1 16 HELIX 18 AB9 SER B 193 ARG B 202 1 10 HELIX 19 AC1 LEU B 207 GLN B 209 5 3 HELIX 20 AC2 ARG B 258 LEU B 273 1 16 HELIX 21 AC3 ASN B 302 VAL B 309 1 8 HELIX 22 AC4 THR B 319 TYR B 327 1 9 HELIX 23 AC5 GLU B 342 LYS B 344 5 3 HELIX 24 AC6 ASP B 345 LYS B 358 1 14 HELIX 25 AC7 SER B 367 TYR B 376 1 10 HELIX 26 AC8 PRO B 430 LYS B 445 1 16 HELIX 27 AC9 GLU B 457 PHE B 461 5 5 HELIX 28 AD1 GLY B 487 VAL B 491 5 5 SHEET 1 AA111 PHE A 156 ALA A 160 0 SHEET 2 AA111 HIS A 211 VAL A 216 -1 O ARG A 215 N THR A 157 SHEET 3 AA111 LEU A 222 ILE A 235 -1 O VAL A 223 N VAL A 214 SHEET 4 AA111 THR A 238 VAL A 250 -1 O MET A 242 N ALA A 231 SHEET 5 AA111 ALA A 279 ALA A 283 1 O VAL A 280 N VAL A 243 SHEET 6 AA111 GLY A 468 TYR A 479 -1 O TYR A 479 N ALA A 279 SHEET 7 AA111 GLY A 292 SER A 300 -1 N HIS A 298 O GLY A 468 SHEET 8 AA111 VAL A 449 LEU A 453 -1 O ALA A 452 N TRP A 297 SHEET 9 AA111 ALA A 418 SER A 421 1 N ALA A 419 O ASN A 451 SHEET 10 AA111 VAL A 394 THR A 402 -1 N TYR A 401 O TYR A 420 SHEET 11 AA111 LEU A 362 PRO A 364 0 SHEET 1 AA211 LEU A 338 PRO A 340 0 SHEET 2 AA211 ILE A 382 GLU A 388 -1 O VAL A 386 N ARG A 339 SHEET 3 AA211 VAL A 394 THR A 402 -1 O ASP A 396 N VAL A 387 SHEET 4 AA211 ALA A 418 SER A 421 -1 O TYR A 420 N TYR A 401 SHEET 5 AA211 VAL A 449 LEU A 453 1 O ASN A 451 N ALA A 419 SHEET 6 AA211 GLY A 292 SER A 300 -1 N TRP A 297 O ALA A 452 SHEET 7 AA211 GLY A 468 TYR A 479 -1 O GLY A 468 N HIS A 298 SHEET 8 AA211 ALA A 279 ALA A 283 -1 N ALA A 279 O TYR A 479 SHEET 9 AA211 THR A 238 VAL A 250 1 N VAL A 243 O VAL A 280 SHEET 10 AA211 LEU A 222 ILE A 235 -1 N ALA A 231 O MET A 242 SHEET 11 AA211 VAL A 425 HIS A 426 0 SHEET 1 AA3 3 PHE A 188 PHE A 190 0 SHEET 2 AA3 3 SER A 405 ILE A 407 -1 O THR A 406 N ARG A 189 SHEET 3 AA3 3 SER A 415 LEU A 416 -1 O LEU A 416 N SER A 405 SHEET 1 AA411 PHE B 156 ALA B 160 0 SHEET 2 AA411 HIS B 211 VAL B 216 -1 O ARG B 215 N THR B 157 SHEET 3 AA411 LEU B 222 ILE B 235 -1 O VAL B 223 N VAL B 214 SHEET 4 AA411 THR B 238 VAL B 250 -1 O THR B 238 N ILE B 235 SHEET 5 AA411 ALA B 279 ALA B 283 1 O VAL B 280 N VAL B 243 SHEET 6 AA411 GLY B 468 TYR B 479 -1 O TYR B 479 N ALA B 279 SHEET 7 AA411 GLY B 292 SER B 300 -1 N HIS B 298 O GLY B 468 SHEET 8 AA411 VAL B 449 LEU B 453 -1 O ALA B 452 N TRP B 297 SHEET 9 AA411 ALA B 418 SER B 421 1 N ALA B 419 O ASN B 451 SHEET 10 AA411 VAL B 394 THR B 402 -1 N TYR B 401 O TYR B 420 SHEET 11 AA411 LEU B 362 VAL B 365 0 SHEET 1 AA511 LEU B 338 PRO B 340 0 SHEET 2 AA511 ILE B 382 GLU B 388 -1 O VAL B 386 N ARG B 339 SHEET 3 AA511 VAL B 394 THR B 402 -1 O LEU B 398 N PHE B 385 SHEET 4 AA511 ALA B 418 SER B 421 -1 O TYR B 420 N TYR B 401 SHEET 5 AA511 VAL B 449 LEU B 453 1 O ASN B 451 N ALA B 419 SHEET 6 AA511 GLY B 292 SER B 300 -1 N TRP B 297 O ALA B 452 SHEET 7 AA511 GLY B 468 TYR B 479 -1 O GLY B 468 N HIS B 298 SHEET 8 AA511 ALA B 279 ALA B 283 -1 N ALA B 279 O TYR B 479 SHEET 9 AA511 THR B 238 VAL B 250 1 N VAL B 243 O VAL B 280 SHEET 10 AA511 LEU B 222 ILE B 235 -1 N ILE B 235 O THR B 238 SHEET 11 AA511 VAL B 425 HIS B 426 0 SHEET 1 AA6 3 PHE B 188 PHE B 190 0 SHEET 2 AA6 3 SER B 405 ILE B 407 -1 O THR B 406 N ARG B 189 SHEET 3 AA6 3 SER B 415 LEU B 416 -1 O LEU B 416 N SER B 405 LINK N ALYS D 3 C ACE D 301 1555 1555 1.36 LINK N BLYS D 3 C ACE D 301 1555 1555 1.34 LINK NZ ALYS D 3 C1 AMYR D 401 1555 1555 1.32 LINK N ALYS F 3 C ACE F 601 1555 1555 1.40 LINK N BLYS F 3 C ACE F 601 1555 1555 1.41 CISPEP 1 PRO A 288 LYS A 289 0 -8.23 CISPEP 2 PRO B 288 LYS B 289 0 -14.16 CRYST1 79.315 178.287 58.173 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012608 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005609 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017190 0.00000