HEADER ONCOPROTEIN 08-JUL-21 7P3V TITLE B-RAF V600E STRUCTURE BOUND TO A NEW INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE B-RAF; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTO-ONCOGENE B-RAF,P94,V-RAF MURINE SARCOMA VIRAL ONCOGENE COMPND 5 HOMOLOG B1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRAF, BRAF1, RAFB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS INHIBITOR COMPLEX, DRUG DESIGN, DOMAIN SWAPPING, ONCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.SCHNEIDER,M.GELIN,M.COHEN-GONSAUD,G.LABESSE REVDAT 4 31-JAN-24 7P3V 1 REMARK REVDAT 3 09-FEB-22 7P3V 1 JRNL REVDAT 2 02-FEB-22 7P3V 1 JRNL REMARK REVDAT 1 03-NOV-21 7P3V 0 JRNL AUTH M.SCHNEIDER,V.DELFOSSE,M.GELIN,M.GRIMALDI,M.GRANELL, JRNL AUTH 2 L.HERIAUD,J.L.PONS,M.COHEN GONSAUD,P.BALAGUER,W.BOURGUET, JRNL AUTH 3 G.LABESSE JRNL TITL STRUCTURE-BASED AND KNOWLEDGE-INFORMED DESIGN OF B-RAF JRNL TITL 2 INHIBITORS DEVOID OF DELETERIOUS PXR BINDING. JRNL REF J.MED.CHEM. V. 65 1552 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 34958586 JRNL DOI 10.1021/ACS.JMEDCHEM.1C01354 REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 47438 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.960 REMARK 3 FREE R VALUE TEST SET COUNT : 3774 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5500 - 7.1000 1.00 1615 144 0.1822 0.2167 REMARK 3 2 7.1000 - 5.6400 1.00 1616 144 0.2009 0.2405 REMARK 3 3 5.6400 - 4.9300 1.00 1647 124 0.1666 0.1960 REMARK 3 4 4.9300 - 4.4800 1.00 1596 147 0.1513 0.2243 REMARK 3 5 4.4800 - 4.1600 1.00 1632 148 0.1348 0.1773 REMARK 3 6 4.1600 - 3.9100 1.00 1580 139 0.1568 0.2177 REMARK 3 7 3.9100 - 3.7200 1.00 1642 137 0.1634 0.2522 REMARK 3 8 3.7200 - 3.5500 1.00 1612 143 0.1686 0.2310 REMARK 3 9 3.5500 - 3.4200 1.00 1648 131 0.1729 0.2429 REMARK 3 10 3.4200 - 3.3000 1.00 1605 146 0.1776 0.2224 REMARK 3 11 3.3000 - 3.2000 1.00 1632 153 0.1893 0.2398 REMARK 3 12 3.2000 - 3.1100 1.00 1615 128 0.1997 0.2988 REMARK 3 13 3.1100 - 3.0200 1.00 1616 150 0.2237 0.2843 REMARK 3 14 3.0200 - 2.9500 1.00 1640 128 0.2489 0.3011 REMARK 3 15 2.9500 - 2.8800 1.00 1601 150 0.2498 0.2719 REMARK 3 16 2.8800 - 2.8200 1.00 1617 134 0.2420 0.3274 REMARK 3 17 2.8200 - 2.7700 1.00 1601 142 0.2491 0.2915 REMARK 3 18 2.7700 - 2.7100 1.00 1657 135 0.2535 0.3274 REMARK 3 19 2.7100 - 2.6600 1.00 1639 119 0.2699 0.3138 REMARK 3 20 2.6600 - 2.6200 1.00 1596 155 0.2790 0.3387 REMARK 3 21 2.6200 - 2.5800 1.00 1655 147 0.2768 0.3627 REMARK 3 22 2.5800 - 2.5400 1.00 1606 121 0.2851 0.2766 REMARK 3 23 2.5400 - 2.5000 1.00 1579 153 0.2924 0.3256 REMARK 3 24 2.5000 - 2.4600 1.00 1674 133 0.3479 0.3239 REMARK 3 25 2.4600 - 2.4300 1.00 1606 133 0.3711 0.3905 REMARK 3 26 2.4300 - 2.4000 0.99 1573 137 0.3817 0.4322 REMARK 3 27 2.4000 - 2.3700 0.96 1564 153 0.4076 0.4425 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.404 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.446 