HEADER NUCLEAR PROTEIN 07-AUG-21 7PDT TITLE CRYSTAL STRUCTURE OF A MUTATED FORM OF RXRALPHA LIGAND BINDING DOMAIN TITLE 2 IN COMPLEX WITH BMS649 AND A COACTIVATOR FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOIC ACID RECEPTOR RXR-ALPHA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NUCLEAR RECEPTOR SUBFAMILY 2 GROUP B MEMBER 1,RETINOID X COMPND 5 RECEPTOR ALPHA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 9 CHAIN: U, V; COMPND 10 SYNONYM: NCOA-2,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 75,BHLHE75, COMPND 11 TRANSCRIPTIONAL INTERMEDIARY FACTOR 2,HTIF2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RXRA, NR2B1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS NUCLEAR HORMONE RECEPTOR, LIGAND BINDING, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.LE MAIRE,W.BOURGUET,L.GUEE REVDAT 4 31-JAN-24 7PDT 1 REMARK REVDAT 3 17-AUG-22 7PDT 1 JRNL REVDAT 2 10-AUG-22 7PDT 1 JRNL REVDAT 1 03-AUG-22 7PDT 0 JRNL AUTH A.LE MAIRE,M.REY,V.VIVAT,L.GUEE,P.BLANC,C.MALOSSE, JRNL AUTH 2 J.CHAMOT-ROOKE,P.GERMAIN,W.BOURGUET JRNL TITL DESIGN AND IN VITRO CHARACTERIZATION OF RXR VARIANTS AS JRNL TITL 2 TOOLS TO INVESTIGATE THE BIOLOGICAL ROLE OF ENDOGENOUS JRNL TITL 3 REXINOIDS. JRNL REF J.MOL.ENDOCRINOL. V. 69 377 2022 JRNL REFN ISSN 0952-5041 JRNL PMID 35900852 JRNL DOI 10.1530/JME-22-0021 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 7531 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 761 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8400 - 5.6400 0.98 1439 145 0.1809 0.1810 REMARK 3 2 5.6400 - 4.4800 0.99 1345 166 0.1852 0.2102 REMARK 3 3 4.4800 - 3.9100 0.99 1342 138 0.1784 0.1913 REMARK 3 4 3.9100 - 3.5600 0.99 1335 142 0.2077 0.2357 REMARK 3 5 3.5500 - 3.3000 0.99 1309 170 0.2565 0.2633 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.284 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.544 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 83.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3554 REMARK 3 ANGLE : 0.658 4817 REMARK 3 CHIRALITY : 0.040 558 REMARK 3 PLANARITY : 0.004 633 REMARK 3 DIHEDRAL : 14.862 1351 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 268 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5553 45.2346 45.7474 REMARK 3 T TENSOR REMARK 3 T11: 0.4722 T22: 0.7324 REMARK 3 T33: 0.4547 T12: -0.0795 REMARK 3 T13: -0.0724 T23: -0.0880 REMARK 3 L TENSOR REMARK 3 L11: 1.2262 L22: 0.6484 REMARK 3 L33: 2.5711 L12: -0.2966 REMARK 3 L13: -1.5359 L23: -0.2909 REMARK 3 S TENSOR REMARK 3 S11: -0.2679 S12: -0.2005 S13: -0.0576 REMARK 3 S21: 0.4307 S22: -0.1245 S23: -0.1394 REMARK 3 S31: -0.6447 S32: -0.1099 S33: 0.3248 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 269 THROUGH 335 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.0205 51.1753 45.1213 REMARK 3 T TENSOR REMARK 3 T11: 0.5738 T22: 0.5969 REMARK 3 T33: 0.5135 T12: 