HEADER OXIDOREDUCTASE 08-JUL-21 7P3L TITLE ISOPENICILLIN N SYNTHASE IN COMPLEX WITH FE AND THE SUBSTRATE ANALOGUE TITLE 2 AADCYSHOMOCYS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPENICILLIN N SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IPNS; COMPND 5 EC: 1.21.3.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EMERICELLA NIDULANS FGSC A4; SOURCE 3 ORGANISM_TAXID: 227321; SOURCE 4 GENE: IPNA, IPS, AN2622; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: NM554; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ISOPENICILLIN N SYNTHASE, SUBSTRATE ANALOGUES, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.RABE,I.CLIFTON,C.J.SCHOFIELD REVDAT 3 31-JAN-24 7P3L 1 REMARK REVDAT 2 15-NOV-23 7P3L 1 ATOM REVDAT 1 20-JUL-22 7P3L 0 JRNL AUTH P.RABE,I.CLIFTON,C.J.SCHOFIELD JRNL TITL ISOPENICILLIN N SYNTHASE IN COMPLEX WITH FE AND THE JRNL TITL 2 SUBSTRATE ANALOGUE AADCYSHOMOCYS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 80586 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.480 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 58.3300 - 3.1800 1.00 5929 150 0.1345 0.1371 REMARK 3 2 3.1800 - 2.5300 1.00 5712 146 0.1389 0.1601 REMARK 3 3 2.5200 - 2.2100 1.00 5656 143 0.1248 0.1446 REMARK 3 4 2.2100 - 2.0000 1.00 5633 144 0.1212 0.1668 REMARK 3 5 2.0000 - 1.8600 1.00 5600 142 0.1316 0.1620 REMARK 3 6 1.8600 - 1.7500 1.00 5601 143 0.1419 0.1924 REMARK 3 7 1.7500 - 1.6600 1.00 5569 141 0.1459 0.1804 REMARK 3 8 1.6600 - 1.5900 1.00 5584 143 0.1553 0.1985 REMARK 3 9 1.5900 - 1.5300 1.00 5565 141 0.1764 0.1907 REMARK 3 10 1.5300 - 1.4800 1.00 5546 141 0.2074 0.2533 REMARK 3 11 1.4800 - 1.4300 1.00 5572 142 0.2364 0.2836 REMARK 3 12 1.4300 - 1.3900 1.00 5530 141 0.2658 0.2829 REMARK 3 13 1.3900 - 1.3500 1.00 5556 142 0.2822 0.2756 REMARK 3 14 1.3500 - 1.3200 1.00 5534 140 0.3048 0.3102 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9787 33.4460 -17.7598 REMARK 3 T TENSOR REMARK 3 T11: 0.1154 T22: 0.1445 REMARK 3 T33: 0.0775 T12: -0.0025 REMARK 3 T13: -0.0366 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 2.2457 L22: 2.4420 REMARK 3 L33: 3.4908 L12: -0.5973 REMARK 3 L13: -1.2174 L23: 0.8589 REMARK 3 S TENSOR REMARK 3 S11: -0.0632 S12: 0.1930 S13: 0.0279 REMARK 3 S21: -0.0925 S22: -0.0089 S23: 0.0128 REMARK 3 S31: -0.0146 S32: -0.2860 S33: 0.0907 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3015 25.4849 -0.0471 REMARK 3 T TENSOR REMARK 3 T11: 0.0827 T22: 0.1295 REMARK 3 T33: 0.1232 T12: -0.0029 REMARK 3 T13: 0.0097 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.9826 L22: 2.0258 REMARK 3 L33: 2.8653 L12: 0.2555 REMARK 3 L13: 0.3041 L23: -0.7761 REMARK 3 S TENSOR REMARK 3 S11: -0.0045 S12: -0.0124 S13: -0.0504 REMARK 3 S21: 0.0107 S22: 0.0439 S23: 0.0854 REMARK 3 S31: 0.1645 S32: -0.1370 S33: -0.0676 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0902 31.6720 15.4729 REMARK 3 T TENSOR REMARK 3 T11: 0.1107 T22: 0.1206 REMARK 3 T33: 0.1052 T12: 0.0063 REMARK 3 T13: -0.0176 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.9304 L22: 0.6756 REMARK 3 L33: 2.8648 L12: -0.3773 REMARK 3 L13: -1.3818 L23: 0.9903 REMARK 3 S TENSOR REMARK 3 S11: 0.0031 S12: -0.1651 S13: 0.0557 REMARK 3 S21: 0.0594 S22: 0.0334 S23: -0.0484 REMARK 3 S31: 0.0056 