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4363 REMARK 3 ANGLE : 1.057 5900 REMARK 3 CHIRALITY : 0.055 633 REMARK 3 PLANARITY : 0.008 752 REMARK 3 DIHEDRAL : 8.106 586 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 447 THROUGH 507 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5107 5.2333 -22.4685 REMARK 3 T TENSOR REMARK 3 T11: 0.4839 T22: 0.5769 REMARK 3 T33: 0.3996 T12: 0.0563 REMARK 3 T13: -0.0216 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 6.1021 L22: 4.6755 REMARK 3 L33: 5.4350 L12: 1.6209 REMARK 3 L13: 0.9083 L23: -0.5222 REMARK 3 S TENSOR REMARK 3 S11: -0.0343 S12: 0.8041 S13: 0.0748 REMARK 3 S21: -0.4060 S22: -0.0434 S23: 0.4803 REMARK 3 S31: -0.0067 S32: -0.6932 S33: 0.0978 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 508 THROUGH 587 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.6755 -8.8427 -15.3971 REMARK 3 T TENSOR REMARK 3 T11: 0.4712 T22: 0.4709 REMARK 3 T33: 0.4242 T12: -0.0407 REMARK 3 T13: -0.0527 T23: -0.0659 REMARK 3 L TENSOR REMARK 3 L11: 2.2518 L22: 4.4875 REMARK 3 L33: 4.4306 L12: -0.5148 REMARK 3 L13: 1.1730 L23: 0.5461 REMARK 3 S TENSOR REMARK 3 S11: -0.0139 S12: 0.1006 S13: -0.1480 REMARK 3 S21: 0.4603 S22: 0.2178 S23: -0.3554 REMARK 3 S31: 0.3290 S32: 0.2837 S33: -0.2046 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 588 THROUGH 634 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0367 -15.5268 -29.5288 REMARK 3 T TENSOR REMARK 3 T11: 0.6045 T22: 0.7115 REMARK 3 T33: 0.5648 T12: -0.0343 REMARK 3 T13: -0.0730 T23: 0.0355 REMARK 3 L TENSOR REMARK 3 L11: 2.7765 L22: -0.0262 REMARK 3 L33: 5.5218 L12: 1.0536 REMARK 3 L13: 4.8228 L23: 0.6407 REMARK 3 S TENSOR REMARK 3 S11: 0.2996 S12: -0.0207 S13: -0.1648 REMARK 3 S21: -0.0080 S22: 0.0780 S23: -0.1775 REMARK 3 S31: 0.1187 S32: -0.3285 S33: -0.3438 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 635 THROUGH 721 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9716 -27.1094 -19.4080 REMARK 3 T TENSOR REMARK 3 T11: 0.8203 T22: 0.4477 REMARK 3 T33: 0.6464 T12: 0.0300 REMARK 3 T13: -0.1299 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 3.2397 L22: 4.0259 REMARK 3 L33: 6.7778 L12: 0.4597 REMARK 3 L13: -0.1284 L23: 2.7315 REMARK 3 S TENSOR REMARK 3 S11: 0.2172 S12: -0.2248 S13: -0.4443 REMARK 3 S21: 1.1694 S22: 0.1936 S23: -0.3106 REMARK 3 S31: 1.2388 S32: 0.3964 S33: -0.2707 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 448 THROUGH 507 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6706 5.3641 -48.0933 REMARK 3 T TENSOR REMARK 3 T11: 0.7384 T22: 0.8495 REMARK 3 T33: 0.5225 T12: -0.1143 REMARK 3 T13: -0.0887 T23: -0.0478 REMARK 3 L TENSOR REMARK 3 L11: 1.9574 L22: 4.3577 REMARK 3 L33: 5.2816 L12: -0.7274 REMARK 3 L13: 0.9754 L23: 0.6792 REMARK 3 S TENSOR REMARK 3 S11: -0.1812 S12: -0.3287 S13: 0.1358 REMARK 3 S21: 0.5247 S22: 0.1474 S23: -0.3186 REMARK 3 S31: -0.5919 S32: 0.6498 S33: 0.2046 