HEADER HYDROLASE 03-AUG-21 7PCR TITLE HELICOBACTER PYLORI RNASE J COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE J; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNASE J; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI 26695; SOURCE 3 ORGANISM_TAXID: 85962; SOURCE 4 STRAIN: ATCC 700392 / 26695; SOURCE 5 GENE: RNJ, HP_1430; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNASE J, HELICOBACTER PYLORI, RNA METABOLISM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.F.LUISI,X.Y.PEI REVDAT 3 31-JAN-24 7PCR 1 REMARK REVDAT 2 27-DEC-23 7PCR 1 JRNL REVDAT 1 25-MAY-22 7PCR 0 JRNL AUTH A.TEJADA-ARRANZ,A.LULLA,M.BOUILLOUX-LAFONT,E.TURLIN,X.Y.PEI, JRNL AUTH 2 T.DOUCHE,M.MATONDO,A.H.WILLIAMS,B.RAYNAL,B.F.LUISI, JRNL AUTH 3 H.DE REUSE JRNL TITL ACETYLATION REGULATES THE OLIGOMERIZATION STATE AND ACTIVITY JRNL TITL 2 OF RNASE J, THE HELICOBACTER PYLORI MAJOR RIBONUCLEASE. JRNL REF NAT COMMUN V. 14 8072 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 38057323 JRNL DOI 10.1038/S41467-023-43825-8 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 35419 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1805 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.0300 - 6.4600 0.99 2746 149 0.2498 0.2649 REMARK 3 2 6.4600 - 5.1300 0.99 2622 155 0.2592 0.2361 REMARK 3 3 5.1300 - 4.4800 0.99 2605 138 0.1929 0.2171 REMARK 3 4 4.4800 - 4.0700 0.99 2573 155 0.1944 0.2294 REMARK 3 5 4.0700 - 3.7800 0.99 2559 150 0.2204 0.2482 REMARK 3 6 3.7800 - 3.5600 0.99 2592 143 0.2307 0.2749 REMARK 3 7 3.5600 - 3.3800 1.00 2576 128 0.2577 0.3014 REMARK 3 8 3.3800 - 3.2300 0.99 2557 119 0.2778 0.3316 REMARK 3 9 3.2300 - 3.1100 0.99 2541 143 0.3048 0.3582 REMARK 3 10 3.1100 - 3.0000 0.99 2546 156 0.3138 0.2966 REMARK 3 11 3.0000 - 2.9100 1.00 2590 130 0.3235 0.3586 REMARK 3 12 2.9100 - 2.8200 1.00 2555 117 0.3407 0.3665 REMARK 3 13 2.8200 - 2.7500 0.99 2552 122 0.3662 0.4041 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.428 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.472 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 111.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4145 REMARK 3 ANGLE : 1.212 5628 REMARK 3 CHIRALITY : 0.068 652 REMARK 3 PLANARITY : 0.006 730 REMARK 3 DIHEDRAL : 17.084 1469 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 139 THROUGH 599) REMARK 3 ORIGIN FOR THE GROUP (A): -50.9532 -1.6818 60.4735 REMARK 3 T TENSOR REMARK 3 T11: 0.3985 T22: 0.5256 REMARK 3 T33: 0.4593 T12: -0.0325 REMARK 3 T13: -0.1029 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 1.5061 L22: 0.9901 REMARK 3 L33: 2.1087 L12: -0.0484 REMARK 3 L13: -0.3029 L23: -0.5384 REMARK 3 S TENSOR REMARK 3 S11: 0.0024 S12: 0.0875 S13: -0.1228 REMARK 3 S21: -0.1089 S22: -0.1066 S23: -0.0328 REMARK 3 S31: 0.1995 S32: 0.0863 S33: 0.1034 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 600 THROUGH 691) REMARK 3 ORIGIN FOR THE GROUP (A): -38.1515 -50.2957 45.6185 REMARK 3 T TENSOR REMARK 3 T11: 2.3920 T22: 1.3018 REMARK 3 T33: 2.3708 T12: -0.0463 REMARK 3 T13: 0.2941 T23: -0.3090 REMARK 3 L TENSOR REMARK 3 L11: 1.9635 L22: 3.4101 REMARK 3 L33: 4.0330 L12: 2.5344 REMARK 3 L13: -1.2591 L23: -1.2114 REMARK 3 S TENSOR REMARK 3 S11: -2.2715 S12: 1.3266 S13: -1.1255 REMARK 3 S21: 0.1201 S22: 0.9368 S23: -1.1786 REMARK 3 S31: 1.8174 S32: 0.2862 S33: 1.0825 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7PCR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1292117405. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9778 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35677 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 56.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : 0.16000 REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3BK2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 25% POLYETHYLENE REMARK 280 GLYCOL 1000., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 79.24500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 79.24500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.13000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 79.24500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.56500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 79.24500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 160.69500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 79.24500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 160.69500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 79.24500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.56500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 79.24500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 79.24500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 107.13000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 79.24500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 79.24500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 107.13000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 79.24500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 160.69500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 79.24500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 53.56500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 79.24500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 53.56500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 79.24500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 160.69500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 79.24500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 79.24500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 107.13000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 -79.24500 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 -79.24500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 107.13000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 587 CG OD1 OD2 