HEADER LYASE 04-AUG-21 7PCT
TITLE BURG E232Q MUTANT (HOLO) IN COMPLEX WITH ENOL-OXALACETATE (15):
TITLE 2 BIOSYNTHESIS OF CYCLOPROPANOL RINGS IN BACTERIAL TOXINS
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: KETOL-ACID REDUCTOISOMERASE;
COMPND 3 CHAIN: A, B;
COMPND 4 EC: 1.1.1.86;
COMPND 5 ENGINEERED: YES;
COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA THAILANDENSIS (STRAIN ATCC 700388
SOURCE 3 / DSM 13276 / CIP 106301 / E264);
SOURCE 4 ORGANISM_TAXID: 271848;
SOURCE 5 STRAIN: ATCC 700388 / DSM 13276 / CIP 106301 / E264;
SOURCE 6 GENE: ILVC-2, BTH_II2094;
SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008
KEYWDS PATHOGENS, NATURAL PRODUCTS, TOXINS, BIOSYNTHESIS, CATALYSIS,
KEYWDS 2 MUTAGENESIS, LYASE
EXPDTA X-RAY DIFFRACTION
AUTHOR F.TROTTMANN,K.ISHIDA,M.ISHIDA,H.KRIES,M.GROLL,C.HERTWECK
REVDAT 3 31-JAN-24 7PCT 1 REMARK
REVDAT 2 17-AUG-22 7PCT 1 JRNL
REVDAT 1 10-AUG-22 7PCT 0
JRNL AUTH F.TROTTMANN,K.ISHIDA,M.ISHIDA-ITO,H.KRIES,M.GROLL,C.HERTWECK
JRNL TITL PATHOGENIC BACTERIA REMODEL CENTRAL METABOLIC ENZYME TO
JRNL TITL 2 BUILD A CYCLOPROPANOL WARHEAD.
JRNL REF NAT.CHEM. V. 14 884 2022
JRNL REFN ESSN 1755-4349
JRNL PMID 35906404
JRNL DOI 10.1038/S41557-022-01005-Z
REMARK 2
REMARK 2 RESOLUTION. 1.35 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0258
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4
REMARK 3 NUMBER OF REFLECTIONS : 132865
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.157
REMARK 3 R VALUE (WORKING SET) : 0.156
REMARK 3 FREE R VALUE : 0.180
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 6993
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39
REMARK 3 REFLECTION IN BIN (WORKING SET) : 9279
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.64
REMARK 3 BIN R VALUE (WORKING SET) : 0.2910
REMARK 3 BIN FREE R VALUE SET COUNT : 488
REMARK 3 BIN FREE R VALUE : 0.3260
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 5209
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 122
REMARK 3 SOLVENT ATOMS : 742
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.77
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 1.08000
REMARK 3 B22 (A**2) : -0.92000
REMARK 3 B33 (A**2) : 0.29000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : -0.88000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.060
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.054
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.169
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5431 ; 0.006 ; 0.013
REMARK 3 BOND LENGTHS OTHERS (A): 5018 ; 0.001 ; 0.017
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7379 ; 1.437 ; 1.644
REMARK 3 BOND ANGLES OTHERS (DEGREES): 11512 ; 1.477 ; 1.577
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 679 ; 5.962 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 324 ;29.029 ;20.370
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 818 ;11.252 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 60 ;17.310 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 681 ; 0.071 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6281 ; 0.007 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 1245 ; 0.001 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): 10449 ; 0.996 ; 3.000
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY
REMARK 4
REMARK 4 7PCT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-AUG-21.
