HEADER TRANSFERASE 01-JUL-21 7P1L TITLE THE MARK3 KINASE DOMAIN BOUND TO AA-CS-1-008 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAP/MICROTUBULE AFFINITY-REGULATING KINASE 3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: C-TAK1,CTAK1,CDC25C-ASSOCIATED PROTEIN KINASE 1,ELKL MOTIF COMPND 5 KINASE 2,EMK-2,PROTEIN KINASE STK10,SER/THR PROTEIN KINASE PAR-1,PAR- COMPND 6 1A,SERINE/THREONINE-PROTEIN KINASE P78; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MARK3, CTAK1, EMK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS KINASE INHIBITOR ACTIVE SITE FOLDED ACTIVATION LOOP UBA DOMAIN, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.DEDERER,F.PREUSS,D.CHATTERJEE,A.VLASSOVA,S.MATHEA,A.AXTMAN,S.KNAPP REVDAT 4 31-JAN-24 7P1L 1 REMARK REVDAT 3 09-FEB-22 7P1L 1 JRNL REVDAT 2 10-NOV-21 7P1L 1 JRNL REVDAT 1 14-JUL-21 7P1L 0 SPRSDE 14-JUL-21 7P1L 7O94 JRNL AUTH D.H.DREWRY,J.K.ANNOR-GYAMFI,C.I.WELLS,J.E.PICKETT,V.DEDERER, JRNL AUTH 2 F.PREUSS,S.MATHEA,A.D.AXTMAN JRNL TITL IDENTIFICATION OF PYRIMIDINE-BASED LEAD COMPOUNDS FOR JRNL TITL 2 UNDERSTUDIED KINASES IMPLICATED IN DRIVING JRNL TITL 3 NEURODEGENERATION. JRNL REF J.MED.CHEM. V. 65 1313 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 34333981 JRNL DOI 10.1021/ACS.JMEDCHEM.1C00440 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 47358 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2398 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8700 - 5.0100 0.97 2683 124 0.1898 0.2047 REMARK 3 2 5.0100 - 3.9800 0.99 2691 117 0.1633 0.1508 REMARK 3 3 3.9800 - 3.4800 0.99 2670 147 0.1897 0.2475 REMARK 3 4 3.4800 - 3.1600 0.97 2603 149 0.2192 0.2568 REMARK 3 5 3.1600 - 2.9300 0.98 2636 150 0.2279 0.2748 REMARK 3 6 2.9300 - 2.7600 0.99 2636 152 0.2182 0.2462 REMARK 3 7 2.7600 - 2.6200 0.99 2668 128 0.2222 0.2463 REMARK 3 8 2.6200 - 2.5100 0.99 2656 147 0.2303 0.2306 REMARK 3 9 2.5100 - 2.4100 1.00 2632 144 0.2207 0.2779 REMARK 3 10 2.4100 - 2.3300 1.00 2676 159 0.2254 0.2898 REMARK 3 11 2.3300 - 2.2500 0.97 2595 148 0.2387 0.2847 REMARK 3 12 2.2500 - 2.1900 0.98 2585 145 0.2438 0.2858 REMARK 3 13 2.1900 - 2.1300 0.99 2622 142 0.2372 0.2793 REMARK 3 14 2.1300 - 2.0800 0.99 2641 133 0.2349 0.2636 REMARK 3 15 2.0800 - 2.0300 0.99 2647 135 0.2399 0.3023 REMARK 3 16 2.0300 - 1.9900 0.99 2678 136 0.2789 0.3319 REMARK 3 17 1.9900 - 1.9500 0.99 2641 142 0.3124 0.3834 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.266 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.129 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4735 REMARK 3 ANGLE : 1.057 6415 REMARK 3 CHIRALITY : 0.065 741 REMARK 3 PLANARITY : 0.010 858 REMARK 3 DIHEDRAL : 5.605 706 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9387 9.2224 -0.7020 REMARK 3 T TENSOR REMARK 3 T11: 0.2370 T22: 0.2598 REMARK 3 T33: 0.2789 T12: -0.0218 REMARK 3 T13: -0.0199 T23: 0.0338 REMARK 3 L TENSOR REMARK 3 L11: 0.7822 L22: 1.9985 REMARK 3 L33: 1.5774 L12: 0.7558 REMARK 3 L13: 0.3848 L23: 1.3297 REMARK 3 S TENSOR REMARK 3 S11: -0.0471 S12: -0.0111 S13: -0.0489 REMARK 3 S21: 