HEADER ISOMERASE 22-JUN-21 7OXH TITLE TTSLYD WITH PSEUDO-WILD-TYPE S2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.2.1.8; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 30S RIBOSOMAL PROTEIN S2; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: SMALL RIBOSOMAL SUBUNIT PROTEIN US2; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: FRAGMENT OF 30S RIBOSOMAL PROTEIN S2 PEPTIDE; COMPND 13 CHAIN: E; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS (STRAIN ATCC 27634 / DSM SOURCE 3 579 / HB8); SOURCE 4 ORGANISM_TAXID: 300852; SOURCE 5 STRAIN: ATCC 27634 / DSM 579 / HB8; SOURCE 6 GENE: TTHA0346; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 12 ORGANISM_TAXID: 83333; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS FKBP, CHAPERONE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.PAZICKY,J.LEI,C.LOEW REVDAT 2 31-JAN-24 7OXH 1 REMARK REVDAT 1 16-MAR-22 7OXH 0 JRNL AUTH S.PAZICKY,A.A.WERLE,J.LEI,C.LOW,U.WEININGER JRNL TITL IMPACT OF DISTANT PEPTIDE SUBSTRATE RESIDUES ON ENZYMATIC JRNL TITL 2 ACTIVITY OF SLYD. JRNL REF CELL.MOL.LIFE SCI. V. 79 138 2022 JRNL REFN ESSN 1420-9071 JRNL PMID 35184231 JRNL DOI 10.1007/S00018-022-04179-4 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20979 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 1020 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.6300 - 3.2500 0.99 3016 152 0.1811 0.2187 REMARK 3 2 3.2500 - 2.5800 1.00 2881 149 0.2243 0.2490 REMARK 3 3 2.5800 - 2.2600 1.00 2853 142 0.2280 0.2733 REMARK 3 4 2.2600 - 2.0500 1.00 2829 133 0.2089 0.2321 REMARK 3 5 2.0500 - 1.9000 1.00 2810 147 0.2163 0.2555 REMARK 3 6 1.9000 - 1.7900 1.00 2800 167 0.2256 0.2787 REMARK 3 7 1.7900 - 1.7000 0.99 2770 130 0.2679 0.2878 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.185 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.453 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1364 REMARK 3 ANGLE : 0.967 1836 REMARK 3 CHIRALITY : 0.061 193 REMARK 3 PLANARITY : 0.007 246 REMARK 3 DIHEDRAL : 11.200 197 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 1:44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.115 -16.849 10.905 REMARK 3 T TENSOR REMARK 3 T11: 0.1501 T22: 0.5762 REMARK 3 T33: 0.2444 T12: 0.0130 REMARK 3 T13: 0.0597 T23: -0.0316 REMARK 3 L TENSOR REMARK 3 L11: 5.9581 L22: 2.7358 REMARK 3 L33: 1.6726 L12: 1.1355 REMARK 3 L13: -0.2902 L23: 0.5329 REMARK 3 S TENSOR REMARK 3 S11: 0.0249 S12: -1.1445 S13: 0.2378 REMARK 3 S21: 0.1004 S22: -0.2032 S23: 0.4930 REMARK 3 S31: -0.2500 S32: -0.7175 S33: -0.0200 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 45:78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.405 -18.365 9.443 REMARK 3 T TENSOR REMARK 3 T11: 0.2113 T22: 0.3805 REMARK 3 T33: 0.2805 T12: 0.0088 REMARK 3 T13: 0.0062 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 4.4525 L22: 0.5386 REMARK 3 L33: 0.0523 L12: -1.1240 REMARK 3 L13: -1.2920 L23: 0.1027 REMARK 3 S TENSOR REMARK 3 S11: -0.2046 S12: -0.1861 S13: -0.6468 REMARK 3 S21: 0.0455 S22: 0.0254 S23: 0.1299 REMARK 3 S31: -0.0071 S32: 0.0908 S33: 0.1108 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 79:89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.898 