REMARK 100 THE DEPOSITION ID IS D_1292117493.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 28-MAR-21
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 8.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SLS
REMARK 200 BEAMLINE : X06SA
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 139870
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350
REMARK 200 RESOLUTION RANGE LOW (A) : 30.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3
REMARK 200 DATA REDUNDANCY : 3.000
REMARK 200 R MERGE (I) : 0.06800
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.1000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : 0.53600
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 7PCC
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 42.80
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS; O.2 M NAAC, 16% PEG 4K, 2
REMARK 280 MM NAD+, 5 MM MGCL2, PH 8.5, VAPOR DIFFUSION, SITTING DROP,
REMARK 280 TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.01500
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 16780 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 23600 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -158.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A -4
REMARK 465 SER A -3
REMARK 465 HIS A -2
REMARK 465 MET A -1
REMARK 465 ALA A 0
REMARK 465 SER A 1
REMARK 465 ALA A 341
REMARK 465 GLN A 342
REMARK 465 ALA A 343
REMARK 465 PRO A 344
REMARK 465 ALA A 345
REMARK 465 ASP A 346
REMARK 465 VAL A 347
REMARK 465 GLU A 348
REMARK 465 PRO A 349
REMARK 465 GLU A 350
REMARK 465 ALA A 351
REMARK 465 ALA A 352
REMARK 465 ARG A 353
REMARK 465 GLY B -4
REMARK 465 SER B -3
REMARK 465 HIS B -2
REMARK 465 ALA B 341
REMARK 465 GLN B 342
REMARK 465 ALA B 343
REMARK 465 PRO B 344
REMARK 465 ALA B 345
REMARK 465 ASP B 346
REMARK 465 VAL B 347
REMARK 465 GLU B 348
REMARK 465 PRO B 349
REMARK 465 GLU B 350
REMARK 465 ALA B 351
REMARK 465 ALA B 352
REMARK 465 ARG B 353
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 TYR A 26 34.34 -147.12
REMARK 500 LEU A 80 58.63 -114.02
REMARK 500 PHE A 197 -62.24 -96.08
REMARK 500 TYR A 228 -27.85 -169.70
REMARK 500 TYR B 26 33.66 -145.16
REMARK 500 LEU B 80 59.40 -113.01
REMARK 500 ALA B 177 -60.34 -95.78
REMARK 500 PHE B 197 -60.86 -99.61
REMARK 500 TYR B 228 -27.54 -169.96
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 802 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 191 OD1
REMARK 620 2 HOH A 949 O 91.9
REMARK 620 3 HOH A1078 O 85.9 173.2
REMARK 620 4 Y3P B 401 O3 96.6 83.5 90.3
REMARK 620 5 Y3P B 401 O4 172.3 94.4 88.3 88.4
REMARK 620 6 HOH B 557 O 93.0 90.9 95.6 169.0 82.5
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 803 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 191 OD2
REMARK 620 2 GLU A 195 OE2 90.7
REMARK 620 3 HOH A1024 O 88.0 176.3
REMARK 620 4 HOH A1025 O 90.9 91.4 92.0
REMARK 620 5 Y3P B 401 O2 177.6 90.1 91.1 91.3
REMARK 620 6 Y3P B 401 O3 95.4 86.7 90.0 173.4 82.4
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG B 403 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 Y3P A 804 O3
REMARK 620 2 Y3P A 804 O5 87.8
REMARK 620 3 HOH A 999 O 167.0 82.3
REMARK 620 4 ASP B 191 OD1 98.5 172.5 92.0
REMARK 620 5 HOH B 523 O 83.7 94.6 88.7 90.2
REMARK 620 6 HOH B 628 O 91.5 88.4 96.5 87.4 174.3
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG B 404 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 Y3P A 804 O1
REMARK 620 2 Y3P A 804 O3 80.0
REMARK 620 3 ASP B 191 OD2 175.9 96.0
REMARK 620 4 GLU B 195 OE2 89.3 85.6 91.1
REMARK 620 5 HOH B 605 O 92.3 171.9 91.7 91.9
REMARK 620 6 HOH B 626 O 90.3 88.9 88.9 174.5 93.7
REMARK 620 N 1 2 3 4 5
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 6AQJ RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURES OF STAPHYLOCOCCUS AUREUS KETOL-ACID
REMARK 900 REDUCTOISOMERASE IN COMPLEX WITH TWO TRANSITION STATE ANALOGS THAT
REMARK 900 HAVE BIOCIDAL ACTIVITY.