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 508 THROUGH 592 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3721 -2.9650 -52.8033 REMARK 3 T TENSOR REMARK 3 T11: 0.5085 T22: 0.5353 REMARK 3 T33: 0.3854 T12: 0.0527 REMARK 3 T13: -0.0375 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 3.0134 L22: 3.9878 REMARK 3 L33: 2.8338 L12: 1.3234 REMARK 3 L13: -1.1914 L23: -0.7917 REMARK 3 S TENSOR REMARK 3 S11: 0.1022 S12: -0.3610 S13: 0.2333 REMARK 3 S21: 0.2968 S22: -0.1271 S23: 0.2536 REMARK 3 S31: -0.8217 S32: -0.0494 S33: 0.0246 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 593 THROUGH 634 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1677 -15.6023 -37.9420 REMARK 3 T TENSOR REMARK 3 T11: 0.7097 T22: 0.8966 REMARK 3 T33: 0.7695 T12: 0.0365 REMARK 3 T13: 0.0014 T23: 0.0883 REMARK 3 L TENSOR REMARK 3 L11: 8.0524 L22: 0.8400 REMARK 3 L33: 7.5371 L12: -3.5182 REMARK 3 L13: 9.3866 L23: -3.4397 REMARK 3 S TENSOR REMARK 3 S11: 0.2263 S12: 1.3355 S13: 0.9364 REMARK 3 S21: -0.2545 S22: -0.4914 S23: -0.0023 REMARK 3 S31: 0.1988 S32: 0.8181 S33: 0.1752 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 635 THROUGH 719 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0822 -19.2845 -47.5244 REMARK 3 T TENSOR REMARK 3 T11: 0.3460 T22: 0.5459 REMARK 3 T33: 0.4941 T12: -0.0184 REMARK 3 T13: -0.0036 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 5.2350 L22: 5.9206 REMARK 3 L33: 7.8927 L12: 0.1091 REMARK 3 L13: -1.0434 L23: -2.6387 REMARK 3 S TENSOR REMARK 3 S11: 0.0679 S12: -0.2544 S13: -0.4315 REMARK 3 S21: -0.1041 S22: 0.1246 S23: 0.2408 REMARK 3 S31: 0.1204 S32: -0.5002 S33: -0.0351 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7P3V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1292116945. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47486 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370 REMARK 200 RESOLUTION RANGE LOW (A) : 48.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.720 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4XV2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BISTRISPROPANE, 20% PEG 3350, REMARK 280 AND 250 MM NA-FORMATE, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.31600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.77850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.42700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.77850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.31600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.42700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 598 REMARK 465 THR A 599 REMARK 465 GLU A 600 REMARK 465 LYS A 601 REMARK 465 SER A 602 REMARK 465 ARG A 603 REMARK 465 TRP A 604 REMARK 465 SER A 605 REMARK 465 GLY A 606 REMARK 465 SER A 607 REMARK 465 HIS A 608 REMARK 465 GLN A 609 REMARK 465 PHE A 610 REMARK 465 GLU A 611 REMARK 465 GLN A 612 REMARK 465 LEU A 613 REMARK 465 SER A 614 REMARK 465 PHE B 447 REMARK 465 GLU B 720 