2.293 4.587 REMARK 3 T TENSOR REMARK 3 T11: 0.9018 T22: 0.5127 REMARK 3 T33: 0.7882 T12: -0.2014 REMARK 3 T13: -0.1403 T23: 0.2510 REMARK 3 L TENSOR REMARK 3 L11: 7.5217 L22: 3.0935 REMARK 3 L33: 0.1804 L12: 0.2753 REMARK 3 L13: 0.7062 L23: 0.5940 REMARK 3 S TENSOR REMARK 3 S11: -0.4587 S12: 0.9388 S13: 3.3489 REMARK 3 S21: -1.0903 S22: -0.4010 S23: 1.4871 REMARK 3 S31: -1.5500 S32: 0.0047 S33: 0.1725 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 90:99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.260 -1.812 19.013 REMARK 3 T TENSOR REMARK 3 T11: 0.4495 T22: 0.3568 REMARK 3 T33: 0.2667 T12: -0.0702 REMARK 3 T13: -0.0166 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 4.4765 L22: 1.9791 REMARK 3 L33: 6.3260 L12: 0.0822 REMARK 3 L13: 0.1430 L23: -0.5583 REMARK 3 S TENSOR REMARK 3 S11: -0.6642 S12: 0.2743 S13: -0.1369 REMARK 3 S21: -0.1074 S22: 0.1310 S23: -0.0699 REMARK 3 S31: -0.4831 S32: 0.4482 S33: -0.1504 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 100:125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.364 -9.472 7.972 REMARK 3 T TENSOR REMARK 3 T11: 0.2848 T22: 0.4455 REMARK 3 T33: 0.2362 T12: -0.0369 REMARK 3 T13: -0.0175 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 2.9354 L22: 3.3248 REMARK 3 L33: 2.7823 L12: 0.8240 REMARK 3 L13: -1.2607 L23: -0.4767 REMARK 3 S TENSOR REMARK 3 S11: -0.1421 S12: 0.3094 S13: -0.3154 REMARK 3 S21: -0.2219 S22: 0.1952 S23: 0.0554 REMARK 3 S31: -0.4670 S32: 0.0490 S33: -0.0598 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 126:145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.080 -14.274 16.358 REMARK 3 T TENSOR REMARK 3 T11: 0.2661 T22: 0.6997 REMARK 3 T33: 0.2366 T12: 0.0080 REMARK 3 T13: 0.0737 T23: -0.0880 REMARK 3 L TENSOR REMARK 3 L11: 4.0137 L22: 0.7308 REMARK 3 L33: 0.5741 L12: 0.6736 REMARK 3 L13: 0.1805 L23: -0.5416 REMARK 3 S TENSOR REMARK 3 S11: 0.0203 S12: -1.2318 S13: 0.2674 REMARK 3 S21: 0.3284 S22: -0.2645 S23: 0.3136 REMARK 3 S31: -0.0877 S32: -0.3372 S33: 0.0717 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 146:155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.847 -6.902 16.076 REMARK 3 T TENSOR REMARK 3 T11: 0.8071 T22: 1.1485 REMARK 3 T33: 0.7190 T12: 0.0180 REMARK 3 T13: -0.0794 T23: -0.2412 REMARK 3 L TENSOR REMARK 3 L11: 6.1523 L22: 3.2888 REMARK 3 L33: 0.3881 L12: -0.4060 REMARK 3 L13: 0.3753 L23: -0.4359 REMARK 3 S TENSOR REMARK 3 S11: -0.6248 S12: -1.5461 S13: 0.2488 REMARK 3 S21: -0.4616 S22: -0.8393 S23: -0.2302 REMARK 3 S31: -0.6415 S32: 0.2822 S33: -0.1179 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN B AND RESID 5:15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.267 -11.725 13.489 REMARK 3 T TENSOR REMARK 3 T11: 0.4433 T22: 1.0904 REMARK 3 T33: 0.9656 T12: 0.0066 REMARK 3 T13: 0.2334 T23: -0.2584 REMARK 3 L TENSOR REMARK 3 L11: 8.5713 L22: 6.4988 REMARK 3 L33: 2.5224 L12: -6.7229 REMARK 3 L13: 1.4873 L23: 0.5956 REMARK 3 S TENSOR REMARK 3 S11: -0.0064 S12: -1.6920 S13: 1.1581 REMARK 3 S21: 0.4287 S22: -0.3231 S23: 1.7159 REMARK 3 S31: -0.5348 S32: -0.0357 S33: -0.1226 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN E AND RESID 1:2 