DBREF 7PCT A 2 353 UNP Q2T3G7 Q2T3G7_BURTA 2 353
DBREF 7PCT B 2 353 UNP Q2T3G7 Q2T3G7_BURTA 2 353
SEQADV 7PCT GLY A -4 UNP Q2T3G7 EXPRESSION TAG
SEQADV 7PCT SER A -3 UNP Q2T3G7 EXPRESSION TAG
SEQADV 7PCT HIS A -2 UNP Q2T3G7 EXPRESSION TAG
SEQADV 7PCT MET A -1 UNP Q2T3G7 EXPRESSION TAG
SEQADV 7PCT ALA A 0 UNP Q2T3G7 EXPRESSION TAG
SEQADV 7PCT SER A 1 UNP Q2T3G7 EXPRESSION TAG
SEQADV 7PCT GLN A 232 UNP Q2T3G7 GLU 232 ENGINEERED MUTATION
SEQADV 7PCT GLY B -4 UNP Q2T3G7 EXPRESSION TAG
SEQADV 7PCT SER B -3 UNP Q2T3G7 EXPRESSION TAG
SEQADV 7PCT HIS B -2 UNP Q2T3G7 EXPRESSION TAG
SEQADV 7PCT MET B -1 UNP Q2T3G7 EXPRESSION TAG
SEQADV 7PCT ALA B 0 UNP Q2T3G7 EXPRESSION TAG
SEQADV 7PCT SER B 1 UNP Q2T3G7 EXPRESSION TAG
SEQADV 7PCT GLN B 232 UNP Q2T3G7 GLU 232 ENGINEERED MUTATION
SEQRES 1 A 358 GLY SER HIS MET ALA SER ASN ASP LEU ILE TYR GLN ASP
SEQRES 2 A 358 GLU HIS ALA SER LEU GLN PRO LEU GLU GLY ARG THR VAL
SEQRES 3 A 358 ALA VAL ILE GLY TYR GLY ILE GLN GLY ARG ALA PHE ALA
SEQRES 4 A 358 ALA ASN LEU ARG ASP SER GLY VAL ALA VAL ARG VAL GLY
SEQRES 5 A 358 ASN ILE ASP ASP ARG TYR PHE GLU LEU ALA ARG ALA GLU
SEQRES 6 A 358 GLY HIS ARG VAL THR ASN ILE ALA GLU ALA VAL ALA HIS
SEQRES 7 A 358 ALA ASP ILE VAL LEU LEU LEU ILE PRO ASP GLU ALA HIS
SEQRES 8 A 358 GLY ALA VAL PHE ASP VAL ASP ILE ALA PRO ASN LEU ARG
SEQRES 9 A 358 ASP GLY ALA LEU LEU CYS VAL ALA HIS GLY HIS SER LEU
SEQRES 10 A 358 VAL GLN GLY ASP VAL ARG PRO LEU PRO GLY ARG ASP LEU
SEQRES 11 A 358 ALA MET LEU ALA PRO ARG MET TYR GLY ASP PRO ILE ARG
SEQRES 12 A 358 ARG TYR TYR LEU ALA GLY GLN GLY ALA PRO ALA TYR PHE
SEQRES 13 A 358 ASP ILE VAL ALA ASP HIS THR GLY ARG ALA ARG ASP ARG
SEQRES 14 A 358 VAL LEU ALA ILE ALA ARG ALA VAL GLY PHE THR ARG ALA
SEQRES 15 A 358 GLY VAL MET ALA LEU GLY TYR ARG GLN GLU THR PHE LEU
SEQRES 16 A 358 ASP LEU PHE GLN GLU GLN PHE LEU ALA PRO ALA LEU VAL
SEQRES 17 A 358 ASP LEU VAL GLU THR GLY PHE GLN VAL LEU VAL GLU ARG
SEQRES 18 A 358 GLY PHE ASN PRO LYS ALA ALA LEU LEU GLU VAL TYR GLY
SEQRES 19 A 358 SER GLY GLN MET GLY LYS MET MET LEU ASP GLY ALA ASP
SEQRES 20 A 358 ILE GLY LEU ASP GLU VAL VAL ALA LEU GLN GLY SER PRO
SEQRES 21 A 358 THR CYS GLN VAL GLY TYR HIS ARG TRP ARG GLY ARG THR