REMARK 470 VAL A 602 CG1 CG2 REMARK 470 PHE A 603 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 604 CG1 CG2 REMARK 470 THR A 606 OG1 CG2 REMARK 470 ILE A 607 CG1 CG2 CD1 REMARK 470 PHE A 608 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 609 CG1 CG2 REMARK 470 ASN A 610 CG OD1 ND2 REMARK 470 LYS A 611 CG CD CE NZ REMARK 470 ASN A 612 CG OD1 ND2 REMARK 470 LYS A 613 CG CD CE NZ REMARK 470 GLN A 614 CG CD OE1 NE2 REMARK 470 LEU A 616 CG CD1 CD2 REMARK 470 LEU A 617 CG CD1 CD2 REMARK 470 GLU A 618 CG CD OE1 OE2 REMARK 470 SER A 619 OG REMARK 470 SER A 620 OG REMARK 470 GLN A 621 CG CD OE1 NE2 REMARK 470 PHE A 622 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 623 OG REMARK 470 SER A 624 OG REMARK 470 LEU A 625 CG CD1 CD2 REMARK 470 LEU A 627 CG CD1 CD2 REMARK 470 VAL A 628 CG1 CG2 REMARK 470 PHE A 630 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 631 CG CD CE NZ REMARK 470 ASP A 632 CG OD1 OD2 REMARK 470 GLU A 633 CG CD OE1 OE2 REMARK 470 LYS A 634 CG CD CE NZ REMARK 470 LEU A 636 CG CD1 CD2 REMARK 470 ILE A 637 CG1 CG2 CD1 REMARK 470 LYS A 638 CG CD CE NZ REMARK 470 GLU A 639 CG CD OE1 OE2 REMARK 470 ILE A 640 CG1 CG2 CD1 REMARK 470 GLN A 641 CG CD OE1 NE2 REMARK 470 LEU A 644 CG CD1 CD2 REMARK 470 GLU A 645 CG CD OE1 OE2 REMARK 470 VAL A 646 CG1 CG2 REMARK 470 LEU A 647 CG CD1 CD2 REMARK 470 LEU A 648 CG CD1 CD2 REMARK 470 LYS A 649 CG CD CE NZ REMARK 470 SER A 650 OG REMARK 470 SER A 651 OG REMARK 470 ASN A 652 CG OD1 ND2 REMARK 470 GLU A 654 CG CD OE1 OE2 REMARK 470 ILE A 655 CG1 CG2 CD1 REMARK 470 LEU A 656 CG CD1 CD2 REMARK 470 ASN A 657 CG OD1 ND2 REMARK 470 ASN A 658 CG OD1 ND2 REMARK 470 LYS A 660 CG CD CE NZ REMARK 470 LYS A 661 CG CD CE NZ REMARK 470 LEU A 662 CG CD1 CD2 REMARK 470 GLU A 663 CG CD OE1 OE2 REMARK 470 ASP A 664 CG OD1 OD2 REMARK 470 HIS A 665 CG ND1 CD2 CE1 NE2 REMARK 470 THR A 666 OG1 CG2 REMARK 470 ARG A 667 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 668 CG OD1 ND2 REMARK 470 PHE A 669 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 670 CG1 CG2 CD1 REMARK 470 ARG A 671 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 672 CG CD CE NZ REMARK 470 LEU A 674 CG CD1 CD2 REMARK 470 PHE A 675 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 676 CG CD CE NZ REMARK 470 LYS A 677 CG CD CE NZ REMARK 470 PHE A 678 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 679 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 680 CG CD CE NZ REMARK 470 TYR A 681 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE A 684 CG1 CG2 CD1 REMARK 470 ILE A 685 CG1 CG2 CD1 REMARK 470 CYS A 686 SG REMARK 470 HIS A 687 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 689 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 690 OG REMARK 470 PHE A 691 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H HIS A 274 O HOH A 701 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE ARG A 594 O GLY A 626 16445 1.