HEADER DNA BINDING PROTEIN 10-JUL-21 7P4A TITLE NON-CANONICAL STAPHYLOCOCCUS AUREUS PATHOGENICITY ISLAND REPRESSION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: STL; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SRI; COMPND 7 CHAIN: E, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PPROEX-HTA; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 10 ORGANISM_TAXID: 1280; SOURCE 11 GENE: E4U00_01835, G6X37_04850, G6Y24_00280, GO782_16265, SOURCE 12 GO810_08430, SAMEA103891454_02805; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PPROEX-HTA KEYWDS MOBILE GENETIC ELEMENT, REPRESSOR, SAPI, HTH DOMAIN, DNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.MIGUEL-ROMERO,M.ALQASMI,J.BACARIZO,J.A.TAN,R.J.COGDELL,J.CHEN, AUTHOR 2 O.BYRON,G.E.CHRISTIE,A.MARINA,J.R.PENADES REVDAT 3 16-NOV-22 7P4A 1 JRNL REVDAT 2 19-OCT-22 7P4A 1 JRNL REVDAT 1 27-JUL-22 7P4A 0 JRNL AUTH L.MIGUEL-ROMERO,M.ALQASMI,J.BACARIZO,J.A.TAN,R.J.COGDELL, JRNL AUTH 2 J.CHEN,O.BYRON,G.E.CHRISTIE,A.MARINA,J.R.PENADES JRNL TITL NON-CANONICAL STAPHYLOCOCCUS AUREUS PATHOGENICITY ISLAND JRNL TITL 2 REPRESSION. JRNL REF NUCLEIC ACIDS RES. V. 50 11109 2022 JRNL REFN ESSN 1362-4962 JRNL PMID 36200825 JRNL DOI 10.1093/NAR/GKAC855 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 83.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 20482 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.299 REMARK 3 FREE R VALUE : 0.343 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.190 REMARK 3 FREE R VALUE TEST SET COUNT : 1063 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1384 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.3700 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.3920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4204 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 94.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.69200 REMARK 3 B22 (A**2) : 2.69200 REMARK 3 B33 (A**2) : -8.73200 REMARK 3 B12 (A**2) : 1.34600 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.130 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.472 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.467 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.585 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.889 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.867 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4277 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3993 ; 0.003 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5758 ; 1.321 ; 1.650 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9192 ; 1.199 ; 1.595 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 511 ; 6.061 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 216 ;35.665 ;25.046 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 764 ;14.708 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;10.081 