SEQRES 22 A 358 LEU PRO THR ALA VAL ARG GLU LEU ALA ALA ARG VAL LEU
SEQRES 23 A 358 ASP GLN ILE GLU GLY GLY ASP PHE SER ALA TYR LEU LYS
SEQRES 24 A 358 GLU GLN ALA SER ASN ASP TYR ALA SER LEU ASP ASP ALA
SEQRES 25 A 358 ARG ARG ALA ALA LEU LYS ARG PRO LEU ASN VAL ALA HIS
SEQRES 26 A 358 ALA GLN VAL ARG ALA ALA PHE ARG PHE PRO THR GLU ALA
SEQRES 27 A 358 ALA GLY GLY LEU TYR GLN ALA ALA GLN ALA PRO ALA ASP
SEQRES 28 A 358 VAL GLU PRO GLU ALA ALA ARG
SEQRES 1 B 358 GLY SER HIS MET ALA SER ASN ASP LEU ILE TYR GLN ASP
SEQRES 2 B 358 GLU HIS ALA SER LEU GLN PRO LEU GLU GLY ARG THR VAL
SEQRES 3 B 358 ALA VAL ILE GLY TYR GLY ILE GLN GLY ARG ALA PHE ALA
SEQRES 4 B 358 ALA ASN LEU ARG ASP SER GLY VAL ALA VAL ARG VAL GLY
SEQRES 5 B 358 ASN ILE ASP ASP ARG TYR PHE GLU LEU ALA ARG ALA GLU
SEQRES 6 B 358 GLY HIS ARG VAL THR ASN ILE ALA GLU ALA VAL ALA HIS
SEQRES 7 B 358 ALA ASP ILE VAL LEU LEU LEU ILE PRO ASP GLU ALA HIS
SEQRES 8 B 358 GLY ALA VAL PHE ASP VAL ASP ILE ALA PRO ASN LEU ARG
SEQRES 9 B 358 ASP GLY ALA LEU LEU CYS VAL ALA HIS GLY HIS SER LEU
SEQRES 10 B 358 VAL GLN GLY ASP VAL ARG PRO LEU PRO GLY ARG ASP LEU
SEQRES 11 B 358 ALA MET LEU ALA PRO ARG MET TYR GLY ASP PRO ILE ARG
SEQRES 12 B 358 ARG TYR TYR LEU ALA GLY GLN GLY ALA PRO ALA TYR PHE
SEQRES 13 B 358 ASP ILE VAL ALA ASP HIS THR GLY ARG ALA ARG ASP ARG
SEQRES 14 B 358 VAL LEU ALA ILE ALA ARG ALA VAL GLY PHE THR ARG ALA
SEQRES 15 B 358 GLY VAL MET ALA LEU GLY TYR ARG GLN GLU THR PHE LEU
SEQRES 16 B 358 ASP LEU PHE GLN GLU GLN PHE LEU ALA PRO ALA LEU VAL
SEQRES 17 B 358 ASP LEU VAL GLU THR GLY PHE GLN VAL LEU VAL GLU ARG
SEQRES 18 B 358 GLY PHE ASN PRO LYS ALA ALA LEU LEU GLU VAL TYR GLY
SEQRES 19 B 358 SER GLY GLN MET GLY LYS MET MET LEU ASP GLY ALA ASP
SEQRES 20 B 358 ILE GLY LEU ASP GLU VAL VAL ALA LEU GLN GLY SER PRO
SEQRES 21 B 358 THR CYS GLN VAL GLY TYR HIS ARG TRP ARG GLY ARG THR
SEQRES 22 B 358 LEU PRO THR ALA VAL ARG GLU LEU ALA ALA ARG VAL LEU
SEQRES 23 B 358 ASP GLN ILE GLU GLY GLY ASP PHE SER ALA TYR LEU LYS
SEQRES 24 B 358 GLU GLN ALA SER ASN ASP TYR ALA SER LEU ASP ASP ALA
SEQRES 25 B 358 ARG ARG ALA ALA LEU LYS ARG PRO LEU ASN VAL ALA HIS
SEQRES 26 B 358 ALA GLN VAL ARG ALA ALA PHE ARG PHE PRO THR GLU ALA