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 171 157.23 78.13 REMARK 500 THR A 440 -43.16 -130.43 REMARK 500 HIS A 526 70.00 60.98 REMARK 500 PRO A 562 2.00 -67.92 REMARK 500 ALA A 563 13.29 -147.67 REMARK 500 ALA A 600 172.13 89.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 632 -11.92 REMARK 500 REMARK 500 REMARK: NULL DBREF 7PCR A 139 691 UNP P56185 RNJ_HELPY 137 689 SEQRES 1 A 553 SER LYS ALA SER VAL LYS ILE THR PRO LEU GLY GLY LEU SEQRES 2 A 553 GLY GLU ILE GLY GLY ASN MET MET VAL ILE GLU THR PRO SEQRES 3 A 553 LYS SER ALA ILE VAL ILE ASP ALA GLY MET SER PHE PRO SEQRES 4 A 553 LYS GLU GLY LEU PHE GLY VAL ASP ILE LEU ILE PRO ASP SEQRES 5 A 553 PHE SER TYR LEU HIS GLN ILE LYS ASP LYS ILE ALA GLY SEQRES 6 A 553 ILE ILE ILE THR HIS ALA HIS GLU ASP HIS ILE GLY ALA SEQRES 7 A 553 THR PRO TYR LEU PHE LYS GLU LEU GLN PHE PRO LEU TYR SEQRES 8 A 553 GLY THR PRO LEU SER LEU GLY LEU ILE GLY SER LYS PHE SEQRES 9 A 553 ASP GLU HIS GLY LEU LYS LYS TYR ARG SER TYR PHE LYS SEQRES 10 A 553 ILE VAL GLU LYS ARG CYS PRO ILE SER VAL GLY GLU PHE SEQRES 11 A 553 ILE ILE GLU TRP ILE HIS ILE THR HIS SER ILE ILE ASP SEQRES 12 A 553 SER SER ALA LEU ALA ILE GLN THR LYS ALA GLY THR ILE SEQRES 13 A 553 ILE HIS THR GLY ASP PHE LYS ILE ASP HIS THR PRO VAL SEQRES 14 A 553 ASP ASN LEU PRO THR ASP LEU TYR ARG LEU ALA HIS TYR SEQRES 15 A 553 GLY GLU LYS GLY VAL MET LEU LEU LEU SER ASP SER THR SEQRES 16 A 553 ASN SER HIS LYS SER GLY THR THR PRO SER GLU SER THR SEQRES 17 A 553 ILE ALA PRO ALA PHE ASP THR LEU PHE LYS GLU ALA GLN SEQRES 18 A 553 GLY ARG VAL ILE MET SER THR PHE SER SER ASN ILE HIS SEQRES 19 A 553 ARG VAL TYR GLN ALA ILE GLN TYR GLY ILE LYS TYR ASN SEQRES 20 A 553 ARG LYS ILE ALA VAL ILE GLY ARG SER MET GLU LYS ASN SEQRES 21 A 553 LEU ASP ILE ALA ARG GLU LEU GLY TYR ILE HIS LEU PRO SEQRES 22 A 553 TYR GLN SER PHE ILE GLU ALA ASN GLU VAL ALA LYS TYR SEQRES 23 A 553 PRO ASP ASN GLU ILE LEU ILE VAL THR THR GLY SER GLN SEQRES 24 A 553 GLY GLU THR MET SER ALA LEU TYR ARG MET ALA THR ASP SEQRES 25 A 553 GLU HIS ARG HIS ILE SER ILE LYS PRO ASN ASP LEU VAL SEQRES 26 A 553 ILE ILE SER ALA LYS ALA ILE PRO GLY ASN GLU ALA SER SEQRES 27 A 553 VAL SER ALA VAL LEU ASN PHE LEU ILE LYS LYS GLU ALA SEQRES 28 A 553 LYS VAL ALA TYR GLN GLU PHE ASP ASN ILE HIS VAL SER SEQRES 29 A 553 GLY HIS ALA ALA GLN GLU GLU GLN LYS LEU MET LEU ARG SEQRES 30 A 553 LEU ILE LYS PRO LYS PHE PHE LEU PRO VAL HIS GLY GLU SEQRES 31 A 553 TYR ASN HIS VAL ALA ARG HIS LYS GLN THR ALA ILE SER SEQRES 32 A 553 CYS GLY VAL PRO GLU LYS ASN ILE TYR LEU MET GLU ASP SEQRES 33 A 553 GLY ASP GLN VAL GLU VAL GLY PRO ALA PHE ILE LYS LYS SEQRES 34 A 553 VAL GLY THR ILE LYS SER GLY LYS SER TYR VAL ASP ASN SEQRES 35 A 553 GLN SER ASN LEU SER ILE ASP THR SER ILE VAL GLN GLN SEQRES 36 A 553 ARG GLU GLU VAL ALA SER ALA GLY VAL PHE VAL ALA THR SEQRES 37 A 553 ILE PHE VAL ASN LYS ASN LYS GLN ALA LEU LEU GLU SER SEQRES 38 A 