REMARK 465 ALA B 721 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 499 CG CD CE NZ REMARK 470 LYS A 551 CG CD CE NZ REMARK 470 ARG A 662 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 709 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 448 CG OD1 OD2 REMARK 470 LYS B 499 CG CD CE NZ REMARK 470 LYS B 522 CG CD CE NZ REMARK 470 GLU B 545 CG CD OE1 OE2 REMARK 470 LYS B 551 CG CD CE NZ REMARK 470 GLN B 612 CG CD OE1 NE2 REMARK 470 ARG B 662 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 671 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 535 O HOH A 901 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 715 NZ LYS B 475 2555 2.12 REMARK 500 NZ LYS A 507 OD2 ASP B 449 2555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 465 -132.90 -109.17 REMARK 500 TRP A 476 105.11 -160.70 REMARK 500 ALA A 489 73.68 58.33 REMARK 500 PHE A 548 102.68 -51.95 REMARK 500 ARG A 575 -4.80 84.86 REMARK 500 ASP A 576 42.25 -158.37 REMARK 500 ASN A 588 -39.00 -130.84 REMARK 500 SER A 630 -93.30 -99.51 REMARK 500 ASN A 631 102.60 60.69 REMARK 500 ASN A 661 101.86 -165.78 REMARK 500 SER B 465 -156.92 -124.06 REMARK 500 ASN B 486 29.66 -78.07 REMARK 500 ARG B 509 89.39 -154.81 REMARK 500 LYS B 522 -70.32 -71.08 REMARK 500 ARG B 575 -8.37 81.58 REMARK 500 ASP B 576 40.78 -152.04 REMARK 500 GLU B 586 17.00 52.59 REMARK 500 SER B 630 -83.12 -127.89 REMARK 500 ASN B 631 89.40 58.62 REMARK 500 TYR B 656 19.51 59.29 REMARK 500 SER B 657 81.03 -63.29 REMARK 500 ASN B 658 -1.48 162.40 REMARK 500 ASN B 660 34.84 -88.43 REMARK 500 REMARK 500 REMARK: NULL DBREF 7P3V A 448 719 UNP P15056 BRAF_HUMAN 448 719 DBREF 7P3V B 448 719 UNP P15056 BRAF_HUMAN 448 719 SEQADV 7P3V PHE A 447 UNP P15056 EXPRESSION TAG SEQADV 7P3V ALA A 543 UNP P15056 ILE 543 CONFLICT SEQADV 7P3V SER A 544 UNP P15056 ILE 544 CONFLICT SEQADV 7P3V LYS A 551 UNP P15056 ILE 551 CONFLICT SEQADV 7P3V ARG A 562 UNP P15056 GLN 562 CONFLICT SEQADV 7P3V ASN A 588 UNP P15056 LEU 588 CONFLICT SEQADV 7P3V GLU A 600 UNP P15056 VAL 600 ENGINEERED MUTATION SEQADV 7P3V SER A 630 UNP P15056 LYS 630 CONFLICT SEQADV 7P3V GLU A 667 UNP P15056 PHE 667 CONFLICT SEQADV 7P3V SER A 673 UNP P15056 TYR 673 CONFLICT SEQADV 7P3V ARG A 688 UNP P15056 ALA 688 CONFLICT SEQADV 7P3V SER A 706 UNP P15056 LEU 706 CONFLICT SEQADV 7P3V ARG A 709 UNP P15056 GLN 709 CONFLICT SEQADV 7P3V GLU A 713 UNP P15056 SER 713 CONFLICT SEQADV 7P3V GLU A 716 UNP P15056 LEU 716 CONFLICT SEQADV 7P3V GLU A 720 UNP P15056 EXPRESSION TAG SEQADV 7P3V ALA A 721 UNP P15056 EXPRESSION TAG SEQADV 7P3V PHE B 447 UNP P15056 EXPRESSION TAG SEQADV 7P3V ALA B 543 UNP P15056 ILE 543 CONFLICT SEQADV 7P3V SER B 544 UNP P15056 ILE 544 CONFLICT SEQADV 7P3V LYS B 551 UNP P15056 ILE 551 CONFLICT SEQADV 7P3V ARG B 562 UNP P15056 GLN 562 CONFLICT SEQADV 7P3V ASN B 588 UNP P15056 LEU 588 CONFLICT SEQADV 7P3V GLU B 600 UNP P15056 VAL 600 ENGINEERED MUTATION SEQADV 7P3V SER B 