HEADER ISOMERASE 10-AUG-21 7PEK TITLE CRYSTAL STRUCTURE OF TRIOSEPHOSPHATE ISOMERASE C216A MUTANT FROM TITLE 2 SCHIZOSACCHAROMYCES POMBE (SPTIM C216A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TIM,TRIOSE-PHOSPHATE ISOMERASE; COMPND 5 EC: 5.3.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: C216A MUTATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE (STRAIN 972 / ATCC SOURCE 3 24843); SOURCE 4 ORGANISM_COMMON: FISSION YEAST; SOURCE 5 ORGANISM_TAXID: 284812; SOURCE 6 STRAIN: 972 / ATCC 24843; SOURCE 7 GENE: TPI1, TPI, SPCC24B10.21; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET24A(+) KEYWDS TIM, TIM BARREL, ISOMERASE, GLYCOLYTIC ENZYME EXPDTA X-RAY DIFFRACTION AUTHOR S.ROMERO-ROMERO,G.GARZA-RAMOS REVDAT 2 31-JAN-24 7PEK 1 REMARK REVDAT 1 24-AUG-22 7PEK 0 JRNL AUTH S.ROMERO-ROMERO,G.GARZA-RAMOS JRNL TITL CRYSTAL STRUCTURE OF TRIOSEPHOSPHATE ISOMERASE FROM JRNL TITL 2 SCHIZOSACCHAROMYCES POMBE (SPTIM C216A) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR., SECT. D: V. 68 352 2012 REMARK 1 REF 2 BIOL. CRYSTALLOGR. REMARK 1 REFN ISSN 0907-4449 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 110291 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1200 - 4.3000 0.99 7329 143 0.1528 0.1643 REMARK 3 2 4.3000 - 3.4100 1.00 7282 141 0.1391 0.1657 REMARK 3 3 3.4100 - 2.9800 1.00 7245 141 0.1662 0.1939 REMARK 3 4 2.9800 - 2.7100 1.00 7228 140 0.1787 0.2070 REMARK 3 5 2.7100 - 2.5100 1.00 7264 141 0.1823 0.2291 REMARK 3 6 2.5100 - 2.3700 1.00 7174 139 0.1876 0.2507 REMARK 3 7 2.3700 - 2.2500 1.00 7265 141 0.1852 0.2125 REMARK 3 8 2.2500 - 2.1500 1.00 7195 140 0.1842 0.2078 REMARK 3 9 2.1500 - 2.0700 1.00 7260 141 0.2010 0.2949 REMARK 3 10 2.0700 - 2.0000 1.00 7199 139 0.2213 0.2597 REMARK 3 11 2.0000 - 1.9300 1.00 7212 140 0.2522 0.2975 REMARK 3 12 1.9300 - 1.8800 1.00 7207 140 0.2842 0.3421 REMARK 3 13 1.8800 - 1.8300 1.00 7177 139 0.2949 0.3050 REMARK 3 14 1.8300 - 1.7800 1.00 7215 140 0.3129 0.3595 REMARK 3 15 1.7800 - 1.7400 0.96 6939 135 0.3468 0.3453 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.241 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.749 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7584 REMARK 3 ANGLE : 1.071 10280 REMARK 3 CHIRALITY : 0.056 1185 REMARK 3 PLANARITY : 0.008 1328 REMARK 3 DIHEDRAL : 6.829 1037 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -31.9729 -15.0553 34.9495 REMARK 3 T TENSOR REMARK 3 T11: 0.2040 T22: 0.2289 REMARK 3 T33: 0.2761 T12: -0.0234 REMARK 3 T13: 0.0530 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 0.1951 L22: 0.3270 REMARK 3 L33: 1.2122 L12: 0.0393 REMARK 3 L13: 0.0204 L23: -0.3477 REMARK 3 S TENSOR REMARK 3 S11: 0.0087 S12: -0.0528 S13: -0.0173 REMARK 3 S21: 0.0022 S22: 0.0079 S23: 0.0728 REMARK 3 S31: -0.0231 S32: 0.0553 S33: -0.0112 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7PEK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1292117587. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : DCM SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110326 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 47.