SEQRES 27 B 358 ALA GLY GLY LEU TYR GLN ALA ALA GLN ALA PRO ALA ASP
SEQRES 28 B 358 VAL GLU PRO GLU ALA ALA ARG
HET NAD A 801 44
HET MG A 802 1
HET MG A 803 1
HET Y3P A 804 9
HET GOL A 805 6
HET Y3P B 401 9
HET NAD B 402 44
HET MG B 403 1
HET MG B 404 1
HET GOL B 405 6
HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE
HETNAM MG MAGNESIUM ION
HETNAM Y3P (~{Z})-2-OXIDANYLBUT-2-ENEDIOIC ACID
HETNAM GOL GLYCEROL
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 3 NAD 2(C21 H27 N7 O14 P2)
FORMUL 4 MG 4(MG 2+)
FORMUL 6 Y3P 2(C4 H4 O5)
FORMUL 7 GOL 2(C3 H8 O3)
FORMUL 13 HOH *742(H2 O)
HELIX 1 AA1 GLN A 7 ALA A 11 5 5
HELIX 2 AA2 LEU A 13 GLU A 17 5 5
HELIX 3 AA3 GLY A 27 SER A 40 1 14
HELIX 4 AA4 ASP A 51 GLU A 60 1 10
HELIX 5 AA5 ASN A 66 HIS A 73 1 8
HELIX 6 AA6 PRO A 82 GLU A 84 5 3
HELIX 7 AA7 ALA A 85 ASP A 93 1 9
HELIX 8 AA8 GLY A 109 GLN A 114 1 6
HELIX 9 AA9 TYR A 133 ALA A 143 1 11
HELIX 10 AB1 ARG A 160 GLY A 173 1 14
HELIX 11 AB2 PHE A 174 ALA A 177 5 4
HELIX 12 AB3 GLY A 183 PHE A 197 1 15
HELIX 13 AB4 PHE A 197 ARG A 216 1 20
HELIX 14 AB5 ASN A 219 TYR A 228 1 10
HELIX 15 AB6 GLY A 231 GLY A 244 1 14
HELIX 16 AB7 GLY A 244 GLY A 253 1 10
HELIX 17 AB8 SER A 254 ARG A 265 1 12
HELIX 18 AB9 PRO A 270 GLY A 286 1 17
HELIX 19 AC1 GLY A 287 ALA A 297 1 11
HELIX 20 AC2 ALA A 297 LYS A 313 1 17
HELIX 21 AC3 ARG A 314 PHE A 327 1 14
HELIX 22 AC4 MET B -1 ASP B 3 5 5
HELIX 23 AC5 GLN B 7 ALA B 11 5 5
HELIX 24 AC6 LEU B 13 GLU B 17 5 5
HELIX 25 AC7 GLY B 27 SER B 40 1 14
HELIX 26 AC8 ASP B 51 GLU B 60 1 10
HELIX 27 AC9 ASN B 66 HIS B 73 1 8
HELIX 28 AD1 PRO B 82 GLU B 84 5 3
HELIX 29 AD2 ALA B 85 ASP B 93 1 9
HELIX 30 AD3 GLY B 109 GLN B 114 1 6
HELIX 31 AD4 TYR B 133 ALA B 143 1 11
HELIX 32 AD5 ARG B 160 GLY B 173 1 14
HELIX 33 AD6 PHE B 174 ALA B 177 5 4
HELIX 34 AD7 GLY B 183 PHE B 197 1 15
HELIX 35 AD8 PHE B 197 ARG B 216 1 20
HELIX 36 AD9 ASN B 219 TYR B 228 1 10
HELIX 37 AE1 GLY B 231 GLY B 244 1 14
HELIX 38 AE2 GLY B 244 GLY B 253 1 10
HELIX 39 AE3 SER B 254 ARG B 265 1 12
HELIX 40 AE4 PRO B 270 GLY B 286 1 17
HELIX 41 AE5 GLY B 287 ALA B 297 1 11
HELIX 42 AE6 ALA B 297 LYS B 313 1 17
HELIX 43 AE7 ARG B 314 PHE B 327 1 14
SHEET 1 AA1 9 ILE A 5 TYR A 6 0
SHEET 2 AA1 9 VAL A 179 ALA A 181 -1 O VAL A 179 N TYR A 6