0.0462 REMARK 3 T13: -0.0028 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 2.9517 L22: 2.8959 REMARK 3 L33: 3.1568 L12: -0.1104 REMARK 3 L13: -1.0657 L23: -2.0965 REMARK 3 S TENSOR REMARK 3 S11: 0.0110 S12: -0.0141 S13: 0.2194 REMARK 3 S21: 0.1377 S22: -0.0195 S23: 0.1512 REMARK 3 S31: -0.2801 S32: -0.2490 S33: 0.0597 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 336 THROUGH 416 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.7705 40.2628 39.7032 REMARK 3 T TENSOR REMARK 3 T11: 0.5065 T22: 0.7604 REMARK 3 T33: 0.4751 T12: 0.0072 REMARK 3 T13: 0.0097 T23: -0.0404 REMARK 3 L TENSOR REMARK 3 L11: 2.5003 L22: 2.8395 REMARK 3 L33: 3.8601 L12: 1.5285 REMARK 3 L13: -1.7451 L23: -0.4622 REMARK 3 S TENSOR REMARK 3 S11: -0.2200 S12: 0.5618 S13: -0.2309 REMARK 3 S21: -0.1033 S22: 0.0254 S23: -0.0537 REMARK 3 S31: 0.2725 S32: -0.6359 S33: 0.1351 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 417 THROUGH 447 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.8869 44.1370 39.2235 REMARK 3 T TENSOR REMARK 3 T11: 0.6472 T22: 0.6585 REMARK 3 T33: 0.5636 T12: 0.0207 REMARK 3 T13: -0.0231 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 4.1712 L22: 5.2881 REMARK 3 L33: 2.5721 L12: 1.2564 REMARK 3 L13: -0.1313 L23: 0.8605 REMARK 3 S TENSOR REMARK 3 S11: -0.0496 S12: 0.2468 S13: -0.2876 REMARK 3 S21: 0.0336 S22: -0.0352 S23: -0.5414 REMARK 3 S31: -0.0725 S32: 0.0970 S33: 0.2212 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 448 THROUGH 461 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.4819 60.5722 47.6344 REMARK 3 T TENSOR REMARK 3 T11: 0.6425 T22: 0.7587 REMARK 3 T33: 0.9576 T12: 0.0767 REMARK 3 T13: -0.1265 T23: 0.0257 REMARK 3 L TENSOR REMARK 3 L11: 2.2156 L22: 8.8669 REMARK 3 L33: 9.5053 L12: 1.3888 REMARK 3 L13: -2.6739 L23: -0.4151 REMARK 3 S TENSOR REMARK 3 S11: 0.3060 S12: -1.6869 S13: 1.1361 REMARK 3 S21: 0.4921 S22: -0.2669 S23: -0.9736 REMARK 3 S31: 0.0764 S32: 0.6936 S33: -0.0286 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'U' AND (RESID 250 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.7631 56.5472 59.6428 REMARK 3 T TENSOR REMARK 3 T11: 0.4839 T22: 0.8388 REMARK 3 T33: 0.7945 T12: -0.0818 REMARK 3 T13: 0.1522 T23: -0.1204 REMARK 3 L TENSOR REMARK 3 L11: 4.9740 L22: 2.9882 REMARK 3 L33: 7.1241 L12: -2.2428 REMARK 3 L13: 3.8313 L23: 0.2064 REMARK 3 S TENSOR REMARK 3 S11: 0.0262 S12: -0.7934 S13: 1.0223 REMARK 3 S21: 0.6052 S22: -0.3717 S23: -1.0180 REMARK 3 S31: -0.0005 S32: -0.3131 S33: -0.1068 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 234 THROUGH 323 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.4028 23.9497 34.4511 REMARK 3 T TENSOR REMARK 3 T11: 0.5814 T22: 0.5741 REMARK 3 T33: 0.6216 T12: -0.0295 REMARK 3 T13: 0.0640 T23: -0.1528 REMARK 3 L TENSOR REMARK 3 L11: 3.0430 L22: 2.3908 REMARK 3 L33: 5.6659 L12: 0.6139 REMARK 3 L13: 3.6471 L23: 0.8531 