HEADER ISOMERASE 22-JUN-21 7OXJ TITLE TTSLYD WITH M8A PSEUDO-WILD-TYPE S2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.2.1.8; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 30S RIBOSOMAL PROTEIN S2; COMPND 8 CHAIN: D; COMPND 9 SYNONYM: SMALL RIBOSOMAL SUBUNIT PROTEIN US2; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: FRAGMENT OF 30S RIBOSOMAL PROTEIN S2 PEPTIDE; COMPND 14 CHAIN: E; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS (STRAIN ATCC 27634 / DSM SOURCE 3 579 / HB8); SOURCE 4 ORGANISM_TAXID: 300852; SOURCE 5 STRAIN: ATCC 27634 / DSM 579 / HB8; SOURCE 6 GENE: TTHA0346; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 12 ORGANISM_TAXID: 83333; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS FKBP, CHAPERONE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.PAZICKY,J.LEI,C.LOEW REVDAT 2 31-JAN-24 7OXJ 1 REMARK REVDAT 1 16-MAR-22 7OXJ 0 JRNL AUTH S.PAZICKY,A.A.WERLE,J.LEI,C.LOW,U.WEININGER JRNL TITL IMPACT OF DISTANT PEPTIDE SUBSTRATE RESIDUES ON ENZYMATIC JRNL TITL 2 ACTIVITY OF SLYD. JRNL REF CELL.MOL.LIFE SCI. V. 79 138 2022 JRNL REFN ESSN 1420-9071 JRNL PMID 35184231 JRNL DOI 10.1007/S00018-022-04179-4 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 16336 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.6800 - 3.3700 1.00 2746 145 0.1801 0.1929 REMARK 3 2 3.3700 - 2.6700 1.00 2598 137 0.2151 0.2620 REMARK 3 3 2.6700 - 2.3300 1.00 2557 134 0.2263 0.2486 REMARK 3 4 2.3300 - 2.1200 1.00 2558 135 0.2081 0.2491 REMARK 3 5 2.1200 - 1.9700 1.00 2517 132 0.2128 0.2678 REMARK 3 6 1.9700 - 1.8500 1.00 2543 134 0.2429 0.2883 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.216 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.047 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1329 REMARK 3 ANGLE : 1.117 1794 REMARK 3 CHIRALITY : 0.073 191 REMARK 3 PLANARITY : 0.008 241 REMARK 3 DIHEDRAL : 15.225 187 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 6 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.9446 12.6935 -12.6613 REMARK 3 T TENSOR REMARK 3 T11: 1.3580 T22: 1.3843 REMARK 3 T33: 1.0927 T12: 0.5685 REMARK 3 T13: 0.5293 T23: 0.3280 REMARK 3 L TENSOR REMARK 3 L11: 2.9107 L22: 5.5310 REMARK 3 L33: 2.9330 L12: 1.4572 REMARK 3 L13: -1.2711 L23: 2.7509 REMARK 3 S TENSOR REMARK 3 S11: 1.8723 S12: 2.9963 S13: 1.3515 REMARK 3 S21: -2.7526 S22: -1.5806 S23: -0.9679 REMARK 3 S31: -2.7904 S32: -3.0332 S33: -1.0478 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 2 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2022 -0.9319 -16.6946 REMARK 3 T TENSOR REMARK 3 T11: 1.1610 T22: 1.1268 REMARK 3 T33: 0.6330 T12: 0.3119 REMARK 3 T13: -0.1523 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 2.0012 L22: 1.9977 REMARK 3 L33: 1.9994 L12: -9.0348 REMARK 3 L13: 1.9997 L23: 2.0009 REMARK 3 S TENSOR REMARK 3 S11: -1.5744 S12: -5.5521 S13: -1.0477 REMARK 3 S21: 0.1998 S22: 1.4925 S23: 0.4725 REMARK 3 S31: -0.1547 S32: 1.9569 S33: 0.4060 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.6077 17.9229 -10.0781 REMARK 3 T TENSOR REMARK 3 T11: 0.4596 T22: 0.3232 REMARK 3 T33: 0.4103 T12: 0.1662 REMARK 3 T13: 0.0463 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 3.4402 L22: 5.8162 REMARK 3 L33: 3.0881 L12: -1.5398 REMARK 3 L13: -0.4831 L23: -0.5774 REMARK 3 S TENSOR REMARK 3 S11: 0.2627 S12: 0.2160 S13: -0.3155 REMARK 3 S21: -0.8423 S22: -0.3646 S23: -0.2214 REMARK 3 S31: 0.5884 S32: 0.4086 S33: 0.0684 