HEADER IMMUNE SYSTEM 22-JUN-21 7OXN TITLE CRYSTAL STRUCTURE OF TAP01 IN COMPLEX WITH CYCLISED AMYLOID BETA TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAP01 FAMILY ANTIBODY HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TAP01 FAMILY ANTIBODY LIGHT CHAIN; COMPND 7 CHAIN: K; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: AMYLOID-BETA PRECURSOR PROTEIN; COMPND 11 CHAIN: A; COMPND 12 SYNONYM: APP,ABPP,APPI,ALZHEIMER DISEASE AMYLOID A4 PROTEIN HOMOLOG, COMPND 13 ALZHEIMER DISEASE AMYLOID PROTEIN,AMYLOID PRECURSOR PROTEIN,AMYLOID- COMPND 14 BETA (A4) PRECURSOR PROTEIN,AMYLOID-BETA A4 PROTEIN,CEREBRAL VASCULAR COMPND 15 AMYLOID PEPTIDE,CVAP,PREA4,PROTEASE NEXIN-II,PN-II; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS ALZHEIMER'S DISEASE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR G.HALL,R.COWAN,M.D.CARR REVDAT 2 31-JAN-24 7OXN 1 JRNL REVDAT 1 29-JUN-22 7OXN 0 JRNL AUTH P.BAKRANIA,G.HALL,Y.BOUTER,C.BOUTER,N.BEINDORFF,R.COWAN, JRNL AUTH 2 S.DAVIES,J.PRICE,C.MPAMHANGA,E.LOVE,D.MATTHEWS,M.D.CARR, JRNL AUTH 3 T.A.BAYER JRNL TITL DISCOVERY OF A NOVEL PSEUDO BETA-HAIRPIN STRUCTURE OF JRNL TITL 2 N-TRUNCATED AMYLOID-BETA FOR USE AS A VACCINE AGAINST JRNL TITL 3 ALZHEIMER'S DISEASE. JRNL REF MOL PSYCHIATRY V. 27 840 2022 JRNL REFN ESSN 1476-5578 JRNL PMID 34776512 JRNL DOI 10.1038/S41380-021-01385-7 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 1078 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3368 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 125 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OXN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1292116537. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16607 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 67.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7OW1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 6K 0.1 M HEPES, PH 7.0 0.01 M REMARK 280 ZINC CHLORIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 39.37858 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.74700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.20486 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 39.37858 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.74700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 62.20486 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, K, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH K 354 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR H 134 REMARK 465 SER H 135 REMARK 465 GLY H 136 REMARK 465 SER H 218 REMARK 465 CYS H 219 REMARK 465 CYS K 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD22 ASN K 31 HG1 THR K 51 1.04 REMARK 500 HCS3 SMC A 3 SG CYS A 12 1.05 REMARK 500 HD1 HIS A 14 ZN ZN A 101 1.22 REMARK 500 HD1 HIS K 198 H GLY K 200 1.29 REMARK 500 HH TYR H 94 O GLY K 42 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HE2 HIS K 189 ZN ZN A 101 4454 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP H 88 1.02 -66.23 REMARK 500 SER H 99 -156.23 -101.89 REMARK 500 ASP H 147 70.28 61.50 REMARK 500 ASN H 207 56.50 31.32 REMARK 500 LEU K 47 -60.54 -95.82 REMARK 500 THR K 51 -56.46 75.98 REMARK 500 ASN K 77 70.35 41.91 REMARK 500 ASN K 138 70.71 53.23 REMARK 500 ASP K 151 60.59 39.38 REMARK 500 ASN K 152 -12.09 74.81 REMARK 500 GLN K 166 122.87 -37.73 REMARK 500 ARG K 211 95.76 -54.