630 UNP P15056 LYS 630 CONFLICT SEQADV 7P3V GLU B 667 UNP P15056 PHE 667 CONFLICT SEQADV 7P3V SER B 673 UNP P15056 TYR 673 CONFLICT SEQADV 7P3V ARG B 688 UNP P15056 ALA 688 CONFLICT SEQADV 7P3V SER B 706 UNP P15056 LEU 706 CONFLICT SEQADV 7P3V ARG B 709 UNP P15056 GLN 709 CONFLICT SEQADV 7P3V GLU B 713 UNP P15056 SER 713 CONFLICT SEQADV 7P3V GLU B 716 UNP P15056 LEU 716 CONFLICT SEQADV 7P3V GLU B 720 UNP P15056 EXPRESSION TAG SEQADV 7P3V ALA B 721 UNP P15056 EXPRESSION TAG SEQRES 1 A 275 PHE ASP ASP TRP GLU ILE PRO ASP GLY GLN ILE THR VAL SEQRES 2 A 275 GLY GLN ARG ILE GLY SER GLY SER PHE GLY THR VAL TYR SEQRES 3 A 275 LYS GLY LYS TRP HIS GLY ASP VAL ALA VAL LYS MET LEU SEQRES 4 A 275 ASN VAL THR ALA PRO THR PRO GLN GLN LEU GLN ALA PHE SEQRES 5 A 275 LYS ASN GLU VAL GLY VAL LEU ARG LYS THR ARG HIS VAL SEQRES 6 A 275 ASN ILE LEU LEU PHE MET GLY TYR SER THR LYS PRO GLN SEQRES 7 A 275 LEU ALA ILE VAL THR GLN TRP CYS GLU GLY SER SER LEU SEQRES 8 A 275 TYR HIS HIS LEU HIS ALA SER GLU THR LYS PHE GLU MET SEQRES 9 A 275 LYS LYS LEU ILE ASP ILE ALA ARG GLN THR ALA ARG GLY SEQRES 10 A 275 MET ASP TYR LEU HIS ALA LYS SER ILE ILE HIS ARG ASP SEQRES 11 A 275 LEU LYS SER ASN ASN ILE PHE LEU HIS GLU ASP ASN THR SEQRES 12 A 275 VAL LYS ILE GLY ASP PHE GLY LEU ALA THR GLU LYS SER SEQRES 13 A 275 ARG TRP SER GLY SER HIS GLN PHE GLU GLN LEU SER GLY SEQRES 14 A 275 SER ILE LEU TRP MET ALA PRO GLU VAL ILE ARG MET GLN SEQRES 15 A 275 ASP SER ASN PRO TYR SER PHE GLN SER ASP VAL TYR ALA SEQRES 16 A 275 PHE GLY ILE VAL LEU TYR GLU LEU MET THR GLY GLN LEU SEQRES 17 A 275 PRO TYR SER ASN ILE ASN ASN ARG ASP GLN ILE ILE GLU SEQRES 18 A 275 MET VAL GLY ARG GLY SER LEU SER PRO ASP LEU SER LYS SEQRES 19 A 275 VAL ARG SER ASN CYS PRO LYS ARG MET LYS ARG LEU MET SEQRES 20 A 275 ALA GLU CYS LEU LYS LYS LYS ARG ASP GLU ARG PRO SER SEQRES 21 A 275 PHE PRO ARG ILE LEU ALA GLU ILE GLU GLU LEU ALA ARG SEQRES 22 A 275 GLU ALA SEQRES 1 B 275 PHE ASP ASP TRP GLU ILE PRO ASP GLY GLN ILE THR VAL SEQRES 2 B 275 GLY GLN ARG ILE GLY SER GLY SER PHE GLY THR VAL TYR SEQRES 3 B 275 LYS GLY LYS TRP HIS GLY ASP VAL ALA VAL LYS MET LEU SEQRES 4 B 275 ASN VAL THR ALA PRO THR PRO GLN GLN LEU GLN ALA PHE SEQRES 5 B 275 LYS ASN GLU VAL GLY VAL LEU ARG LYS THR ARG HIS VAL SEQRES 6 B 275 ASN ILE LEU LEU PHE MET GLY TYR SER THR LYS PRO GLN SEQRES 7 B 275 LEU ALA ILE VAL THR GLN TRP CYS GLU GLY SER SER LEU SEQRES 8 B 275 TYR HIS HIS LEU HIS ALA SER GLU THR LYS PHE GLU MET SEQRES 9 B 275 LYS LYS LEU ILE ASP ILE ALA ARG GLN THR ALA ARG GLY SEQRES 10 B 275 MET ASP TYR LEU HIS ALA LYS SER ILE ILE HIS ARG ASP SEQRES 11 B 275 LEU LYS SER ASN ASN ILE PHE LEU HIS GLU ASP ASN THR SEQRES 12 B 275 VAL LYS ILE GLY ASP PHE GLY LEU ALA THR GLU LYS SER SEQRES 13 B 275 ARG TRP SER GLY SER HIS GLN PHE GLU GLN LEU SER GLY SEQRES 14 B 275 SER ILE LEU TRP MET ALA PRO GLU VAL ILE ARG MET GLN SEQRES 15 B 275 ASP SER ASN PRO TYR SER PHE GLN