0.0076 S22: 0.1045 S23: -0.2408 REMARK 3 S31: -0.0310 S32: 0.1529 S33: 0.0031 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 195 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6076 18.4945 8.2076 REMARK 3 T TENSOR REMARK 3 T11: 0.3002 T22: 0.2530 REMARK 3 T33: 0.3263 T12: 0.0312 REMARK 3 T13: -0.0443 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 2.8345 L22: 3.4193 REMARK 3 L33: 1.4591 L12: 0.4006 REMARK 3 L13: -0.2676 L23: 0.5259 REMARK 3 S TENSOR REMARK 3 S11: -0.0275 S12: -0.0190 S13: -0.3464 REMARK 3 S21: -0.1931 S22: 0.1349 S23: -0.4424 REMARK 3 S31: 0.2734 S32: 0.1577 S33: -0.1226 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 268 THROUGH 365 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7937 10.9154 10.4892 REMARK 3 T TENSOR REMARK 3 T11: 0.3278 T22: 0.3146 REMARK 3 T33: 0.2301 T12: -0.0377 REMARK 3 T13: 0.0023 T23: 0.0440 REMARK 3 L TENSOR REMARK 3 L11: 0.8338 L22: 1.6431 REMARK 3 L33: 1.0570 L12: 0.9438 REMARK 3 L13: 0.7350 L23: 1.3187 REMARK 3 S TENSOR REMARK 3 S11: 0.1802 S12: -0.2253 S13: 0.0315 REMARK 3 S21: 0.4257 S22: -0.1760 S23: 0.0605 REMARK 3 S31: 0.2928 S32: -0.1968 S33: -0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 50 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.0979 40.8845 -33.5240 REMARK 3 T TENSOR REMARK 3 T11: 0.2467 T22: 0.2262 REMARK 3 T33: 0.2220 T12: -0.0202 REMARK 3 T13: 0.0059 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 1.8402 L22: 1.1116 REMARK 3 L33: 1.3233 L12: -0.9963 REMARK 3 L13: 0.7874 L23: -0.9206 REMARK 3 S TENSOR REMARK 3 S11: -0.0149 S12: -0.1509 S13: 0.0089 REMARK 3 S21: 0.1062 S22: 0.0068 S23: -0.0351 REMARK 3 S31: -0.0694 S32: -0.0804 S33: -0.0118 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 173 THROUGH 313 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.6689 28.6729 -20.7375 REMARK 3 T TENSOR REMARK 3 T11: 0.2380 T22: 0.2361 REMARK 3 T33: 0.2243 T12: -0.0165 REMARK 3 T13: -0.0272 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 1.5285 L22: 3.4311 REMARK 3 L33: 2.4037 L12: -0.6570 REMARK 3 L13: -0.2338 L23: -0.3649 REMARK 3 S TENSOR REMARK 3 S11: -0.0470 S12: -0.1313 S13: 0.1387 REMARK 3 S21: 0.3854 S22: -0.0641 S23: -0.0921 REMARK 3 S31: -0.0357 S32: 0.0594 S33: 0.1010 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 314 THROUGH 365 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.0404 50.8799 -46.7304 REMARK 3 T TENSOR REMARK 3 T11: 0.2749 T22: 0.3689 REMARK 3 T33: 0.3644 T12: -0.0743 REMARK 3 T13: -0.0027 T23: 0.0639 REMARK 3 L TENSOR REMARK 3 L11: 1.2587 L22: 1.2201 REMARK 3 L33: 1.8265 L12: -1.2329 REMARK 3 L13: 1.5020 L23: -1.3699 REMARK 3 S TENSOR REMARK 3 S11: -0.0002 S12: 0.2992 S13: 0.1014 REMARK 3 S21: 0.1698 S22: -0.3570 S23: -0.4059 REMARK 3 S31: -0.2659 S32: 0.5190 S33: 0.3671 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 50 through 51 or REMARK 3 (resid 52 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 54 REMARK 3 through 59 or (resid 60 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name CG or name CD )) or resid 61 through REMARK 3 