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 579 ; 0.046 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4779 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 975 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 953 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 65 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2050 ; 0.170 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 83 ; 0.123 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2074 ; 7.758 ;10.365 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2073 ; 7.758 ;10.361 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2575 ;12.003 ;15.518 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2576 ;12.000 ;15.523 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2203 ; 6.852 ;10.501 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2201 ; 6.853 ;10.492 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3183 ;11.059 ;15.571 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3183 ;11.060 ;15.571 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7P4A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1292116790. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97936 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20492 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 86.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.04900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4M AMMONIUM PHOSPHATE, 25% PEG200, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 99.56267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 199.12533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 149.34400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 248.90667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.78133 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 99.56267 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 199.12533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 248.90667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 149.34400 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 49.78133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, B, D REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -50.10550 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 86.78527 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 49.78133 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 244 REMARK 465 MSE E 1 REMARK 465 VAL E 2 REMARK 465 TYR E 52 REMARK 465 MSE B -2 REMARK 465 ILE B -1 REMARK 465 TYR B 0 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 PHE B 3 REMARK 465 GLY B 4 REMARK 465 GLU B 5 REMARK 465 SER B 33 REMARK 465 LYS B 34 REMARK 465 LEU B 35 REMARK 465 GLU B 36 REMARK 465 ASN B 37 REMARK 465 GLY B 38 REMARK 465 LYS B 39 REMARK 465 ARG B 40 REMARK 465 ASN B 41 REMARK 465 PHE B 42 REMARK 465 PRO B 43 REMARK 465 SER B 44 REMARK 