SER ASP VAL TYR ALA SEQRES 16 B 275 PHE GLY ILE VAL LEU TYR GLU LEU MET THR GLY GLN LEU SEQRES 17 B 275 PRO TYR SER ASN ILE ASN ASN ARG ASP GLN ILE ILE GLU SEQRES 18 B 275 MET VAL GLY ARG GLY SER LEU SER PRO ASP LEU SER LYS SEQRES 19 B 275 VAL ARG SER ASN CYS PRO LYS ARG MET LYS ARG LEU MET SEQRES 20 B 275 ALA GLU CYS LEU LYS LYS LYS ARG ASP GLU ARG PRO SER SEQRES 21 B 275 PHE PRO ARG ILE LEU ALA GLU ILE GLU GLU LEU ALA ARG SEQRES 22 B 275 GLU ALA HET 5I4 A 801 56 HET 5I4 B 801 56 HETNAM 5I4 ~{N}-[3-[5-(2-AZANYLPYRIMIDIN-4-YL)-2-[(3~{S})- HETNAM 2 5I4 MORPHOLIN-3-YL]-1,3-THIAZOL-4-YL]-2-FLUORANYL-PHENYL]- HETNAM 3 5I4 2,5-BIS(FLUORANYL)BENZENESULFONAMIDE FORMUL 3 5I4 2(C23 H19 F3 N6 O3 S2) FORMUL 5 HOH *125(H2 O) HELIX 1 AA1 PHE A 447 GLU A 451 5 5 HELIX 2 AA2 THR A 491 ARG A 506 1 16 HELIX 3 AA3 SER A 536 ALA A 543 1 8 HELIX 4 AA4 GLU A 549 LYS A 570 1 22 HELIX 5 AA5 LYS A 578 ASN A 580 5 3 HELIX 6 AA6 GLU A 586 ASN A 588 5 3 HELIX 7 AA7 SER A 616 MET A 620 5 5 HELIX 8 AA8 ALA A 621 GLN A 628 1 8 HELIX 9 AA9 SER A 634 GLY A 652 1 19 HELIX 10 AB1 ASN A 661 ARG A 671 1 11 HELIX 11 AB2 ASP A 677 VAL A 681 5 5 HELIX 12 AB3 PRO A 686 LEU A 697 1 12 HELIX 13 AB4 LYS A 700 ARG A 704 5 5 HELIX 14 AB5 SER A 706 GLU A 720 1 15 HELIX 15 AB6 THR B 491 ARG B 506 1 16 HELIX 16 AB7 SER B 536 ALA B 543 1 8 HELIX 17 AB8 GLU B 549 LYS B 570 1 22 HELIX 18 AB9 LYS B 578 ASN B 580 5 3 HELIX 19 AC1 GLU B 586 ASN B 588 5 3 HELIX 20 AC2 ARG B 603 LEU B 613 1 11 HELIX 21 AC3 SER B 614 MET B 620 5 7 HELIX 22 AC4 ALA B 621 ASP B 629 1 9 HELIX 23 AC5 SER B 634 GLY B 652 1 19 HELIX 24 AC6 ASN B 661 GLY B 672 1 12 HELIX 25 AC7 ASP B 677 VAL B 681 5 5 HELIX 26 AC8 PRO B 686 LEU B 697 1 12 HELIX 27 AC9 LYS B 700 ARG B 704 5 5 HELIX 28 AD1 SER B 706 ARG B 719 1 14 SHEET 1 AA1 5 THR A 458 GLY A 464 0 SHEET 2 AA1 5 GLY A 469 LYS A 475 -1 O LYS A 473 N GLY A 460 SHEET 3 AA1 5 ASP A 479 LEU A 485 -1 O MET A 484 N THR A 470 SHEET 4 AA1 5 ALA A 526 GLN A 530 -1 O ILE A 527 N LYS A 483 SHEET 5 AA1 5 PHE A 516 SER A 520 -1 N MET A 517 O VAL A 528 SHEET 1 AA2 2 ILE A 582 HIS A 585 0 SHEET 2 AA2 2 THR A 589 ILE A 592 -1 O LYS A 591 N PHE A 583 SHEET 1 AA3 5 THR B 458 GLY B 464 0 SHEET 2 AA3 5 GLY B 469 LYS B 475 -1 O VAL B 471 N GLY B 464 SHEET 3 AA3 5 ASP B 479 LEU B 485 -1 O MET B 484 N THR B 470 SHEET 4 AA3 5 LEU B 525 GLN B 530 -1 O LEU B 525 N LEU B 485 SHEET 5 AA3 5 PHE B 516 SER B 520 -1 N GLY B 518 O VAL B 528 SHEET 1 AA4 2 ILE B 582 HIS B 585 0 SHEET 2 AA4 2 THR B 589 ILE B 592 -1 O LYS B 591 N PHE B 583 CISPEP 1 LYS A 522 PRO A 523 0 6.69 CRYST1 52.632 104.854 109.557 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019000 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009537 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009128 0.00000 MTRIX1 1 -0.863872 0.467176 -0.188340 22.91035 1 MTRIX2 1 0.473121 0.880872 0.014900 -8.00947 1 MTRIX3 1 0.172864 -0.076236 -0.981991 -73.12069 1