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 EDO H 301 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP K 185 OD1 REMARK 620 2 HIS K 189 NE2 117.0 REMARK 620 3 GLU A 11 OE2 105.1 131.4 REMARK 620 4 HIS A 14 ND1 107.1 130.7 2.9 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7OW1 RELATED DB: PDB DBREF 7OXN H 1 219 PDB 7OXN 7OXN 1 219 DBREF 7OXN K 1 214 PDB 7OXN 7OXN 1 214 DBREF 7OXN A 1 14 UNP P05067 A4_HUMAN 672 685 SEQADV 7OXN SMC A 3 UNP P05067 GLU 674 ENGINEERED MUTATION SEQADV 7OXN CYS A 12 UNP P05067 VAL 683 ENGINEERED MUTATION SEQRES 1 H 219 GLN VAL GLN LEU LYS GLN SER GLY PRO GLY LEU VAL GLN SEQRES 2 H 219 PRO SER GLN SER LEU SER ILE THR CYS THR VAL SER GLY SEQRES 3 H 219 PHE SER LEU THR SER TYR GLY ILE HIS TRP VAL ARG GLN SEQRES 4 H 219 SER PRO GLY LYS GLY LEU GLU TRP LEU GLY VAL MET TRP SEQRES 5 H 219 SER GLY GLY ILE THR ASP PHE TYR ALA ALA PHE ILE SER SEQRES 6 H 219 ARG LEU SER ILE SER ARG ASP ILE SER LYS SER GLN VAL SEQRES 7 H 219 PHE PHE LYS MET ASN SER LEU GLN ALA ASP ASP THR ALA SEQRES 8 H 219 ILE TYR TYR CYS ALA ARG GLY SER ARG TYR ALA LEU ASP SEQRES 9 H 219 TYR TRP GLY GLN GLY THR SER VAL SER VAL SER SER ALA SEQRES 10 H 219 SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SEQRES 11 H 219 SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS SEQRES 12 H 219 LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER SEQRES 13 H 219 TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE SEQRES 14 H 219 PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SEQRES 15 H 219 SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN SEQRES 16 H 219 THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR SEQRES 17 H 219 LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS SEQRES 1 K 214 ASP ILE GLN MET THR GLN THR THR SER SER LEU SER ALA SEQRES 2 K 214 SER LEU GLY ASP ARG VAL THR ILE SER CYS ARG ALA SER SEQRES 3 K 214 GLN ASP ILE SER ASN TYR LEU ASN TRP TYR GLN GLN LYS SEQRES 4 K 214 PRO ASP GLY THR VAL LYS LEU LEU ILE TYR TYR THR SER SEQRES 5 K 214 ARG LEU HIS SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 K 214 GLY SER GLY THR ASP TYR SER LEU THR ILE SER ASN LEU SEQRES 7 K 214 GLU GLN GLU ASP ILE ALA THR TYR PHE CYS GLN GLN GLY SEQRES 8 K 214 ASN THR LEU PRO PRO THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 K 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 K 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 K 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 K 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 K 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 K 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 K 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 K 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 K 214 PHE ASN ARG GLY GLU CYS SEQRES 1 A 14 ASP ALA SMC PHE ARG HIS ASP SER GLY TYR GLU CYS HIS SEQRES 2 A 14 HIS HET SMC A 3 14 HET EDO H 301 10 HET ZN A 101 1 HETNAM SMC S-METHYLCYSTEINE HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SMC C4 H9 N O2 S FORMUL 4 EDO C2 H6 O2 FORMUL 5 ZN ZN 2+ FORMUL 6 HOH *125(H2 O) HELIX 1 AA1 ALA H 61 ILE H 64 5 4 HELIX 2 AA2 GLN H 86 THR H 90 5 5 HELIX 3 AA3 SER H 159 ALA H 161 5 3 HELIX 4 AA4 SER H 190 LEU H 192 5 3 HELIX 5 AA5 LYS H 204 ASN H 207 5 4 HELIX 6 AA6 GLU K 79 ILE K 83 5 5 HELIX 7 AA7 SER K 121 LYS K 126 1 6 HELIX 8 AA8 LYS K 183 GLU K 187 1 5 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O THR H 23 