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.09564 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 1.24100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4FF7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M AMMONIUM SULPHATE, 0.1 M BICINE REMARK 280 PH:9.0, 11.1 MG/ML PROTEIN CONCENTRATION, PH 9.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 74.50500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.50500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.75500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 74.50500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.50500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.75500 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 74.50500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 74.50500 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 49.75500 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 74.50500 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 74.50500 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 49.75500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -99.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 MET B 1 REMARK 465 LEU B 248 REMARK 465 MET C 1 REMARK 465 MET D 1 REMARK 465 THR D 171 REMARK 465 GLY D 172 REMARK 465 LEU D 248 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 LYS A 69 CE NZ REMARK 470 GLN A 154 CG CD OE1 NE2 REMARK 470 LYS A 173 CE NZ REMARK 470 LYS A 221 CG CD CE NZ REMARK 470 LYS B 31 CG CD CE NZ REMARK 470 ASN B 33 CG OD1 ND2 REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 LYS B 70 CE NZ REMARK 470 GLU B 135 CG CD OE1 OE2 REMARK 470 GLN B 154 CG CD OE1 NE2 REMARK 470 LYS B 173 CG CD CE NZ REMARK 470 THR B 174 OG1 CG2 REMARK 470 GLU B 178 CG CD OE1 OE2 REMARK 470 GLU B 186 CD OE1 OE2 REMARK 470 LYS B 189 CE NZ REMARK 470 LYS B 217 CG CD CE NZ REMARK 470 GLU B 218 CG CD OE1 OE2 REMARK 470 LYS B 221 CG CD CE NZ REMARK 470 LYS C 31 CG CD CE NZ REMARK 470 LYS C 57 CG CD CE NZ REMARK 470 LYS C 69 CE NZ REMARK 470 LYS C 173 CE NZ REMARK 470 LYS C 189 CD CE NZ REMARK 470 HIS C 223 CG ND1 CD2 CE1 NE2 REMARK 470 LYS D 21 CG CD CE NZ REMARK 470 LYS D 31 CG CD CE NZ REMARK 470 LEU D 32 CG CD1 CD2 REMARK 470 ASN D 33 CG OD1 ND2 REMARK 470 VAL D 34 CG1 CG2 REMARK 470 LYS D 57 CG CD CE NZ REMARK 470 LYS D 70 CD CE NZ REMARK 470 GLU D 107 CG CD OE1 OE2 REMARK 470 LYS D 114 NZ REMARK 470 LEU D 131 CG CD1 CD2 REMARK 470 ASN D 137 CG OD1 ND2 REMARK 470 GLN D 154 CG CD OE1 NE2 REMARK 470 LYS D 158 CD CE NZ REMARK 470 LYS D 173 CG CD CE NZ REMARK 470 GLU D 182 CG CD OE1 OE2 REMARK 470 LYS D 189 CE NZ REMARK 470 GLU D 201 CG CD OE1 OE2 REMARK 470 LYS D 217 CG CD CE NZ REMARK 470 HIS D 223 CG ND1 CD2 CE1 NE2 REMARK 470 SER D 247 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 12 -147.15 57.49 REMARK 500 LYS B 12 -152.84 58.99 REMARK 500 ALA B 136 -5.50 -141.71 REMARK 500 LYS C 12 -152.45 57.49 REMARK 500 ALA C 136 -2.73 -150.20 REMARK 500 LYS D 12 -157.47 55.08 REMARK 500 ALA D 136 28.87 -154.69 REMARK 500 ASN D 137 18.66 -150.64 REMARK 500 ASN D 244 46.94 -103.