S32: 0.1329 S33: -0.0441 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7322 25.9816 10.8912 REMARK 3 T TENSOR REMARK 3 T11: 0.1249 T22: 0.1491 REMARK 3 T33: 0.0957 T12: 0.0239 REMARK 3 T13: -0.0261 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 4.4146 L22: 3.8534 REMARK 3 L33: 1.4603 L12: 3.0053 REMARK 3 L13: -1.2569 L23: -0.6303 REMARK 3 S TENSOR REMARK 3 S11: 0.1109 S12: -0.2499 S13: 0.0193 REMARK 3 S21: 0.2139 S22: -0.0899 S23: -0.0325 REMARK 3 S31: 0.1089 S32: 0.1876 S33: 0.0017 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6995 28.9962 -8.5880 REMARK 3 T TENSOR REMARK 3 T11: 0.0966 T22: 0.1064 REMARK 3 T33: 0.0973 T12: 0.0084 REMARK 3 T13: 0.0046 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.6550 L22: 1.1725 REMARK 3 L33: 2.6640 L12: -0.1620 REMARK 3 L13: 0.2859 L23: -1.0672 REMARK 3 S TENSOR REMARK 3 S11: -0.0282 S12: 0.1021 S13: 0.0017 REMARK 3 S21: -0.1189 S22: -0.0008 S23: -0.0427 REMARK 3 S31: 0.0832 S32: 0.1126 S33: 0.0415 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2816 40.9278 10.8888 REMARK 3 T TENSOR REMARK 3 T11: 0.1138 T22: 0.1231 REMARK 3 T33: 0.1118 T12: 0.0135 REMARK 3 T13: -0.0042 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 0.7934 L22: 1.9427 REMARK 3 L33: 1.7917 L12: 0.0788 REMARK 3 L13: -0.2794 L23: -0.5833 REMARK 3 S TENSOR REMARK 3 S11: 0.0339 S12: -0.0773 S13: 0.1510 REMARK 3 S21: 0.2299 S22: 0.0243 S23: 0.1870 REMARK 3 S31: -0.2297 S32: -0.1715 S33: -0.0669 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 215 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7630 39.9185 -5.4538 REMARK 3 T TENSOR REMARK 3 T11: 0.1198 T22: 0.1129 REMARK 3 T33: 0.0990 T12: 0.0231 REMARK 3 T13: -0.0187 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.9668 L22: 1.0447 REMARK 3 L33: 1.4627 L12: 0.0478 REMARK 3 L13: -0.5864 L23: 0.3403 REMARK 3 S TENSOR REMARK 3 S11: 0.0567 S12: 0.1037 S13: 0.1430 REMARK 3 S21: -0.1059 S22: -0.0494 S23: 0.0760 REMARK 3 S31: -0.1542 S32: -0.1526 S33: -0.0165 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 270 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3303 35.8590 5.0002 REMARK 3 T TENSOR REMARK 3 T11: 0.0967 T22: 0.1187 REMARK 3 T33: 0.1175 T12: -0.0052 REMARK 3 T13: -0.0121 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 0.5401 L22: 0.7923 REMARK 3 L33: 1.6052 L12: -0.0677 REMARK 3 L13: -0.7656 L23: -0.1088 REMARK 3 S TENSOR REMARK 3 S11: -0.0003 S12: -0.0026 S13: 0.0084 REMARK 3 S21: 0.0134 S22: -0.0189 S23: 0.1183 REMARK 3 S31: -0.0046 S32: -0.0993 S33: 0.0215 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1302 46.7582 -13.6290 REMARK 3 T TENSOR REMARK 3 T11: 0.2041 T22: 0.1838 REMARK 3 T33: 0.1789 T12: -0.0115 REMARK 3 T13: 0.0439 T23: 0.0266 REMARK 3 L TENSOR REMARK 3 L11: 1.8181 L22: 4.1585 REMARK 3 L33: 7.0178 L12: -0.2540 REMARK 3 L13: 1.1894 L23: -2.7970 REMARK 3 S TENSOR REMARK 3 S11: 0.0200 S12: 0.3255 S13: 0.3440 REMARK 3 S21: -0.2236 S22: -0.0959 S23: -0.1404 REMARK 3 S31: -0.6409 S32: 0.3364 S33: 0.0946 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 313 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9173 44.6740 5.4692 REMARK 3 T TENSOR REMARK 3 T11: 0.1848 T22: 0.1358 REMARK 3 T33: 0.1798 T12: -0.0244 REMARK 3 T13: -0.0259 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 4.9998 L22: 2.7523 REMARK 3 L33: 9.4049 L12: -3.0155 REMARK 3 L13: -5.5579 L23: 3.2023 REMARK 3 S TENSOR REMARK 3 S11: 0.0884 S12: -0.3280 S13: 0.3459 REMARK 3 S21: 0.0573 S22: 0.1281 S23: -0.1996 REMARK 3 S31: -0.2469 S32: 0.3172 S33: -0.2663 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7P3L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1292110375. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JAN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80679 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.320 REMARK 200 RESOLUTION RANGE LOW (A) : 58.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : 0.16700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : 2.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1BLZ REMARK 200 REMARK 200 REMARK: PLATE, 250 UM LENGTH REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M LI2SO4, 0.1 M TRIS PH 8.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.49000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.54000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.71000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.54000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.49000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.71000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 LYS A 59 NZ REMARK 470 LYS A 80 CD CE NZ REMARK 470 ARG A 173 CZ NH1 NH2 REMARK 470 LYS A 176 CE NZ REMARK 470 LYS A 201 CE NZ REMARK 470 LYS A 305 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 224 O HOH A 502 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 87 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 188 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 TYR A 191 CB - CG - CD1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 -110.14 -96.76 REMARK 500 HIS A 82 63.46 -103.99 REMARK 500 LYS A 97 -43.72 -134.66 REMARK 500 THR A 123 -8.02 79.82 REMARK 500 ASN A 230 -25.67 -152.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 927 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 928 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A 929 DISTANCE = 6.13 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 214 NE2 REMARK 620 2 ASP A 216 OD1 94.0 REMARK 620 3 HIS A 270 NE2 83.6 83.1 REMARK 620 4 CYS A 408 SG 91.6 81.2 163.2 REMARK 620 5 KCY A 409 SD 87.1 178.0 98.7 97.1 REMARK 620 6 HOH A 574 O 173.7 84.7 90.1 94.2 94.4 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BLZ RELATED DB: PDB REMARK 900 RELATED ID: 1BK0 RELATED DB: PDB DBREF 7P3L A 1 331 UNP P05326 IPNS_EMENI 1 331 SEQRES 1 A 331 MET GLY SER VAL SER LYS ALA ASN VAL PRO LYS ILE ASP SEQRES 2 A 331 VAL SER PRO LEU PHE GLY ASP ASP GLN ALA ALA LYS MET SEQRES 3 A 331 ARG VAL ALA GLN GLN ILE ASP ALA ALA SER ARG ASP THR SEQRES 4 A 331 GLY PHE PHE TYR ALA VAL ASN HIS GLY ILE ASN VAL GLN SEQRES 5 A 331 ARG LEU SER GLN LYS THR LYS GLU PHE HIS MET SER ILE SEQRES 6 A 331 THR PRO GLU GLU LYS TRP ASP LEU ALA ILE ARG ALA TYR SEQRES 7 A 331 ASN LYS GLU HIS GLN ASP GLN VAL ARG ALA GLY TYR TYR SEQRES 8 A 331 LEU SER ILE PRO GLY LYS LYS ALA VAL GLU SER PHE CYS SEQRES 9 A 331 TYR LEU ASN PRO ASN PHE THR PRO ASP HIS PRO ARG ILE SEQRES 10 A 331 GLN ALA LYS THR PRO THR HIS GLU VAL ASN VAL TRP PRO SEQRES 11 A 331 