N LYS H 5 SHEET 3 AA1 4 GLN H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 AA1 4 LEU H 67 ASP H 72 -1 N ASP H 72 O GLN H 77 SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 THR H 110 VAL H 114 1 O SER H 113 N VAL H 12 SHEET 3 AA2 6 ALA H 91 GLY H 98 -1 N ALA H 91 O VAL H 112 SHEET 4 AA2 6 GLY H 33 GLN H 39 -1 N VAL H 37 O TYR H 94 SHEET 5 AA2 6 LEU H 45 MET H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 THR H 57 PHE H 59 -1 O ASP H 58 N VAL H 50 SHEET 1 AA3 4 LEU H 11 VAL H 12 0 SHEET 2 AA3 4 THR H 110 VAL H 114 1 O SER H 113 N VAL H 12 SHEET 3 AA3 4 ALA H 91 GLY H 98 -1 N ALA H 91 O VAL H 112 SHEET 4 AA3 4 LEU H 103 TRP H 106 -1 O TYR H 105 N ARG H 97 SHEET 1 AA4 4 SER H 123 LEU H 127 0 SHEET 2 AA4 4 THR H 138 TYR H 148 -1 O LEU H 144 N PHE H 125 SHEET 3 AA4 4 TYR H 179 PRO H 188 -1 O LEU H 181 N VAL H 145 SHEET 4 AA4 4 VAL H 166 THR H 168 -1 N HIS H 167 O VAL H 184 SHEET 1 AA5 4 SER H 123 LEU H 127 0 SHEET 2 AA5 4 THR H 138 TYR H 148 -1 O LEU H 144 N PHE H 125 SHEET 3 AA5 4 TYR H 179 PRO H 188 -1 O LEU H 181 N VAL H 145 SHEET 4 AA5 4 VAL H 172 LEU H 173 -1 N VAL H 172 O SER H 180 SHEET 1 AA6 3 THR H 154 TRP H 157 0 SHEET 2 AA6 3 ILE H 198 HIS H 203 -1 O ASN H 200 N SER H 156 SHEET 3 AA6 3 THR H 208 LYS H 213 -1 O THR H 208 N HIS H 203 SHEET 1 AA7 4 MET K 4 THR K 5 0 SHEET 2 AA7 4 VAL K 19 ALA K 25 -1 O ARG K 24 N THR K 5 SHEET 3 AA7 4 ASP K 70 ILE K 75 -1 O LEU K 73 N ILE K 21 SHEET 4 AA7 4 PHE K 62 SER K 67 -1 N SER K 63 O THR K 74 SHEET 1 AA8 6 SER K 10 ALA K 13 0 SHEET 2 AA8 6 THR K 102 ILE K 106 1 O GLU K 105 N ALA K 13 SHEET 3 AA8 6 THR K 85 GLN K 90 -1 N TYR K 86 O THR K 102 SHEET 4 AA8 6 LEU K 33 GLN K 38 -1 N GLN K 38 O THR K 85 SHEET 5 AA8 6 VAL K 44 TYR K 49 -1 O LEU K 47 N TRP K 35 SHEET 6 AA8 6 ARG K 53 LEU K 54 -1 O ARG K 53 N TYR K 49 SHEET 1 AA9 4 SER K 10 ALA K 13 0 SHEET 2 AA9 4 THR K 102 ILE K 106 1 O GLU K 105 N ALA K 13 SHEET 3 AA9 4 THR K 85 GLN K 90 -1 N TYR K 86 O THR K 102 SHEET 4 AA9 4 THR K 97 PHE K 98 -1 O THR K 97 N GLN K 90 SHEET 1 AB1 4 SER K 114 PHE K 118 0 SHEET 2 AB1 4 THR K 129 PHE K 139 -1 O LEU K 135 N PHE K 116 SHEET 3 AB1 4 TYR K 173 SER K 182 -1 O TYR K 173 N PHE K 139 SHEET 4 AB1 4 SER K 159 VAL K 163 -1 N SER K 162 O SER K 176 SHEET 1 AB2 4 ALA K 153 LEU K 154 0 SHEET 2 AB2 4 LYS K 145 VAL K 150 -1 N VAL K 150 O ALA K 153 SHEET 3 AB2 4 VAL K 191 THR K 197 -1 O GLU K 195 N GLN K 147 SHEET 4 AB2 4 VAL K 205 ASN K 210 -1 O VAL K 205 N VAL K 196 SHEET 1 AB3 2 SMC A 3 PHE A 4 0 SHEET 2 AB3 2 GLU A 11 HIS A 13 -1 O HIS A 13 N SMC A 3 SSBOND 1 CYS H 22 CYS H 95 1555 1555 2.05 SSBOND 2 CYS H 143 CYS H 199 1555 1555 2.00 SSBOND 3 CYS K 23 CYS K 88 1555 1555 2.08 SSBOND 4 CYS K 134 CYS K 194 1555 1555 2.02 LINK C ALA A 2 N SMC A 3 1555 1555 1.34 LINK C SMC A 3 N PHE A 4 1555 1555 1.34 LINK CS SMC A 3 SG CYS A 12 1555 1555 1.62 LINK OD1 ASP K 185 ZN ZN A 101 1555 4454 1.87 LINK NE2 HIS K 189 ZN ZN A 101 1555 4454 2.31 LINK OE2 GLU A 11 ZN ZN A 101 1555 1555 2.04 LINK ND1 HIS A 14 ZN ZN A 101 1555 1555 2.04 CISPEP 1 PHE H 149 PRO H 150 0 -7.67 CISPEP 2 GLU H 151 PRO H 152 0 1.17 CISPEP 3 LEU K 94 PRO K 95 0 0.87 CISPEP 4 TYR K 140 PRO K 141 0 3.76 CRYST1 80.831 47.494 124.427 90.00 90.96 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012371 0.000000 0.000206 0.00000 SCALE2 0.000000 0.021055 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008038 0.00000