REMARK 3 S TENSOR REMARK 3 S11: -0.2859 S12: 0.5846 S13: -0.6959 REMARK 3 S21: -0.3196 S22: 0.3128 S23: -0.2043 REMARK 3 S31: 0.1826 S32: 0.3630 S33: 0.0820 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 324 THROUGH 368 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.1295 28.3005 52.7397 REMARK 3 T TENSOR REMARK 3 T11: 0.7300 T22: 0.6209 REMARK 3 T33: 0.5560 T12: -0.0370 REMARK 3 T13: 0.0267 T23: 0.0757 REMARK 3 L TENSOR REMARK 3 L11: 4.6997 L22: 3.3114 REMARK 3 L33: 0.5547 L12: -0.3282 REMARK 3 L13: -0.3191 L23: 0.7959 REMARK 3 S TENSOR REMARK 3 S11: 0.2115 S12: -0.2721 S13: -0.3100 REMARK 3 S21: 0.1040 S22: -0.0303 S23: 0.1260 REMARK 3 S31: 0.4618 S32: -0.1006 S33: -0.1808 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 369 THROUGH 418 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.6457 23.6189 34.9439 REMARK 3 T TENSOR REMARK 3 T11: 0.7182 T22: 0.7691 REMARK 3 T33: 0.5169 T12: -0.1738 REMARK 3 T13: 0.0616 T23: -0.1394 REMARK 3 L TENSOR REMARK 3 L11: 3.9487 L22: 4.7737 REMARK 3 L33: 2.1351 L12: 1.7729 REMARK 3 L13: -0.8889 L23: -0.8079 REMARK 3 S TENSOR REMARK 3 S11: -0.1837 S12: 0.6896 S13: -0.4179 REMARK 3 S21: 0.2633 S22: 0.1693 S23: 0.3539 REMARK 3 S31: 0.3146 S32: -0.7364 S33: 0.0141 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 419 THROUGH 447 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.9648 35.7739 42.4027 REMARK 3 T TENSOR REMARK 3 T11: 0.6145 T22: 0.5689 REMARK 3 T33: 0.4337 T12: 0.0623 REMARK 3 T13: 0.0426 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 6.8140 L22: 4.8247 REMARK 3 L33: 2.7579 L12: 2.8385 REMARK 3 L13: -1.9815 L23: 0.9601 REMARK 3 S TENSOR REMARK 3 S11: 0.3298 S12: 0.4092 S13: 0.1249 REMARK 3 S21: 0.8038 S22: 0.0914 S23: 0.0487 REMARK 3 S31: -0.0805 S32: -0.0059 S33: -0.5246 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 448 THROUGH 461 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.7931 35.6177 34.3788 REMARK 3 T TENSOR REMARK 3 T11: 0.7562 T22: 0.8006 REMARK 3 T33: 0.7263 T12: -0.1783 REMARK 3 T13: 0.0825 T23: -0.0375 REMARK 3 L TENSOR REMARK 3 L11: 3.6474 L22: 4.7665 REMARK 3 L33: 2.8781 L12: -3.5149 REMARK 3 L13: 1.6150 L23: -3.2942 REMARK 3 S TENSOR REMARK 3 S11: -0.4227 S12: 1.8242 S13: 0.7066 REMARK 3 S21: -0.1559 S22: -0.5911 S23: -1.3931 REMARK 3 S31: 0.4766 S32: 1.5256 S33: 0.7627 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'V' AND (RESID 301 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.3051 27.0901 22.6903 REMARK 3 T TENSOR REMARK 3 T11: 0.6723 T22: 1.1174 REMARK 3 T33: 0.7142 T12: 0.0534 REMARK 3 T13: 0.1968 T23: -0.1280 REMARK 3 L TENSOR REMARK 3 L11: 4.7691 L22: 7.0814 REMARK 3 L33: 2.2848 L12: -5.6858 REMARK 3 L13: -0.9152 L23: 0.2841 REMARK 3 S TENSOR REMARK 3 S11: -0.4651 S12: 0.9019 S13: 0.0442 REMARK 3 S21: -0.4147 S22: 0.1963 S23: -0.5857 REMARK 3 S31: 0.0907 S32: -1.8378 S33: 0.1523 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7PDT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1292117541. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.972422 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7562 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 42.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3E94 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG3350, 0.2M NA NITRATE, 0.1M REMARK 280 BISTRIS PROPANE PH6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.69600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.85850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.26300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.85850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.69600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.26300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, U, B, V REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 223 REMARK 465 PRO A 224 REMARK 465 HIS A 225 REMARK 465 MET A 226 REMARK 465 SER A 227 REMARK 465 THR A 228 REMARK 465 SER A 229 REMARK 465 SER A 230 REMARK 465 ALA A 231 REMARK 465 ASN A 232 REMARK 465 GLU A 233 REMARK 465 PRO A 249 REMARK 465 LYS A 250 REMARK 465 THR A 251 REMARK 465 GLU A 252 REMARK 465 THR A 253 REMARK 465 TYR A 254 REMARK 465 VAL A 255 REMARK 465 GLU A 256 REMARK 465 ALA A 257 REMARK 465 ASN A 258 REMARK 465 MET A 259 REMARK 465 GLY A 260 REMARK 465 LEU A 261 REMARK 465 ASN A 262 REMARK 465 PRO A 263 REMARK 465 SER A 264 REMARK 465 SER A 265 REMARK 465 PRO A 266 REMARK 465 ASN A 267 REMARK 465 ALA A 462 REMARK 465 PRO A 463 REMARK 465 HIS A 464 REMARK 465 GLN A 465 REMARK 465 ALA A 466 REMARK 465 THR A 467 REMARK 465 SER U 261 REMARK 465 SER U 262 REMARK 465 GLY B 223 REMARK 465 PRO B 224 REMARK 465 HIS B 225 REMARK 465 MET B 226 REMARK 465 SER B 227 REMARK 465 THR B 228 REMARK 465 SER B 229 REMARK 465 SER B 230 REMARK 465 ALA B 231 REMARK 465 ASN B 232 REMARK 465 GLU B 233 REMARK 465 VAL B 247 REMARK 465 GLU B 248 REMARK 465 PRO B 249 REMARK 465 LYS B 250 REMARK 465 THR B 251 REMARK 465 GLU B 252 REMARK 465 THR B 253 REMARK 465 TYR B 254 REMARK 465 VAL B 255 REMARK 465 GLU B 256 REMARK 465 ALA B 257 REMARK 465 ASN B 258 REMARK 465 MET B 259 REMARK 465 GLY B 260 REMARK 465 LEU B 261 REMARK 465 ASN B 262 REMARK 465 PRO B 263 REMARK 465 SER B 264 REMARK 465 SER B 265 REMARK 465 PRO B 266 REMARK 465 ALA B 462 REMARK 465 PRO B 463 REMARK 465 HIS B 464 REMARK 465 GLN B 465 REMARK 465 ALA B 466 REMARK 465 THR B 467 REMARK 465 LYS V 300 REMARK 465 ASP V 310 REMARK 465 SER V 311 REMARK 465 SER V 312 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 234 CG OD1 OD2 REMARK 470 GLU A 238 CG CD OE1 OE2 REMARK 470 GLU A 242 CG CD OE1 OE2 REMARK 470 LYS U 250 CG CD CE NZ REMARK 470 LYS B 326 CG CD CE NZ REMARK 470 LYS B 386 CG CD CE NZ REMARK 470 GLU B 393 CG CD OE1 OE2 REMARK 470 GLU B 415 