465 LEU B 45 REMARK 465 GLU B 46 REMARK 465 MSE B 63 REMARK 465 GLY B 64 REMARK 465 SER B 65 REMARK 465 PHE B 84 REMARK 465 ILE B 85 REMARK 465 ASN B 86 REMARK 465 SER B 87 REMARK 465 SER B 90 REMARK 465 THR B 91 REMARK 465 ILE B 92 REMARK 465 SER B 93 REMARK 465 ASP B 94 REMARK 465 ARG B 95 REMARK 465 ASP B 96 REMARK 465 TYR B 241 REMARK 465 GLU B 242 REMARK 465 THR B 243 REMARK 465 ASP B 244 REMARK 465 MSE D 1 REMARK 465 VAL D 2 REMARK 465 THR D 3 REMARK 465 GLU D 12 REMARK 465 CYS D 13 REMARK 465 SER D 14 REMARK 465 LEU D 21 REMARK 465 ILE D 22 REMARK 465 ASP D 23 REMARK 465 GLU D 24 REMARK 465 ALA D 25 REMARK 465 GLN D 26 REMARK 465 GLY D 27 REMARK 465 ASP D 28 REMARK 465 GLU D 29 REMARK 465 ASN D 30 REMARK 465 LYS D 31 REMARK 465 LEU D 32 REMARK 465 TYR D 33 REMARK 465 ASP D 34 REMARK 465 LEU D 35 REMARK 465 PHE D 36 REMARK 465 ILE D 37 REMARK 465 ARG D 43 REMARK 465 HIS D 44 REMARK 465 THR D 45 REMARK 465 ARG D 46 REMARK 465 PRO D 47 REMARK 465 ALA D 48 REMARK 465 ILE D 49 REMARK 465 VAL D 50 REMARK 465 GLU D 51 REMARK 465 TYR D 52 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 19 CG CD CE NZ REMARK 470 SER A 93 OG REMARK 470 PHE A 167 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 168 CG CD1 CD2 REMARK 470 ASP A 170 CG OD1 OD2 REMARK 470 ASN A 171 CG OD1 ND2 REMARK 470 HIS A 178 CG ND1 CD2 CE1 NE2 REMARK 470 THR A 180 OG1 CG2 REMARK 470 GLU A 181 CG CD OE1 OE2 REMARK 470 TYR A 185 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 LYS B 15 CG CD CE NZ REMARK 470 LEU B 16 CG CD1 CD2 REMARK 470 VAL B 18 CG1 CG2 REMARK 470 LEU B 21 CG CD1 CD2 REMARK 470 VAL B 27 CG1 CG2 REMARK 470 ILE B 48 CG1 CG2 CD1 REMARK 470 ASN B 50 CG OD1 ND2 REMARK 470 LEU B 51 CG CD1 CD2 REMARK 470 ILE B 53 CG1 CG2 CD1 REMARK 470 PHE B 55 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 60 CG CD OE1 OE2 REMARK 470 GLU B 66 CG CD OE1 OE2 REMARK 470 SER B 67 OG REMARK 470 TYR B 70 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR B 76 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU B 77 CG CD1 CD2 REMARK 470 ILE B 80 CG1 CG2 CD1 REMARK 470 LEU B 81 CG CD1 CD2 REMARK 470 ILE B 82 CG1 CG2 CD1 REMARK 470 MSE B 83 CG SE CE REMARK 470 SER B 88 OG REMARK 470 ASN B 89 CG OD1 ND2 REMARK 470 LEU B 100 CG CD1 CD2 REMARK 470 ASN B 117 CG OD1 ND2 REMARK 470 GLU B 118 CG CD OE1 OE2 REMARK 470 LYS B 121 CG CD CE NZ REMARK 470 ILE B 122 CG1 CG2 CD1 REMARK 470 ILE B 126 CG1 CG2 CD1 REMARK 470 LYS B 135 CG CD CE NZ REMARK 470 ASP B 170 CG OD1 OD2 REMARK 470 ILE B 222 CG1 CG2 CD1 REMARK 470 THR B 224 OG1 CG2 REMARK 470 ASN B 225 CG OD1 ND2 REMARK 470 GLU B 227 CG CD OE1 OE2 REMARK 470 ARG B 233 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 10 CG CD CE NZ REMARK 470 LEU D 11 CG CD1 CD2 REMARK 470 ASP D 15 CG OD1 OD2 REMARK 470 MSE D 16 CG SE CE REMARK 470 TYR D 17 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN D 19 CG CD OE1 NE2 REMARK 470 LYS D 20 CG CD CE NZ REMARK 470 GLN D 38 CG CD OE1 NE2 REMARK 470 LYS D 39 CG CD CE NZ REMARK 470 LEU D 40 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 42 133.94 -25.56 REMARK 500 THR A 57 33.42 -87.94 REMARK 500 HIS A 58 -40.12 -141.19 REMARK 500 LYS A 62 -61.97 -94.10 REMARK 500 ASN A 86 30.21 -94.57 REMARK 500 ARG A 95 54.04 -97.97 REMARK 500 PHE A 148 51.53 -102.62 REMARK 500 ASP A 164 135.33 -35.45 REMARK 500 ARG A 165 62.46 -69.88 REMARK 500 SER A 166 -64.46 -147.74 REMARK 500 PHE A 167 45.99 -91.35 REMARK 500 LEU A 168 65.87 -113.05 REMARK 500 LEU A 174 34.56 -88.44 REMARK 500 TYR A 186 77.69 -111.33 REMARK 500 VAL A 189 139.01 -36.69 REMARK 500 ASP A 228 116.31 -33.17 REMARK 500 GLU A 242 84.50 62.41 REMARK 500 ASP E 28 92.20 -65.05 REMARK 500 ARG E 43 99.15 -64.06 REMARK 500 LEU B 7 -145.44 54.67 REMARK 500 LYS B 15 73.74 60.04 REMARK 500 LEU B 24 -70.45 -57.30 REMARK 500 VAL B 27 -65.24 66.28 REMARK 500 PHE B 55 8.76 -155.25 REMARK 500 PHE B 69 -71.85 -78.27 REMARK 500 GLN B 103 -53.96 -127.52 REMARK 500 ILE B 122 20.31 -143.53 REMARK 500 ASN B 129 30.24 83.05 REMARK 500 GLU B 141 110.10 -168.50 REMARK 500 PRO B 146 62.61 -69.32 REMARK 500 THR B 155 58.12 -108.18 REMARK 500 LEU B 169 47.43 -100.65 REMARK 500 ASN B 171 -49.34 72.61 REMARK 500 LYS B 209 -70.69 -68.63 REMARK 500 MSE D 16 -73.69 -132.34 REMARK 500 REMARK 500 REMARK: NULL DBREF 7P4A A -2 244 UNP O54475 O54475_STAAU 1 247 DBREF1 7P4A E 1 52 UNP A0A659I9D5_STAAU DBREF2 7P4A E A0A659I9D5 1 52 DBREF 7P4A B -2 244 UNP O54475 O54475_STAAU 1 247 DBREF1 7P4A D 1 52 UNP A0A659I9D5_STAAU DBREF2 7P4A D A0A659I9D5 1 52 SEQRES 1 A 247 MSE ILE TYR MSE THR PHE GLY GLU ILE LEU LYS LYS GLU SEQRES 2 A 247 ARG VAL SER TRP LYS LEU SER VAL LYS GLU LEU SER THR SEQRES 3 A 247 LEU SER GLY VAL SER GLN THR TYR ILE SER LYS LEU GLU SEQRES 4 A 247 ASN GLY LYS ARG ASN PHE PRO SER LEU GLU THR ILE PHE SEQRES 5 A 247 ASN LEU LEU ILE GLY PHE LYS THR HIS ILE GLU TYR LYS SEQRES 6 A 247 MSE GLY SER GLU SER PRO PHE TYR GLU ILE ASN ASN SER SEQRES 7 A 247 TYR LEU ASP GLU ILE LEU ILE MSE PHE ILE ASN SER SER SEQRES 8 A 247 ASN SER THR ILE SER ASP ARG ASP PRO ASN GLU LEU ILE SEQRES 9 A 247 THR GLN PHE ASN GLU TYR TYR ASP VAL THR ILE LYS LYS SEQRES 10 A 247 LYS GLN ASN GLU ASN SER LYS ILE GLU SER ASP ILE PHE SEQRES 11 A 247 SER ASN LYS ILE LYS LEU VAL LYS GLY THR THR LYS LYS SEQRES 12 A 247 GLU VAL ILE GLU LYS PRO TYR PHE ASP LEU ASN TRP LEU SEQRES 13 A 247 LEU THR GLN ASN GLU TYR GLU VAL PHE PHE ASP ARG SER SEQRES 14 A 247 PHE LEU LEU ASP ASN ASN PHE LEU ASN LYS LYS HIS PHE SEQRES 15 A 247 THR GLU LYS ASP MSE TYR TYR TYR ASN VAL LEU ASN ASP SEQRES 16 A 247 ASN ASP LEU LYS THR ILE LYS ASP LEU ILE VAL VAL PHE SEQRES 17 A 247 LEU LEU ASN LYS TYR ASN TYR ILE LYS ASN LYS ASP ASP SEQRES 18 A 247 PHE PHE ASN ILE PHE THR ASN SER GLU ASP