ASP GLU THR LYS HIS PRO GLY PHE GLN ASP PHE ALA GLU SEQRES 12 A 331 GLN TYR TYR TRP ASP VAL PHE GLY LEU SER SER ALA LEU SEQRES 13 A 331 LEU LYS GLY TYR ALA LEU ALA LEU GLY LYS GLU GLU ASN SEQRES 14 A 331 PHE PHE ALA ARG HIS PHE LYS PRO ASP ASP THR LEU ALA SEQRES 15 A 331 SER VAL VAL LEU ILE ARG TYR PRO TYR LEU ASP PRO TYR SEQRES 16 A 331 PRO GLU ALA ALA ILE LYS THR ALA ALA ASP GLY THR LYS SEQRES 17 A 331 LEU SER PHE GLU TRP HIS GLU ASP VAL SER LEU ILE THR SEQRES 18 A 331 VAL LEU TYR GLN SER ASN VAL GLN ASN LEU GLN VAL GLU SEQRES 19 A 331 THR ALA ALA GLY TYR GLN ASP ILE GLU ALA ASP ASP THR SEQRES 20 A 331 GLY TYR LEU ILE ASN CYS GLY SER TYR MET ALA HIS LEU SEQRES 21 A 331 THR ASN ASN TYR TYR LYS ALA PRO ILE HIS ARG VAL LYS SEQRES 22 A 331 TRP VAL ASN ALA GLU ARG GLN SER LEU PRO PHE PHE VAL SEQRES 23 A 331 ASN LEU GLY TYR ASP SER VAL ILE ASP PRO PHE ASP PRO SEQRES 24 A 331 ARG GLU PRO ASN GLY LYS SER ASP ARG GLU PRO LEU SER SEQRES 25 A 331 TYR GLY ASP TYR LEU GLN ASN GLY LEU VAL SER LEU ILE SEQRES 26 A 331 ASN LYS ASN GLY GLN THR HET FE A 401 1 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET GOL A 405 14 HET GOL A 406 14 HET UN1 A 407 19 HET CYS A 408 10 HET KCY A 409 14 HETNAM FE FE (III) ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM UN1 2-AMINOHEXANEDIOIC ACID HETNAM CYS CYSTEINE HETNAM KCY D-HOMOCYSTEINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FE FE 3+ FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 UN1 C6 H11 N O4 FORMUL 9 CYS C3 H7 N O2 S FORMUL 10 KCY C4 H9 N O2 S FORMUL 11 HOH *429(H2 O) HELIX 1 AA1 SER A 15 GLY A 19 5 5 HELIX 2 AA2 ASP A 21 ASP A 38 1 18 HELIX 3 AA3 ASN A 50 ILE A 65 1 16 HELIX 4 AA4 THR A 66 ALA A 74 1 9 HELIX 5 AA5 HIS A 114 ALA A 119 1 6 HELIX 6 AA6 GLY A 137 LEU A 164 1 28 HELIX 7 AA7 PHE A 171 PHE A 175 5 5 HELIX 8 AA8 PRO A 196 ILE A 200 5 5 HELIX 9 AA9 GLY A 254 THR A 261 1 8 HELIX 10 AB1 SER A 312 GLY A 329 1 18 SHEET 1 AA1 8 LYS A 11 ASP A 13 0 SHEET 2 AA1 8 PHE A 41 VAL A 45 1 O TYR A 43 N ILE A 12 SHEET 3 AA1 8 TYR A 249 CYS A 253 -1 O ILE A 251 N PHE A 42 SHEET 4 AA1 8 ILE A 220 GLN A 225 -1 N LEU A 223 O LEU A 250 SHEET 5 AA1 8 ARG A 279 VAL A 286 -1 O LEU A 282 N TYR A 224 SHEET 6 AA1 8 SER A 183 TYR A 189 -1 N TYR A 189 O ARG A 279 SHEET 7 AA1 8 GLU A 101 TYR A 105 -1 N PHE A 103 O LEU A 186 SHEET 8 AA1 8 GLY A 89 TYR A 91 -1 N TYR A 91 O SER A 102 SHEET 1 AA2 5 LYS A 201 THR A 202 0 SHEET 2 AA2 5 LYS A 208 HIS A 214 -1 O LEU A 209 N LYS A 201 SHEET 3 AA2 5 HIS A 270 LYS A 273 -1 O VAL A 272 N SER A 210 SHEET 4 AA2 5 LEU A 231 THR A 235 -1 N GLN A 232 O ARG A 271 SHEET 5 AA2 5 GLY A 238 ASP A 241 -1 O GLN A 240 N VAL A 233 LINK C1' UN1 A 407 N CYS A 408 1555 1555 1.32 LINK C CYS A 408 N KCY A 409 1555 1555 1.32 LINK NE2 HIS A 214 FE FE A 401 1555 1555 2.19 LINK OD1 ASP A 216 FE FE A 401 1555 1555 2.22 LINK NE2 HIS A 270 FE FE A 401 1555 1555 2.22 LINK FE FE A 401 SG CYS A 408 1555 1555 2.43 LINK FE FE A 401 SD KCY A 409 1555 1555 2.47 LINK FE FE A 401 O HOH A 574 1555 1555 2.11 CISPEP 1 ASP A 193 PRO A 194 0 1.13 CRYST1 46.980 71.420 101.080 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021286 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014002 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009893 0.00000