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.529 -13.184 16.741 REMARK 3 T TENSOR REMARK 3 T11: 0.5707 T22: 1.7492 REMARK 3 T33: 0.1564 T12: 0.2432 REMARK 3 T13: -0.0633 T23: 0.3168 REMARK 3 L TENSOR REMARK 3 L11: 1.9991 L22: 2.0025 REMARK 3 L33: 2.0008 L12: 2.0032 REMARK 3 L13: 2.0012 L23: 2.0014 REMARK 3 S TENSOR REMARK 3 S11: 1.4955 S12: 2.5691 S13: -1.6069 REMARK 3 S21: -0.5567 S22: -2.0221 S23: 1.2399 REMARK 3 S31: -0.7457 S32: -1.9081 S33: 0.8625 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OXH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1292114203. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976300 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20988 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 42.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : 0.03603 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 14.10 REMARK 200 R MERGE FOR SHELL (I) : 0.69690 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3CGM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CACODYLATE, PEG 200, PH 6.5, REMARK 280 COUNTER-DIFFUSION, TEMPERATURE 292.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.73800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.47600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 87.47600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.73800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O6 PE4 A 201 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 327 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 353 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 363 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 156 REMARK 465 HIS A 157 REMARK 465 HIS A 158 REMARK 465 THR B 1 REMARK 465 ARG B 2 REMARK 465 TYR B 3 REMARK 465 TRP B 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 62 -107.12 -113.40 REMARK 500 GLU A 81 -133.19 63.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 81 ASP A 82 138.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PE4 A 201 REMARK 610 PE4 A 202 REMARK 610 PE4 A 204 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 205 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 97 OE2 REMARK 620 2 HOH A 310 O 92.3 REMARK 620 3 HOH A 311 O 174.8 92.8 REMARK 620 4 HOH A 312 O 88.4 90.0 91.8 REMARK 620 5 HOH A 314 O 85.7 172.5 89.2 97.2 REMARK 620 6 HOH A 346 O 90.7 84.6 89.6 174.5 88.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 206 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 304 O REMARK 620 2 HOH A 307 O 100.2 REMARK 620 3 HOH A 307 O 91.6 166.7 REMARK 620 4 HOH A 324 O 168.3 91.5 76.7 REMARK 620 5 HOH A 324 O 140.9 88.1 86.5 39.9 REMARK 620 6 HOH A 343 O 128.4 87.3 80.6 50.3 89.8 REMARK 620 7 HOH A 343 O 82.9 98.7 88.6 96.7 58.0 146.8 REMARK 620 N 1 2 3 4 5 6 DBREF 7OXH A 1 149 UNP Q5SLE7 Q5SLE7_THET8 1 149 DBREF 7OXH B 1 15 UNP P0A7V0 RS2_ECOLI 20 34 DBREF 7OXH E 1 2 PDB 7OXH 7OXH 1 2 SEQADV 7OXH PRO A 150 UNP Q5SLE7 EXPRESSION TAG SEQADV 7OXH SER A 151 UNP Q5SLE7 EXPRESSION TAG SEQADV 7OXH GLY A 152 UNP Q5SLE7 EXPRESSION TAG SEQADV 7OXH HIS A 153 UNP Q5SLE7 EXPRESSION TAG SEQADV 7OXH HIS A 154 UNP Q5SLE7 EXPRESSION TAG SEQADV 7OXH HIS A 155 UNP Q5SLE7 EXPRESSION TAG SEQADV 7OXH HIS A 