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0378 1.1206 -10.0447 REMARK 3 T TENSOR REMARK 3 T11: 0.4304 T22: 0.2393 REMARK 3 T33: 0.2998 T12: 0.0045 REMARK 3 T13: -0.0560 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 2.7878 L22: 4.6267 REMARK 3 L33: 3.7680 L12: -0.2018 REMARK 3 L13: -0.1128 L23: -0.4680 REMARK 3 S TENSOR REMARK 3 S11: -0.0383 S12: -0.1078 S13: 0.0063 REMARK 3 S21: 0.4442 S22: -0.0542 S23: -0.1735 REMARK 3 S31: -0.6243 S32: 0.4917 S33: 0.1221 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.2601 23.3637 -15.9939 REMARK 3 T TENSOR REMARK 3 T11: 0.7842 T22: 0.6014 REMARK 3 T33: 0.5226 T12: 0.3163 REMARK 3 T13: 0.2647 T23: 0.1085 REMARK 3 L TENSOR REMARK 3 L11: 0.6168 L22: 1.8763 REMARK 3 L33: 1.0643 L12: 0.7495 REMARK 3 L13: 0.1228 L23: -0.8326 REMARK 3 S TENSOR REMARK 3 S11: -0.0540 S12: 0.3817 S13: -0.1991 REMARK 3 S21: -1.3694 S22: -0.8272 S23: -0.9208 REMARK 3 S31: 0.6582 S32: 1.1689 S33: 0.5494 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OXJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1292114209. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16345 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 42.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.60 REMARK 200 R MERGE (I) : 0.04170 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 15.10 REMARK 200 R MERGE FOR SHELL (I) : 1.04000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4ODL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CACODYLATE, PEG 200, PH 6.5, REMARK 280 MICROBATCH, TEMPERATURE 292.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.56667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.13333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 87.13333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.56667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 205 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 337 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 353 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 371 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 157 REMARK 465 HIS A 158 REMARK 465 THR D 1 REMARK 465 ARG D 2 REMARK 465 TYR D 3 REMARK 465 TRP D 4 REMARK 465 ASN D 5 REMARK 465 PHE D 13 REMARK 465 GLY D 14 REMARK 465 ALA D 15 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 20 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 307 O HOH A 363 2.01 REMARK 500 O HOH A 312 O HOH A 365 2.11 REMARK 500 O HOH A 344 O HOH A 350 2.12 REMARK 500 O HOH A 344 O HOH A 356 2.12 REMARK 500 O HOH A 362 O HOH A 385 2.13 REMARK 500 O HOH A 359 O HOH A 386 2.14 REMARK 500 O HOH A 376 O HOH A 380 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 333 O HOH A 333 4555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 62 -110.24 -117.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 201 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 97 OE2 REMARK 620 2 HOH A 308 O 174.7 REMARK 620 3 HOH A 311 O 90.8 92.3 REMARK 620 4 HOH A 315 O 88.1 87.9 84.8 REMARK 620 5 HOH A 320 O 85.8 91.4 175.4 98.1 REMARK 620 6 HOH A 345 O 91.9 92.4 88.3 173.2 88.