ASP LYS THR SEQRES 19 A 247 LYS ARG ASP ALA LEU TYR LYS ILE LEU TYR GLU THR ASP SEQRES 1 E 52 MSE VAL THR LYS GLU PHE LEU LYS ILE LYS LEU GLU CYS SEQRES 2 E 52 SER ASP MSE TYR ALA GLN LYS LEU ILE ASP GLU ALA GLN SEQRES 3 E 52 GLY ASP GLU ASN LYS LEU TYR ASP LEU PHE ILE GLN LYS SEQRES 4 E 52 LEU ALA GLU ARG HIS THR ARG PRO ALA ILE VAL GLU TYR SEQRES 1 B 247 MSE ILE TYR MSE THR PHE GLY GLU ILE LEU LYS LYS GLU SEQRES 2 B 247 ARG VAL SER TRP LYS LEU SER VAL LYS GLU LEU SER THR SEQRES 3 B 247 LEU SER GLY VAL SER GLN THR TYR ILE SER LYS LEU GLU SEQRES 4 B 247 ASN GLY LYS ARG ASN PHE PRO SER LEU GLU THR ILE PHE SEQRES 5 B 247 ASN LEU LEU ILE GLY PHE LYS THR HIS ILE GLU TYR LYS SEQRES 6 B 247 MSE GLY SER GLU SER PRO PHE TYR GLU ILE ASN ASN SER SEQRES 7 B 247 TYR LEU ASP GLU ILE LEU ILE MSE PHE ILE ASN SER SER SEQRES 8 B 247 ASN SER THR ILE SER ASP ARG ASP PRO ASN GLU LEU ILE SEQRES 9 B 247 THR GLN PHE ASN GLU TYR TYR ASP VAL THR ILE LYS LYS SEQRES 10 B 247 LYS GLN ASN GLU ASN SER LYS ILE GLU SER ASP ILE PHE SEQRES 11 B 247 SER ASN LYS ILE LYS LEU VAL LYS GLY THR THR LYS LYS SEQRES 12 B 247 GLU VAL ILE GLU LYS PRO TYR PHE ASP LEU ASN TRP LEU SEQRES 13 B 247 LEU THR GLN ASN GLU TYR GLU VAL PHE PHE ASP ARG SER SEQRES 14 B 247 PHE LEU LEU ASP ASN ASN PHE LEU ASN LYS LYS HIS PHE SEQRES 15 B 247 THR GLU LYS ASP MSE TYR TYR TYR ASN VAL LEU ASN ASP SEQRES 16 B 247 ASN ASP LEU LYS THR ILE LYS ASP LEU ILE VAL VAL PHE SEQRES 17 B 247 LEU LEU ASN LYS TYR ASN TYR ILE LYS ASN LYS ASP ASP SEQRES 18 B 247 PHE PHE ASN ILE PHE THR ASN SER GLU ASP ASP LYS THR SEQRES 19 B 247 LYS ARG ASP ALA LEU TYR LYS ILE LEU TYR GLU THR ASP SEQRES 1 D 52 MSE VAL THR LYS GLU PHE LEU LYS ILE LYS LEU GLU CYS SEQRES 2 D 52 SER ASP MSE TYR ALA GLN LYS LEU ILE ASP GLU ALA GLN SEQRES 3 D 52 GLY ASP GLU ASN LYS LEU TYR ASP LEU PHE ILE GLN LYS SEQRES 4 D 52 LEU ALA GLU ARG HIS THR ARG PRO ALA ILE VAL GLU TYR MODRES 7P4A MSE A -2 MET MODIFIED RESIDUE MODRES 7P4A MSE A 1 MET MODIFIED RESIDUE MODRES 7P4A MSE A 63 MET MODIFIED RESIDUE MODRES 7P4A MSE A 83 MET MODIFIED RESIDUE MODRES 7P4A MSE A 184 MET MODIFIED RESIDUE MODRES 7P4A MSE E 16 MET MODIFIED RESIDUE MODRES 7P4A MSE B 83 MET MODIFIED RESIDUE MODRES 7P4A MSE B 184 MET MODIFIED RESIDUE MODRES 7P4A MSE D 16 MET MODIFIED RESIDUE HET MSE A -2 19 HET MSE A 1 17 HET MSE A 63 17 HET MSE A 83 17 HET MSE A 184 17 HET MSE E 16 17 HET MSE B 83 9 HET MSE B 184 17 HET MSE D 16 9 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 5 HOH *8(H2 O) HELIX 1 AA1 THR A 2 TRP A 14 1 13 HELIX 2 AA2 SER A 17 SER A 25 1 9 HELIX 3 AA3 SER A 28 GLY A 38 1 11 HELIX 4 AA4 SER A 44 GLY A 64 1 21 HELIX 5 AA5 GLU A 66 ASN A 86 1 21 HELIX 6 AA6 ASP A 96 SER A 120 1 25 HELIX 7 AA7 ILE A 122 SER A 128 1 7 HELIX 8 AA8 ASP A 149 GLN A 156 1 8 HELIX 9 AA9 ASN A 191 TYR A 210 1 20 HELIX 10 AB1 ASN A 215 ASN A 225 1 11 HELIX 11 AB2 ASP A 228 