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 247 73.36 -116.95 REMARK 500 LEU A 358 -79.66 -119.04 REMARK 500 TYR A 413 71.05 -119.43 REMARK 500 HIS U 251 78.13 -118.50 REMARK 500 GLN U 259 -78.21 -94.45 REMARK 500 LYS B 326 40.21 -80.35 REMARK 500 ASP B 327 -51.20 -121.80 REMARK 500 LEU B 358 -64.49 -128.20 REMARK 500 TYR B 413 72.32 -119.67 REMARK 500 GLU B 415 19.16 55.16 REMARK 500 LEU B 460 39.00 -98.94 REMARK 500 LYS V 302 -60.43 -99.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 603 DISTANCE = 7.35 ANGSTROMS DBREF 7PDT A 227 467 UNP P28700 RXRA_MOUSE 227 467 DBREF 7PDT U 250 262 UNP Q15596 NCOA2_HUMAN 686 698 DBREF 7PDT B 227 467 UNP P28700 RXRA_MOUSE 227 467 DBREF 7PDT V 300 312 UNP Q15596 NCOA2_HUMAN 686 698 SEQADV 7PDT GLY A 223 UNP P28700 EXPRESSION TAG SEQADV 7PDT PRO A 224 UNP P28700 EXPRESSION TAG SEQADV 7PDT HIS A 225 UNP P28700 EXPRESSION TAG SEQADV 7PDT MET A 226 UNP P28700 EXPRESSION TAG SEQADV 7PDT ALA A 315 UNP P28700 ILE 315 ENGINEERED MUTATION SEQADV 7PDT ALA A 318 UNP P28700 PHE 318 ENGINEERED MUTATION SEQADV 7PDT THR A 332 UNP P28700 ALA 332 ENGINEERED MUTATION SEQADV 7PDT GLY B 223 UNP P28700 EXPRESSION TAG SEQADV 7PDT PRO B 224 UNP P28700 EXPRESSION TAG SEQADV 7PDT HIS B 225 UNP P28700 EXPRESSION TAG SEQADV 7PDT MET B 226 UNP P28700 EXPRESSION TAG SEQADV 7PDT ALA B 315 UNP P28700 ILE 315 ENGINEERED MUTATION SEQADV 7PDT ALA B 318 UNP P28700 PHE 318 ENGINEERED MUTATION SEQADV 7PDT THR B 332 UNP P28700 ALA 332 ENGINEERED MUTATION SEQRES 1 A 245 GLY PRO HIS MET SER THR SER SER ALA ASN GLU ASP MET SEQRES 2 A 245 PRO VAL GLU LYS ILE LEU GLU ALA GLU LEU ALA VAL GLU SEQRES 3 A 245 PRO LYS THR GLU THR TYR VAL GLU ALA ASN MET GLY LEU SEQRES 4 A 245 ASN PRO SER SER PRO ASN ASP PRO VAL THR ASN ILE CYS SEQRES 5 A 245 GLN ALA ALA ASP LYS GLN LEU PHE THR LEU VAL GLU TRP SEQRES 6 A 245 ALA LYS ARG ILE PRO HIS PHE SER GLU LEU PRO LEU ASP SEQRES 7 A 245 ASP GLN VAL ILE LEU LEU ARG ALA GLY TRP ASN GLU LEU SEQRES 8 A 245 LEU ALA ALA SER ALA SER HIS ARG SER ILE ALA VAL LYS SEQRES 9 A 245 ASP GLY ILE LEU LEU THR THR GLY LEU HIS VAL HIS ARG SEQRES 10 A 245 ASN SER ALA HIS SER ALA GLY VAL GLY ALA ILE PHE ASP SEQRES 11 A 245 ARG VAL LEU THR GLU LEU VAL SER LYS MET ARG ASP MET SEQRES 12 A 245 GLN MET ASP LYS THR GLU LEU GLY CYS LEU ARG ALA ILE SEQRES 13 A 245 VAL LEU PHE ASN PRO ASP SER LYS GLY LEU SER ASN PRO SEQRES 14 A 245 ALA GLU VAL GLU ALA LEU ARG GLU LYS VAL TYR ALA SER SEQRES 15 A 245 LEU GLU ALA TYR CYS LYS HIS LYS TYR PRO GLU GLN PRO SEQRES 16 A 245 GLY ARG PHE ALA LYS LEU LEU LEU ARG LEU PRO ALA LEU SEQRES 17 A 245 ARG SER ILE GLY LEU LYS CYS LEU GLU HIS LEU PHE PHE SEQRES 18 A 245 PHE LYS LEU ILE GLY ASP THR PRO ILE ASP THR PHE LEU SEQRES 19 A 245 MET GLU MET LEU GLU ALA PRO HIS GLN ALA THR SEQRES 1 U 13 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 1 B 245 GLY PRO HIS MET SER THR SER SER ALA