SHEET 3 AA1 9 ALA A 149 ASP A 156 1 N ALA A 149 O MET A 180
SHEET 4 AA1 9 ASP A 124 PRO A 130 -1 N ALA A 129 O TYR A 150
SHEET 5 AA1 9 LEU A 103 VAL A 106 1 N VAL A 106 O LEU A 128
SHEET 6 AA1 9 ILE A 76 LEU A 79 1 N LEU A 79 O CYS A 105
SHEET 7 AA1 9 THR A 20 ILE A 24 1 N ILE A 24 O LEU A 78
SHEET 8 AA1 9 ALA A 43 GLY A 47 1 O ARG A 45 N VAL A 23
SHEET 9 AA1 9 VAL A 64 THR A 65 1 O THR A 65 N VAL A 46
SHEET 1 AA2 9 ILE B 5 TYR B 6 0
SHEET 2 AA2 9 VAL B 179 ALA B 181 -1 O VAL B 179 N TYR B 6
SHEET 3 AA2 9 ALA B 149 ASP B 156 1 N ALA B 149 O MET B 180
SHEET 4 AA2 9 ASP B 124 PRO B 130 -1 N ALA B 129 O TYR B 150
SHEET 5 AA2 9 LEU B 103 VAL B 106 1 N VAL B 106 O LEU B 128
SHEET 6 AA2 9 ILE B 76 LEU B 79 1 N VAL B 77 O LEU B 103
SHEET 7 AA2 9 THR B 20 ILE B 24 1 N ALA B 22 O ILE B 76
SHEET 8 AA2 9 ALA B 43 GLY B 47 1 O ARG B 45 N VAL B 23
SHEET 9 AA2 9 VAL B 64 THR B 65 1 O THR B 65 N VAL B 46
LINK OD1 ASP A 191 MG MG A 802 1555 1555 2.02
LINK OD2 ASP A 191 MG MG A 803 1555 1555 2.03
LINK OE2 GLU A 195 MG MG A 803 1555 1555 2.08
LINK MG MG A 802 O HOH A 949 1555 1555 2.13
LINK MG MG A 802 O HOH A1078 1555 1555 2.11
LINK MG MG A 802 O3 Y3P B 401 1555 1555 2.07
LINK MG MG A 802 O4 Y3P B 401 1555 1555 2.02
LINK MG MG A 802 O HOH B 557 1555 1555 2.08
LINK MG MG A 803 O HOH A1024 1555 1555 2.10
LINK MG MG A 803 O HOH A1025 1555 1555 2.08
LINK MG MG A 803 O2 Y3P B 401 1555 1555 2.07
LINK MG MG A 803 O3 Y3P B 401 1555 1555 2.08
LINK O3 Y3P A 804 MG MG B 403 1555 1555 2.10
LINK O5 Y3P A 804 MG MG B 403 1555 1555 2.06
LINK O1 Y3P A 804 MG MG B 404 1555 1555 2.10
LINK O3 Y3P A 804 MG MG B 404 1555 1555 2.13
LINK O HOH A 999 MG MG B 403 1555 1555 2.08
LINK OD1 ASP B 191 MG MG B 403 1555 1555 1.99
LINK OD2 ASP B 191 MG MG B 404 1555 1555 1.99
LINK OE2 GLU B 195 MG MG B 404 1555 1555 2.06
LINK MG MG B 403 O HOH B 523 1555 1555 2.12
LINK MG MG B 403 O HOH B 628 1555 1555 2.10
LINK MG MG B 404 O HOH B 605 1555 1555 2.08
LINK MG MG B 404 O HOH B 626 1555 1555 2.07
CRYST1 58.290 76.030 78.230 90.00 106.14 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.017156 0.000000 0.004965 0.00000
SCALE2 0.000000 0.013153 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013307 0.00000