90 or resid 92 through 110 or (resid 111 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 112 through 146 REMARK 3 or (resid 147 and (name N or name CA or REMARK 3 name C or name O or name CB )) or resid REMARK 3 148 through 170 or (resid 171 and (name N REMARK 3 or name CA or name C or name O or name CB REMARK 3 )) or resid 172 through 176 or (resid 177 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 178 through 223 REMARK 3 or resid 231 through 255 or (resid 256 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 257 or (resid REMARK 3 258 through 259 and (name N or name CA or REMARK 3 name C or name O or name CB )) or resid REMARK 3 260 through 268 or (resid 269 and (name N REMARK 3 or name CA or name C or name O or name CB REMARK 3 )) or resid 270 through 289 or (resid 290 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 291 through 292 REMARK 3 or (resid 293 through 294 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 295 through 302 or (resid 303 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 304 through 345 REMARK 3 or (resid 346 and (name N or name CA or REMARK 3 name C or name O or name CB or name CG )) REMARK 3 or resid 347 through 365)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and ((resid 50 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 51 through 52 or resid 54 REMARK 3 through 68 or (resid 69 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name CG )) or resid 70 through 90 or REMARK 3 resid 92 or (resid 93 and (name N or name REMARK 3 CA or name C or name O or name CB )) or REMARK 3 resid 94 through 95 or (resid 96 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 97 through 98 or REMARK 3 (resid 99 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG or name REMARK 3 CD )) or resid 100 or (resid 101 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or (resid 102 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name CG or name CD )) or resid 103 REMARK 3 through 116 or (resid 117 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 118 through 140 or (resid 141 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 142 through 150 REMARK 3 or (resid 151 and (name N or name CA or REMARK 3 name C or name O or name CB )) or resid REMARK 3 152 through 156 or (resid 157 and (name N REMARK 3 or name CA or name C or name O or name CB REMARK 3 )) or resid 158 through 199 or (resid 200 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 201 through 262 REMARK 3 or (resid 263 and (name N or name CA or REMARK 3 name C or name O or name CB )) or resid REMARK 3 264 through 296 or (resid 297 and (name N REMARK 3 or name CA or name C or name O or name CB REMARK 3 )) or resid 298 through 299 or (resid 300 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 301 through 316 REMARK 3 or (resid 317 and (name N or name CA or REMARK 3 name C or name O or name CB or name CG )) REMARK 3 or resid 318 through 341 or (resid 342 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB or name CG )) or resid 343 REMARK 3 through 365)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7P1L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1292116791. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00002 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47368 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 47.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.07939 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.54280 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.470 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER V7.1.015 REMARK 200 STARTING MODEL: 2QNJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM FORMATE PH 7.0 24% REMARK 280 PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.86650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 48 REMARK 465 GLU A 49 REMARK 465 GLY A 206 REMARK 465 GLY A 207 REMARK 465 LYS A 208 REMARK 465 LEU A 209 REMARK 465 ASP A 210 REMARK 465 THR A 211 REMARK 465 PHE A 212 REMARK 465 CYS A 213 REMARK 465 GLY A 214 REMARK 465 PHE A 224 REMARK 465 GLN A 225 REMARK 465 GLY A 226 REMARK 465 LYS A 227 REMARK 465 LYS A 228 REMARK 465 TYR A 229 REMARK 465 ARG A 366 REMARK 465 ALA A 367 REMARK 465 GLU A 368 REMARK 465 ASN A 369 REMARK 465 LEU A 370 REMARK 465 TYR A 371 REMARK 465 PHE A 372 REMARK 465 GLN A 373 REMARK 465 ASP B 48 REMARK 465 GLU B 49 REMARK 465 GLY B 206 REMARK 465 GLY B 207 REMARK 465 LYS B 208 REMARK 465 LEU B 209 REMARK 465 ASP B 210 REMARK 465 THR B 211 REMARK 465 PHE B 212 REMARK 465 CYS B 213 REMARK 465 GLY B 214 REMARK 465 PHE B 224 REMARK 465 GLN B 225 REMARK 465 GLY B 226 REMARK 465 LYS B 227 REMARK 465 LYS B 228 REMARK 465 TYR B 229 REMARK 465 ASP B 230 REMARK 465 ARG B 366 REMARK 465 ALA B 367 REMARK 465 GLU B 368 REMARK 465 ASN B 369 REMARK 465 LEU B 370 REMARK 465 TYR B 371 REMARK 465 PHE B 372 REMARK 465 GLN B 373 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 50 CG CD OE1 NE2 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 ASN A 66 CG OD1 ND2 REMARK 470 LYS A 69 CD CE NZ REMARK 470 ARG A 80 CZ NH1 NH2 REMARK 470 ASN A 93 CG OD1 ND2 REMARK 470 SER A 96 OG REMARK 470 GLN A 98 CG CD OE1 NE2 REMARK 470 LYS A 99 CE NZ REMARK 470 PHE A 101 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 102 NE CZ NH1 NH2 REMARK 470 ARG A 105 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 117 CG CD CE NZ REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 PHE A 141 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 151 CG CD CE NZ REMARK 470 LYS A 153 CD CE NZ REMARK 470 SER A 157 OG REMARK 470 ARG A 173 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 177 CD NE CZ NH1 NH2 REMARK 470 SER A 200 OG REMARK 470 ASP A 230 CG OD1 OD2 REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 ARG A 262 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 263 CG CD OE1 OE2 REMARK 470 LEU A 266 CG CD1 CD2 REMARK 470 ARG A 267 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 269 CD CE NZ REMARK 470 LYS A 294 CG CD CE NZ REMARK 470 THR A 297 OG1 CG2 REMARK 470 GLU A 299 CG CD OE1 OE2 REMARK 470 GLN A 300 CG CD OE1 NE2 REMARK 470 LYS A 303 CD