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 205 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 306 O REMARK 620 2 HOH A 306 O 72.5 REMARK 620 3 HOH A 316 O 88.3 91.4 REMARK 620 4 HOH A 316 O 91.4 88.3 179.6 REMARK 620 5 HOH A 333 O 109.9 174.7 93.4 87.0 REMARK 620 N 1 2 3 4 DBREF 7OXJ A 1 149 UNP Q5SLE7 Q5SLE7_THET8 1 149 DBREF 7OXJ D 1 15 UNP P0A7V0 RS2_ECOLI 20 34 DBREF 7OXJ E 1 2 PDB 7OXJ 7OXJ 1 2 SEQADV 7OXJ PRO A 150 UNP Q5SLE7 EXPRESSION TAG SEQADV 7OXJ SER A 151 UNP Q5SLE7 EXPRESSION TAG SEQADV 7OXJ GLY A 152 UNP Q5SLE7 EXPRESSION TAG SEQADV 7OXJ HIS A 153 UNP Q5SLE7 EXPRESSION TAG SEQADV 7OXJ HIS A 154 UNP Q5SLE7 EXPRESSION TAG SEQADV 7OXJ HIS A 155 UNP Q5SLE7 EXPRESSION TAG SEQADV 7OXJ HIS A 156 UNP Q5SLE7 EXPRESSION TAG SEQADV 7OXJ HIS A 157 UNP Q5SLE7 EXPRESSION TAG SEQADV 7OXJ HIS A 158 UNP Q5SLE7 EXPRESSION TAG SEQADV 7OXJ ALA D 6 UNP P0A7V0 PRO 25 ENGINEERED MUTATION SEQADV 7OXJ ALA D 8 UNP P0A7V0 MET 27 ENGINEERED MUTATION SEQADV 7OXJ LEU D 9 UNP P0A7V0 LYS 28 ENGINEERED MUTATION SEQADV 7OXJ ALA D 12 UNP P0A7V0 ILE 31 ENGINEERED MUTATION SEQRES 1 A 158 MET LYS VAL GLY GLN ASP LYS VAL VAL THR ILE ARG TYR SEQRES 2 A 158 THR LEU GLN VAL GLU GLY GLU VAL LEU ASP GLN GLY GLU SEQRES 3 A 158 LEU SER TYR LEU HIS GLY HIS ARG ASN LEU ILE PRO GLY SEQRES 4 A 158 LEU GLU GLU ALA LEU GLU GLY ARG GLU GLU GLY GLU ALA SEQRES 5 A 158 PHE GLN ALA HIS VAL PRO ALA GLU LYS ALA TYR GLY PRO SEQRES 6 A 158 HIS ASP PRO GLU GLY VAL GLN VAL VAL PRO LEU SER ALA SEQRES 7 A 158 PHE PRO GLU ASP ALA GLU VAL VAL PRO GLY ALA GLN PHE SEQRES 8 A 158 TYR ALA GLN ASP MET GLU GLY ASN PRO MET PRO LEU THR SEQRES 9 A 158 VAL VAL ALA VAL GLU GLY GLU GLU VAL THR VAL ASP PHE SEQRES 10 A 158 ASN HIS PRO LEU ALA GLY LYS ASP LEU ASP PHE GLN VAL SEQRES 11 A 158 GLU VAL VAL LYS VAL ARG GLU ALA THR PRO GLU GLU LEU SEQRES 12 A 158 LEU HIS GLY HIS ALA HIS PRO SER GLY HIS HIS HIS HIS SEQRES 13 A 158 HIS HIS SEQRES 1 D 15 THR ARG TYR TRP ASN ALA LYS ALA LEU PRO PHE ALA PHE SEQRES 2 D 15 GLY ALA SEQRES 1 E 2 UNK UNK HET NI A 201 1 HET PGE A 202 10 HET PG4 A 203 13 HET PGE A 204 10 HET MG A 205 1 HET CL A 206 1 HETNAM NI NICKEL (II) ION HETNAM PGE TRIETHYLENE GLYCOL HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 4 NI NI 2+ FORMUL 5 PGE 2(C6 H14 O4) FORMUL 6 PG4 C8 H18 O5 FORMUL 8 MG MG 2+ FORMUL 9 CL CL 1- FORMUL 10 HOH *86(H2 O) HELIX 1 AA1 ILE A 37 GLU A 45 1 9 HELIX 2 AA2 PRO A 58 ALA A 62 5 5 HELIX 3 AA3 ASP A 67 GLU A 69 5 3 HELIX 4 AA4 SER A 77 PHE A 79 5 3 HELIX 5 AA5 THR A 139 GLY A 146 1 8 SHEET 1 AA1 5 ALA A 52 VAL A 57 0 SHEET 2 AA1 5 LEU A 126 GLU A 137 -1 O PHE A 128 N ALA A 55 SHEET 3 AA1 5 LYS A 7 VAL A 17 -1 N THR A 10 O LYS A 134 SHEET 4 AA1 5 GLU A 20 LEU A 30 -1 O ASP A 23 N LEU A 15 SHEET 5 AA1 5 HIS A 153 HIS A 155 -1 O HIS A 155 N GLU A 26 SHEET 1 AA2 4 VAL A 71 PRO A 75 0 SHEET 2 AA2 4 GLU A 112 ASP A 116 -1 O VAL A 113 N VAL A 74 SHEET 3 AA2 4 PRO A 100 GLU A 109 -1 N VAL A 106 O THR A 114 SHEET 4 AA2 4 GLN A 90 GLN A 94 -1 N ALA A 93 O MET A 101 LINK OE2 GLU A 97 NI NI A 201 1555 1555 1.96 LINK NI NI A 201 O HOH A 308 1555 5554 2.02 LINK NI NI A 201 O HOH A 311 1555 5554 2.17 LINK NI NI A 201 O HOH A 315 1555 5664 2.12 LINK NI NI A 201 O HOH A 320 1555 1555 2.17 LINK NI NI A 201 O HOH A 345 1555 1555 2.15 LINK MG MG A 205 O HOH A 306 1555 1555 2.04 LINK MG MG A 205 O HOH A 306 1555 4465 2.04 LINK MG MG A 205 O HOH A 316 1555 1555 2.19 LINK MG MG A 205 O HOH A 316 1555 4465 2.19 LINK MG MG A 205 O HOH A 333 1555 1565 1.92 CISPEP 1 HIS A 149 PRO A 150 0 -7.13 CISPEP 2 LEU D 9 PRO D 10 0 6.84 CRYST1 49.282 49.282 130.700 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020291 0.011715 0.000000 0.00000 SCALE2 0.000000 0.023430 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007651 0.00000