553 SER GLN PHE SER SER LEU GLY LEU VAL GLY PHE LYS ASP SEQRES 39 A 553 GLU LYS PRO LEU ILE LYS GLU ILE GLN GLY GLY LEU GLU SEQRES 40 A 553 VAL LEU LEU LYS SER SER ASN ALA GLU ILE LEU ASN ASN SEQRES 41 A 553 PRO LYS LYS LEU GLU ASP HIS THR ARG ASN PHE ILE ARG SEQRES 42 A 553 LYS ALA LEU PHE LYS LYS PHE ARG LYS TYR PRO ALA ILE SEQRES 43 A 553 ILE CYS HIS ALA HIS SER PHE FORMUL 2 HOH *10(H2 O) HELIX 1 AA1 PHE A 191 ILE A 197 1 7 HELIX 2 AA2 HIS A 210 GLY A 215 1 6 HELIX 3 AA3 ALA A 216 LYS A 222 1 7 HELIX 4 AA4 THR A 231 HIS A 245 1 15 HELIX 5 AA5 LEU A 247 SER A 252 5 6 HELIX 6 AA6 ASP A 313 GLY A 324 1 12 HELIX 7 AA7 SER A 343 THR A 346 5 4 HELIX 8 AA8 ILE A 347 GLU A 357 1 11 HELIX 9 AA9 ASN A 370 TYR A 384 1 15 HELIX 10 AB1 GLY A 392 LEU A 405 1 14 HELIX 11 AB2 PRO A 411 GLN A 413 5 3 HELIX 12 AB3 GLU A 417 TYR A 424 5 8 HELIX 13 AB4 PRO A 425 ASN A 427 5 3 HELIX 14 AB5 THR A 440 THR A 449 1 10 HELIX 15 AB6 ASN A 473 LYS A 487 1 15 HELIX 16 AB7 TYR A 493 ASP A 497 5 5 HELIX 17 AB8 ALA A 506 LYS A 518 1 13 HELIX 18 AB9 GLU A 528 CYS A 542 1 15 HELIX 19 AC1 PRO A 545 ILE A 549 5 5 HELIX 20 AC2 THR A 588 SER A 599 1 12 HELIX 21 AC3 GLY A 629 SER A 650 1 22 HELIX 22 AC4 ASN A 652 ASN A 658 1 7 HELIX 23 AC5 ASN A 658 ARG A 679 1 22 SHEET 1 AA1 8 PHE A 254 ILE A 256 0 SHEET 2 AA1 8 LEU A 228 GLY A 230 1 N LEU A 228 O LYS A 255 SHEET 3 AA1 8 ILE A 201 ILE A 205 1 N ILE A 204 O TYR A 229 SHEET 4 AA1 8 SER A 166 ILE A 170 1 N VAL A 169 O ILE A 205 SHEET 5 AA1 8 MET A 158 THR A 163 -1 N THR A 163 O SER A 166 SHEET 6 AA1 8 VAL A 143 GLY A 149 -1 N THR A 146 O VAL A 160 SHEET 7 AA1 8 ASP A 556 GLY A 561 -1 O VAL A 558 N ILE A 145 SHEET 8 AA1 8 PHE A 564 THR A 570 -1 O LYS A 566 N GLU A 559 SHEET 1 AA2 3 LEU A 187 PRO A 189 0 SHEET 2 AA2 3 LYS A 575 VAL A 578 -1 O SER A 576 N ILE A 188 SHEET 3 AA2 3 SER A 585 ASP A 587 -1 O ILE A 586 N TYR A 577 SHEET 1 AA3 6 ILE A 263 VAL A 265 0 SHEET 2 AA3 6 PHE A 268 HIS A 274 -1 O PHE A 268 N VAL A 265 SHEET 3 AA3 6 SER A 283 THR A 289 -1 O GLN A 288 N ILE A 269 SHEET 4 AA3 6 GLY A 292 HIS A 296 -1 O ILE A 294 N ILE A 287 SHEET 5 AA3 6 VAL A 325 ASP A 331 1 O LEU A 329 N ILE A 295 SHEET 6 AA3 6 PRO A 519 VAL A 525 1 O LEU A 523 N LEU A 328 SHEET 1 AA4 6 PHE A 415 ILE A 416 0 SHEET 2 AA4 6 LYS A 387 ILE A 391 1 N ILE A 388 O ILE A 416 SHEET 3 AA4 6 ILE A 429 THR A 433 1 O VAL A 432 N ILE A 391 SHEET 4 AA4 6 VAL A 362 SER A 365 1 N VAL A 362 O ILE A 431 SHEET 5 AA4 6 LEU A 462 ILE A 465 1 O ILE A 464 N ILE A 363 SHEET 6 AA4 6 LYS A 490 ALA A 492 1 O ALA A 492 N VAL A 463 SHEET 1 AA5 3 LEU A 616 LEU A 625 0 SHEET 2 AA5 3 VAL A 602 VAL A 609 -1 N PHE A 608 O LEU A 617 SHEET 3 AA5 3 ALA A 683 HIS A 689 1 O HIS A 689 N ILE A 607 CRYST1 158.490 158.490 214.260 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006310 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006310 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004667 0.00000