CE NZ REMARK 470 GLU A 312 CG CD OE1 OE2 REMARK 470 GLU A 313 CG CD OE1 OE2 REMARK 470 LYS A 317 CD CE NZ REMARK 470 GLU A 323 CG CD OE1 OE2 REMARK 470 LEU A 324 CG CD1 CD2 REMARK 470 LYS A 330 CD CE NZ REMARK 470 GLN A 342 CD OE1 NE2 REMARK 470 LYS A 351 CE NZ REMARK 470 MET A 352 CG SD CE REMARK 470 HIS B 52 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 60 CE NZ REMARK 470 LYS B 64 CG CD CE NZ REMARK 470 ASN B 66 CG OD1 ND2 REMARK 470 LYS B 69 CE NZ REMARK 470 ARG B 80 CZ NH1 NH2 REMARK 470 GLN B 98 CG CD OE1 NE2 REMARK 470 ARG B 102 CZ NH1 NH2 REMARK 470 ARG B 105 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 111 CG OD1 ND2 REMARK 470 LYS B 117 CE NZ REMARK 470 GLU B 125 CG CD OE1 OE2 REMARK 470 LYS B 126 CG CD CE NZ REMARK 470 HIS B 147 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 151 CD CE NZ REMARK 470 LYS B 153 CD CE NZ REMARK 470 GLN B 171 CG CD OE1 NE2 REMARK 470 ARG B 173 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 177 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 256 CG CD OE1 NE2 REMARK 470 LEU B 258 CG CD1 CD2 REMARK 470 LYS B 259 CG CD CE NZ REMARK 470 ARG B 262 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 266 CG CD1 CD2 REMARK 470 ARG B 267 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 269 CG CD CE NZ REMARK 470 LEU B 290 CG CD1 CD2 REMARK 470 ILE B 293 CG1 CG2 CD1 REMARK 470 LYS B 294 CG CD CE NZ REMARK 470 GLU B 299 CG CD OE1 OE2 REMARK 470 LYS B 303 CG CD CE NZ REMARK 470 GLU B 312 CG CD OE1 OE2 REMARK 470 GLU B 313 CG CD OE1 OE2 REMARK 470 LYS B 317 CE NZ REMARK 470 GLU B 323 CG CD OE1 OE2 REMARK 470 LEU B 324 CG CD1 CD2 REMARK 470 LYS B 330 CD CE NZ REMARK 470 GLN B 346 CD OE1 NE2 REMARK 470 LYS B 351 CE NZ REMARK 470 MET B 352 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 66 -111.41 35.15 REMARK 500 ARG A 177 -12.41 80.04 REMARK 500 ASP A 178 48.47 -144.11 REMARK 500 ASP A 314 50.70 -143.55 REMARK 500 ARG B 177 -12.42 81.07 REMARK 500 ASP B 178 47.88 -143.31 REMARK 500 ASP B 314 48.24 -140.98 REMARK 500 REMARK 500 REMARK: NULL DBREF 7P1L A 48 366 UNP P27448 MARK3_HUMAN 48 366 DBREF 7P1L B 48 366 UNP P27448 MARK3_HUMAN 48 366 SEQADV 7P1L ALA A 367 UNP P27448 EXPRESSION TAG SEQADV 7P1L GLU A 368 UNP P27448 EXPRESSION TAG SEQADV 7P1L ASN A 369 UNP P27448 EXPRESSION TAG SEQADV 7P1L LEU A 370 UNP P27448 EXPRESSION TAG SEQADV 7P1L TYR A 371 UNP P27448 EXPRESSION TAG SEQADV 7P1L PHE A 372 UNP P27448 EXPRESSION TAG SEQADV 7P1L GLN A 373 UNP P27448 EXPRESSION TAG SEQADV 7P1L ALA B 367 UNP P27448 EXPRESSION TAG SEQADV 7P1L GLU B 368 UNP P27448 EXPRESSION TAG SEQADV 7P1L ASN B 369 UNP P27448 EXPRESSION TAG SEQADV 7P1L LEU B 370 UNP P27448 EXPRESSION TAG SEQADV 7P1L TYR B 371 UNP P27448 EXPRESSION TAG SEQADV 7P1L PHE B 372 UNP P27448 EXPRESSION TAG SEQADV 7P1L GLN B 373 UNP P27448 EXPRESSION TAG SEQRES 1 A 326 ASP GLU GLN PRO HIS ILE GLY ASN TYR ARG LEU LEU LYS SEQRES 2 A 326 THR ILE GLY LYS GLY ASN PHE ALA LYS VAL LYS LEU ALA SEQRES 3 A 326 ARG HIS ILE LEU THR GLY ARG GLU VAL ALA ILE LYS ILE SEQRES 4 A 326 ILE ASP LYS THR GLN