ASN GLU ASP MET SEQRES 2 B 245 PRO VAL GLU LYS ILE LEU GLU ALA GLU LEU ALA VAL GLU SEQRES 3 B 245 PRO LYS THR GLU THR TYR VAL GLU ALA ASN MET GLY LEU SEQRES 4 B 245 ASN PRO SER SER PRO ASN ASP PRO VAL THR ASN ILE CYS SEQRES 5 B 245 GLN ALA ALA ASP LYS GLN LEU PHE THR LEU VAL GLU TRP SEQRES 6 B 245 ALA LYS ARG ILE PRO HIS PHE SER GLU LEU PRO LEU ASP SEQRES 7 B 245 ASP GLN VAL ILE LEU LEU ARG ALA GLY TRP ASN GLU LEU SEQRES 8 B 245 LEU ALA ALA SER ALA SER HIS ARG SER ILE ALA VAL LYS SEQRES 9 B 245 ASP GLY ILE LEU LEU THR THR GLY LEU HIS VAL HIS ARG SEQRES 10 B 245 ASN SER ALA HIS SER ALA GLY VAL GLY ALA ILE PHE ASP SEQRES 11 B 245 ARG VAL LEU THR GLU LEU VAL SER LYS MET ARG ASP MET SEQRES 12 B 245 GLN MET ASP LYS THR GLU LEU GLY CYS LEU ARG ALA ILE SEQRES 13 B 245 VAL LEU PHE ASN PRO ASP SER LYS GLY LEU SER ASN PRO SEQRES 14 B 245 ALA GLU VAL GLU ALA LEU ARG GLU LYS VAL TYR ALA SER SEQRES 15 B 245 LEU GLU ALA TYR CYS LYS HIS LYS TYR PRO GLU GLN PRO SEQRES 16 B 245 GLY ARG PHE ALA LYS LEU LEU LEU ARG LEU PRO ALA LEU SEQRES 17 B 245 ARG SER ILE GLY LEU LYS CYS LEU GLU HIS LEU PHE PHE SEQRES 18 B 245 PHE LYS LEU ILE GLY ASP THR PRO ILE ASP THR PHE LEU SEQRES 19 B 245 MET GLU MET LEU GLU ALA PRO HIS GLN ALA THR SEQRES 1 V 13 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER HET BM6 A 501 28 HET BM6 B 501 28 HETNAM BM6 4-[2-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO- HETNAM 2 BM6 NAPHTHALEN-2-YL)-[1,3]DIOXOLAN-2-YL]-BENZOIC ACID HETSYN BM6 BMS649 FORMUL 5 BM6 2(C24 H27 O4 1-) FORMUL 7 HOH *7(H2 O) HELIX 1 AA1 PRO A 236 VAL A 247 1 12 HELIX 2 AA2 PRO A 269 ARG A 290 1 22 HELIX 3 AA3 PRO A 298 SER A 322 1 25 HELIX 4 AA4 ARG A 339 ALA A 345 1 7 HELIX 5 AA5 VAL A 347 LEU A 358 1 12 HELIX 6 AA6 LEU A 358 MET A 365 1 8 HELIX 7 AA7 ASP A 368 PHE A 381 1 14 HELIX 8 AA8 ASN A 390 TYR A 413 1 24 HELIX 9 AA9 GLY A 418 LEU A 425 1 8 HELIX 10 AB1 LEU A 425 GLY A 448 1 24 HELIX 11 AB2 ASP A 453 LEU A 460 1 8 HELIX 12 AB3 HIS U 251 ASP U 260 1 10 HELIX 13 AB4 PRO B 236 ALA B 246 1 11 HELIX 14 AB5 ASP B 268 ARG B 290 1 23 HELIX 15 AB6 PRO B 298 ARG B 307 1 10 HELIX 16 AB7 GLY B 309 SER B 322 1 14 HELIX 17 AB8 ARG B 339 ALA B 345 1 7 HELIX 18 AB9 VAL B 347 LEU B 358 1 12 HELIX 19 AC1 LEU B 358 MET B 365 1 8 HELIX 20 AC2 ASP B 368 PHE B 381 1 14 HELIX 21 AC3 ASN B 390 TYR B 413 1 24 HELIX 22 AC4 GLY B 418 LEU B 425 1 8 HELIX 23 AC5 ARG B 426 GLY B 448 1 23 HELIX 24 AC6 ASP B 453 MET B 459 1 7 HELIX 25 AC7 LYS V 302 LEU V 307 1 6 SHEET 1 AA1 2 GLY A 328 LEU A 330 0 SHEET 2 AA1 2 HIS A 336 HIS A 338 -1 O VAL A 337 N ILE A 329 SHEET 1 AA2 2 GLY B 328 LEU B 330 0 SHEET 2 AA2 2 HIS B 336 HIS B 338 -1 O VAL B 337 N ILE B 329 CRYST1 63.392 68.526 109.717 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015775 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014593 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009114 0.00000