156 UNP Q5SLE7 EXPRESSION TAG SEQADV 7OXH HIS A 157 UNP Q5SLE7 EXPRESSION TAG SEQADV 7OXH HIS A 158 UNP Q5SLE7 EXPRESSION TAG SEQADV 7OXH ALA B 6 UNP P0A7V0 PRO 25 ENGINEERED MUTATION SEQADV 7OXH LEU B 9 UNP P0A7V0 LYS 28 ENGINEERED MUTATION SEQADV 7OXH ALA B 12 UNP P0A7V0 ILE 31 ENGINEERED MUTATION SEQRES 1 A 158 MET LYS VAL GLY GLN ASP LYS VAL VAL THR ILE ARG TYR SEQRES 2 A 158 THR LEU GLN VAL GLU GLY GLU VAL LEU ASP GLN GLY GLU SEQRES 3 A 158 LEU SER TYR LEU HIS GLY HIS ARG ASN LEU ILE PRO GLY SEQRES 4 A 158 LEU GLU GLU ALA LEU GLU GLY ARG GLU GLU GLY GLU ALA SEQRES 5 A 158 PHE GLN ALA HIS VAL PRO ALA GLU LYS ALA TYR GLY PRO SEQRES 6 A 158 HIS ASP PRO GLU GLY VAL GLN VAL VAL PRO LEU SER ALA SEQRES 7 A 158 PHE PRO GLU ASP ALA GLU VAL VAL PRO GLY ALA GLN PHE SEQRES 8 A 158 TYR ALA GLN ASP MET GLU GLY ASN PRO MET PRO LEU THR SEQRES 9 A 158 VAL VAL ALA VAL GLU GLY GLU GLU VAL THR VAL ASP PHE SEQRES 10 A 158 ASN HIS PRO LEU ALA GLY LYS ASP LEU ASP PHE GLN VAL SEQRES 11 A 158 GLU VAL VAL LYS VAL ARG GLU ALA THR PRO GLU GLU LEU SEQRES 12 A 158 LEU HIS GLY HIS ALA HIS PRO SER GLY HIS HIS HIS HIS SEQRES 13 A 158 HIS HIS SEQRES 1 B 15 THR ARG TYR TRP ASN ALA LYS MET LEU PRO PHE ALA PHE SEQRES 2 B 15 GLY ALA SEQRES 1 E 2 UNK UNK HET PE4 A 201 13 HET PE4 A 202 10 HET PEG A 203 7 HET PE4 A 204 13 HET NI A 205 1 HET NI A 206 1 HET CL A 207 1 HETNAM PE4 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETNAM 2 PE4 ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM NI NICKEL (II) ION HETNAM CL CHLORIDE ION HETSYN PE4 POLYETHYLENE GLYCOL PEG4000 FORMUL 4 PE4 3(C16 H34 O8) FORMUL 6 PEG C4 H10 O3 FORMUL 8 NI 2(NI 2+) FORMUL 10 CL CL 1- FORMUL 11 HOH *75(H2 O) HELIX 1 AA1 ILE A 37 GLU A 45 1 9 HELIX 2 AA2 PRO A 58 ALA A 62 5 5 HELIX 3 AA3 ASP A 67 GLU A 69 5 3 HELIX 4 AA4 SER A 77 PHE A 79 5 3 HELIX 5 AA5 THR A 139 GLY A 146 1 8 SHEET 1 AA1 5 ALA A 52 VAL A 57 0 SHEET 2 AA1 5 LEU A 126 GLU A 137 -1 O PHE A 128 N ALA A 55 SHEET 3 AA1 5 LYS A 7 VAL A 17 -1 N THR A 10 O LYS A 134 SHEET 4 AA1 5 GLU A 20 LEU A 30 -1 O ASP A 23 N LEU A 15 SHEET 5 AA1 5 GLY A 152 HIS A 155 -1 O GLY A 152 N SER A 28 SHEET 1 AA2 4 VAL A 71 PRO A 75 0 SHEET 2 AA2 4 GLU A 112 ASP A 116 -1 O VAL A 113 N VAL A 74 SHEET 3 AA2 4 PRO A 100 GLU A 109 -1 N VAL A 106 O THR A 114 SHEET 4 AA2 4 GLN A 90 GLN A 94 -1 N ALA A 93 O MET A 101 LINK OE2 GLU A 97 NI NI A 205 1555 1555 2.02 LINK NI NI A 205 O HOH A 310 1555 6555 2.16 LINK NI NI A 205 O HOH A 311 1555 6555 2.16 LINK NI NI A 205 O HOH A 312 1555 6665 2.10 LINK NI NI A 205 O HOH A 314 1555 6665 2.21 LINK NI NI A 205 O HOH A 346 1555 1555 2.21 LINK NI NI A 206 O HOH A 304 1555 4655 2.12 LINK NI NI A 206 O HOH A 307 1555 1555 2.22 LINK NI NI A 206 O HOH A 307 1555 4645 2.57 LINK NI NI A 206 O HOH A 324 1555 1555 2.32 LINK NI NI A 206 O HOH A 324 1555 4645 2.15 LINK NI NI A 206 O HOH A 343 1555 1555 2.59 LINK NI NI A 206 O HOH A 343 1555 4645 2.18 CISPEP 1 HIS A 149 PRO A 150 0 -9.87 CISPEP 2 LEU B 9 PRO B 10 0 4.03 CRYST1 49.225 49.225 131.214 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020315 0.011729 0.000000 0.00000 SCALE2 0.000000 0.023458 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007621 0.00000