LEU ASN PRO THR SER LEU GLN LYS SEQRES 5 A 326 LEU PHE ARG GLU VAL ARG ILE MET LYS ILE LEU ASN HIS SEQRES 6 A 326 PRO ASN ILE VAL LYS LEU PHE GLU VAL ILE GLU THR GLU SEQRES 7 A 326 LYS THR LEU TYR LEU ILE MET GLU TYR ALA SER GLY GLY SEQRES 8 A 326 GLU VAL PHE ASP TYR LEU VAL ALA HIS GLY ARG MET LYS SEQRES 9 A 326 GLU LYS GLU ALA ARG SER LYS PHE ARG GLN ILE VAL SER SEQRES 10 A 326 ALA VAL GLN TYR CYS HIS GLN LYS ARG ILE VAL HIS ARG SEQRES 11 A 326 ASP LEU LYS ALA GLU ASN LEU LEU LEU ASP ALA ASP MET SEQRES 12 A 326 ASN ILE LYS ILE ALA ASP PHE GLY PHE SER ASN GLU PHE SEQRES 13 A 326 THR VAL GLY GLY LYS LEU ASP THR PHE CYS GLY SER PRO SEQRES 14 A 326 PRO TYR ALA ALA PRO GLU LEU PHE GLN GLY LYS LYS TYR SEQRES 15 A 326 ASP GLY PRO GLU VAL ASP VAL TRP SER LEU GLY VAL ILE SEQRES 16 A 326 LEU TYR THR LEU VAL SER GLY SER LEU PRO PHE ASP GLY SEQRES 17 A 326 GLN ASN LEU LYS GLU LEU ARG GLU ARG VAL LEU ARG GLY SEQRES 18 A 326 LYS TYR ARG ILE PRO PHE TYR MET SER THR ASP CYS GLU SEQRES 19 A 326 ASN LEU LEU LYS ARG PHE LEU VAL LEU ASN PRO ILE LYS SEQRES 20 A 326 ARG GLY THR LEU GLU GLN ILE MET LYS ASP ARG TRP ILE SEQRES 21 A 326 ASN ALA GLY HIS GLU GLU ASP GLU LEU LYS PRO PHE VAL SEQRES 22 A 326 GLU PRO GLU LEU ASP ILE SER ASP GLN LYS ARG ILE ASP SEQRES 23 A 326 ILE MET VAL GLY MET GLY TYR SER GLN GLU GLU ILE GLN SEQRES 24 A 326 GLU SER LEU SER LYS MET LYS TYR ASP GLU ILE THR ALA SEQRES 25 A 326 THR TYR LEU LEU LEU GLY ARG ALA GLU ASN LEU TYR PHE SEQRES 26 A 326 GLN SEQRES 1 B 326 ASP GLU GLN PRO HIS ILE GLY ASN TYR ARG LEU LEU LYS SEQRES 2 B 326 THR ILE GLY LYS GLY ASN PHE ALA LYS VAL LYS LEU ALA SEQRES 3 B 326 ARG HIS ILE LEU THR GLY ARG GLU VAL ALA ILE LYS ILE SEQRES 4 B 326 ILE ASP LYS THR GLN LEU ASN PRO THR SER LEU GLN LYS SEQRES 5 B 326 LEU PHE ARG GLU VAL ARG ILE MET LYS ILE LEU ASN HIS SEQRES 6 B 326 PRO ASN ILE VAL LYS LEU PHE GLU VAL ILE GLU THR GLU SEQRES 7 B 326 LYS THR LEU TYR LEU ILE MET GLU TYR ALA SER GLY GLY SEQRES 8 B 326 GLU VAL PHE ASP TYR LEU VAL ALA HIS GLY ARG MET LYS SEQRES 9 B 326 GLU LYS GLU ALA ARG SER LYS PHE ARG GLN ILE VAL SER SEQRES 10 B 326 ALA VAL GLN TYR CYS HIS GLN LYS ARG ILE VAL HIS ARG SEQRES 11 B 326 ASP LEU LYS ALA GLU ASN LEU LEU LEU ASP ALA ASP MET SEQRES 12 B 326 ASN ILE LYS ILE ALA ASP PHE GLY PHE SER ASN GLU PHE SEQRES 13 B 326 THR VAL GLY GLY LYS LEU ASP THR PHE CYS GLY SER PRO SEQRES 14 B 326 PRO TYR ALA ALA PRO GLU LEU PHE GLN GLY LYS LYS TYR SEQRES 15 B 326 ASP GLY PRO GLU VAL ASP VAL TRP SER LEU GLY VAL ILE SEQRES 16 B 326 LEU TYR THR LEU VAL SER GLY SER LEU PRO PHE ASP GLY SEQRES 17 B 326 GLN ASN LEU LYS GLU LEU ARG GLU ARG VAL LEU ARG GLY SEQRES 18 B 326 LYS TYR ARG ILE PRO PHE TYR MET SER THR ASP CYS GLU SEQRES 19 B 326 ASN LEU LEU LYS ARG PHE LEU VAL LEU ASN PRO ILE LYS SEQRES 20 B 326 ARG GLY THR LEU GLU GLN ILE MET LYS ASP ARG TRP ILE SEQRES 21 B 326 ASN ALA GLY HIS GLU GLU ASP GLU LEU LYS PRO PHE VAL SEQRES 22 B 326 GLU PRO GLU LEU ASP ILE SER ASP GLN LYS ARG ILE ASP SEQRES 23 B 326 ILE MET VAL GLY MET GLY TYR SER GLN GLU GLU ILE GLN SEQRES 24 B 326 GLU SER LEU SER