GLU A 242 1 15 HELIX 12 AB3 LYS E 4 GLU E 12 1 9 HELIX 13 AB4 SER E 14 GLU E 24 1 11 HELIX 14 AB5 ASP E 28 ARG E 43 1 16 HELIX 15 AB6 ARG B 11 LYS B 15 5 5 HELIX 16 AB7 GLU B 20 SER B 25 1 6 HELIX 17 AB8 ILE B 48 LEU B 52 1 5 HELIX 18 AB9 PHE B 55 LYS B 62 1 8 HELIX 19 AC1 PHE B 69 MSE B 83 1 15 HELIX 20 AC2 GLN B 103 SER B 120 1 18 HELIX 21 AC3 ILE B 122 ASN B 129 1 8 HELIX 22 AC4 ASP B 149 THR B 155 1 7 HELIX 23 AC5 ASN B 172 LYS B 176 5 5 HELIX 24 AC6 THR B 180 TYR B 186 1 7 HELIX 25 AC7 ASN B 191 TYR B 210 1 20 HELIX 26 AC8 ASN B 215 ILE B 222 1 8 HELIX 27 AC9 ASP B 228 LEU B 240 1 13 SHEET 1 AA1 2 ILE A 131 LEU A 133 0 SHEET 2 AA1 2 LYS A 140 VAL A 142 -1 O GLU A 141 N LYS A 132 SHEET 1 AA2 2 ASN A 211 TYR A 212 0 SHEET 2 AA2 2 PHE B 167 LEU B 168 -1 O LEU B 168 N ASN A 211 SHEET 1 AA3 2 VAL B 161 PHE B 162 0 SHEET 2 AA3 2 VAL B 189 LEU B 190 -1 O LEU B 190 N VAL B 161 LINK C MSE A -2 N ILE A -1 1555 1555 1.34 LINK C TYR A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N THR A 2 1555 1555 1.34 LINK C LYS A 62 N MSE A 63 1555 1555 1.33 LINK C MSE A 63 N GLY A 64 1555 1555 1.33 LINK C ILE A 82 N MSE A 83 1555 1555 1.34 LINK C MSE A 83 N PHE A 84 1555 1555 1.34 LINK C ASP A 183 N MSE A 184 1555 1555 1.34 LINK C MSE A 184 N TYR A 185 1555 1555 1.34 LINK C ASP E 15 N MSE E 16 1555 1555 1.34 LINK C MSE E 16 N TYR E 17 1555 1555 1.34 LINK C ILE B 82 N MSE B 83 1555 1555 1.35 LINK C ASP B 183 N MSE B 184 1555 1555 1.34 LINK C MSE B 184 N TYR B 185 1555 1555 1.34 LINK C ASP D 15 N MSE D 16 1555 1555 1.34 LINK C MSE D 16 N TYR D 17 1555 1555 1.34 CRYST1 100.211 100.211 298.688 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009979 0.005761 0.000000 0.00000 SCALE2 0.000000 0.011523 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003348 0.00000 HETATM 1 N MSE A -2 81.215 87.360 64.826 1.00106.31 N0 HETATM 2 CA MSE A -2 79.773 87.127 64.520 1.00100.61 C0 HETATM 3 C MSE A -2 79.513 85.631 64.412 1.00 91.75 C0 HETATM 4 O MSE A -2 80.451 84.839 64.375 1.00100.33 O0 HETATM 5 CB MSE A -2 79.365 87.850 63.233 1.00109.09 C0 HETATM 6 CG MSE A -2 78.983 89.298 63.462 1.00122.18 C0 HETATM 7 SE MSE A -2 78.472 90.219 61.811 1.00138.98 SE0 HETATM 8 CE MSE A -2 78.542 88.942 60.308 1.00136.05 C0 HETATM 9 H2 MSE A -2 81.676 86.519 64.891 1.00104.64 H0 HETATM 10 H MSE A -2 81.601 87.861 64.171 1.00104.69 H0 HETATM 11 H3 MSE A -2 81.289 87.824 65.662 1.00104.67 H0 HETATM 12 HA MSE A -2 79.239 87.483 65.266 1.00101.51 H0 HETATM 13 HB2 MSE A -2 78.620 87.399 62.842 1.00109.76 H0 HETATM 14 HB3 MSE A -2 80.089 87.820 62.612 1.00109.87 H0 HETATM 15 HG2 MSE A -2 79.740 89.772 63.867 1.00122.60 H0 HETATM 16 HG3 MSE A -2 78.233 89.338 64.093 1.00122.56 H0 HETATM 17 HE1 MSE A -2 78.273 89.390 59.491 1.00136.89 H0 HETATM 18 HE2 MSE A -2 77.941 88.201 60.485 1.00136.89 H0 HETATM 19 HE3 MSE A -2 79.446 88.611 60.212 1.00136.73 H0