LYS MET LYS TYR ASP GLU ILE THR ALA SEQRES 25 B 326 THR TYR LEU LEU LEU GLY ARG ALA GLU ASN LEU TYR PHE SEQRES 26 B 326 GLN HET V5E A 401 29 HET EDO A 402 4 HET EDO A 403 4 HET V5E B 401 29 HET EDO B 402 4 HETNAM V5E 5-BROMO-4-N-[2-(1H-IMIDAZOL-5-YL)ETHYL]-2-N-[3- HETNAM 2 V5E (MORPHOLIN-4-YLMETHYL)PHENYL]PYRIMIDINE-2,4-DIAMINE HETNAM EDO 1,2-ETHANEDIOL HETSYN V5E 5-BROMANYL-4-N-[2-(1H-IMIDAZOL-5-YL)ETHYL]-2-N-[3- HETSYN 2 V5E (MORPHOLIN-4-YLMETHYL)PHENYL]PYRIMIDINE-2,4-DIAMINE; HETSYN 3 V5E 57593528 HETSYN EDO ETHYLENE GLYCOL FORMUL 3 V5E 2(C20 H24 BR N7 O) FORMUL 4 EDO 3(C2 H6 O2) FORMUL 8 HOH *103(H2 O) HELIX 1 AA1 THR A 90 LEU A 92 5 3 HELIX 2 AA2 ASN A 93 LEU A 110 1 18 HELIX 3 AA3 VAL A 140 GLY A 148 1 9 HELIX 4 AA4 LYS A 151 LYS A 172 1 22 HELIX 5 AA5 LYS A 180 GLU A 182 5 3 HELIX 6 AA6 SER A 200 THR A 204 5 5 HELIX 7 AA7 SER A 215 ALA A 219 5 5 HELIX 8 AA8 GLY A 231 GLY A 249 1 19 HELIX 9 AA9 ASN A 257 GLY A 268 1 12 HELIX 10 AB1 SER A 277 LEU A 288 1 12 HELIX 11 AB2 ASN A 291 ARG A 295 5 5 HELIX 12 AB3 THR A 297 MET A 302 1 6 HELIX 13 AB4 ASP A 304 ALA A 309 1 6 HELIX 14 AB5 ASP A 328 MET A 338 1 11 HELIX 15 AB6 SER A 341 MET A 352 1 12 HELIX 16 AB7 ASP A 355 GLY A 365 1 11 HELIX 17 AB8 THR B 90 LEU B 92 5 3 HELIX 18 AB9 ASN B 93 LEU B 110 1 18 HELIX 19 AC1 VAL B 140 GLY B 148 1 9 HELIX 20 AC2 LYS B 151 LYS B 172 1 22 HELIX 21 AC3 LYS B 180 GLU B 182 5 3 HELIX 22 AC4 SER B 200 THR B 204 5 5 HELIX 23 AC5 PRO B 232 GLY B 249 1 18 HELIX 24 AC6 ASN B 257 GLY B 268 1 12 HELIX 25 AC7 SER B 277 LEU B 288 1 12 HELIX 26 AC8 ASN B 291 ARG B 295 5 5 HELIX 27 AC9 THR B 297 MET B 302 1 6 HELIX 28 AD1 ASP B 328 MET B 338 1 11 HELIX 29 AD2 SER B 341 LYS B 351 1 11 HELIX 30 AD3 ASP B 355 LEU B 364 1 10 SHEET 1 AA1 6 HIS A 52 ILE A 53 0 SHEET 2 AA1 6 TYR A 56 GLY A 65 -1 O TYR A 56 N ILE A 53 SHEET 3 AA1 6 ALA A 68 HIS A 75 -1 O ARG A 74 N ARG A 57 SHEET 4 AA1 6 GLU A 81 ASP A 88 -1 O ILE A 86 N LYS A 69 SHEET 5 AA1 6 THR A 127 GLU A 133 -1 O MET A 132 N ALA A 83 SHEET 6 AA1 6 LEU A 118 GLU A 123 -1 N PHE A 119 O ILE A 131 SHEET 1 AA2 3 GLY A 138 GLU A 139 0 SHEET 2 AA2 3 LEU A 184 LEU A 186 -1 O LEU A 186 N GLY A 138 SHEET 3 AA2 3 ILE A 192 ILE A 194 -1 O LYS A 193 N LEU A 185 SHEET 1 AA3 6 HIS B 52 ILE B 53 0 SHEET 2 AA3 6 TYR B 56 LYS B 64 -1 O TYR B 56 N ILE B 53 SHEET 3 AA3 6 ALA B 68 HIS B 75 -1 O ARG B 74 N ARG B 57 SHEET 4 AA3 6 GLU B 81 ASP B 88 -1 O ILE B 86 N LYS B 69 SHEET 5 AA3 6 THR B 127 MET B 132 -1 O MET B 132 N ALA B 83 SHEET 6 AA3 6 LEU B 118 GLU B 123 -1 N PHE B 119 O ILE B 131 SHEET 1 AA4 3 GLY B 138 GLU B 139 0 SHEET 2 AA4 3 LEU B 184 LEU B 186 -1 O LEU B 186 N GLY B 138 SHEET 3 AA4 3 ILE B 192 ILE B 194 -1 O LYS B 193 N LEU B 185 CRYST1 50.989 95.733 68.579 90.00 91.98 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019612 0.000000 0.000679 0.00000 SCALE2 0.000000 0.010446 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014590 0.00000 MTRIX1 1 -0.385160 0.054071 0.921265 -25.47528 1 MTRIX2 1 -0.044632 -0.998205 0.039927 48.88119 1 MTRIX3 1 0.921770 -0.025740 0.386882 -33.51101 1