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 643 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH D 607 DISTANCE = 6.60 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 164 OE1 REMARK 620 2 HOH C 461 O 113.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 305 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 164 OE2 REMARK 620 2 HOH C 439 O 82.3 REMARK 620 N 1 DBREF 7PEK A 1 248 UNP P07669 TPIS_SCHPO 1 249 DBREF 7PEK B 1 248 UNP P07669 TPIS_SCHPO 1 249 DBREF 7PEK C 1 248 UNP P07669 TPIS_SCHPO 1 249 DBREF 7PEK D 1 248 UNP P07669 TPIS_SCHPO 1 249 SEQADV 7PEK A UNP P07669 GLU 138 DELETION SEQADV 7PEK ALA A 216 UNP P07669 CYS 217 ENGINEERED MUTATION SEQADV 7PEK B UNP P07669 GLU 138 DELETION SEQADV 7PEK ALA B 216 UNP P07669 CYS 217 ENGINEERED MUTATION SEQADV 7PEK C UNP P07669 GLU 138 ENGINEERED MUTATION SEQADV 7PEK ALA C 216 UNP P07669 CYS 217 ENGINEERED MUTATION SEQADV 7PEK D UNP P07669 GLU 138 DELETION SEQADV 7PEK ALA D 216 UNP P07669 CYS 217 ENGINEERED MUTATION SEQRES 1 A 248 MET ALA ARG LYS PHE PHE VAL GLY GLY ASN PHE LYS MET SEQRES 2 A 248 ASN GLY SER LEU GLU SER MET LYS THR ILE ILE GLU GLY SEQRES 3 A 248 LEU ASN THR THR LYS LEU ASN VAL GLY ASP VAL GLU THR SEQRES 4 A 248 VAL ILE PHE PRO GLN ASN MET TYR LEU ILE THR THR ARG SEQRES 5 A 248 GLN GLN VAL LYS LYS ASP ILE GLY VAL GLY ALA GLN ASN SEQRES 6 A 248 VAL PHE ASP LYS LYS ASN GLY ALA TYR THR GLY GLU ASN SEQRES 7 A 248 SER ALA GLN SER LEU ILE ASP ALA GLY ILE THR TYR THR SEQRES 8 A 248 LEU THR GLY HIS SER GLU ARG ARG THR ILE PHE LYS GLU SEQRES 9 A 248 SER ASP GLU PHE VAL ALA ASP LYS THR LYS PHE ALA LEU SEQRES 10 A 248 GLU GLN GLY LEU THR VAL VAL ALA CYS ILE GLY GLU THR SEQRES 11 A 248 LEU ALA GLU ARG GLU ALA ASN THR ILE ASN VAL VAL VAL SEQRES 12 A 248 ARG GLN LEU ASN ALA ILE ALA ASP LYS VAL GLN ASN TRP SEQRES 13 A 248 SER LYS ILE VAL ILE ALA TYR GLU PRO VAL TRP ALA ILE SEQRES 14 A 248 GLY THR GLY LYS THR ALA THR PRO GLU GLN ALA GLN GLU SEQRES 15 A 248 VAL HIS ALA GLU ILE ARG LYS TRP ALA THR ASN LYS LEU SEQRES 16 A 248 GLY ALA SER VAL ALA GLU GLY LEU ARG VAL ILE TYR GLY SEQRES 17 A 248 GLY SER VAL ASN GLY GLY ASN ALA LYS GLU PHE LEU LYS SEQRES 18 A 248 PHE HIS ASP ILE ASP GLY PHE LEU VAL GLY GLY ALA SER SEQRES 19 A 248 LEU LYS PRO GLU PHE HIS ASN ILE VAL ASN VAL HIS SER SEQRES 20 A 248 LEU SEQRES 1 B 248 MET ALA ARG LYS PHE PHE VAL GLY GLY ASN PHE LYS MET SEQRES 2 B 248 ASN GLY SER LEU GLU SER MET LYS THR ILE ILE GLU GLY SEQRES 3 B 248 LEU ASN THR THR LYS LEU ASN VAL GLY ASP VAL GLU THR SEQRES 4 B 248 VAL ILE PHE PRO GLN ASN MET TYR LEU ILE THR THR ARG SEQRES 5 B 248 GLN GLN VAL LYS LYS ASP ILE GLY VAL GLY ALA GLN ASN SEQRES 6 B 248 VAL PHE ASP LYS LYS ASN GLY ALA TYR THR GLY GLU ASN SEQRES 7 B 248 SER ALA GLN SER LEU ILE ASP ALA GLY ILE THR TYR THR SEQRES 8 B 248 LEU THR GLY HIS SER GLU ARG ARG THR ILE PHE LYS GLU SEQRES 9 B 248 SER ASP GLU PHE VAL ALA ASP LYS THR LYS PHE ALA LEU SEQRES 10 B 248 GLU GLN GLY LEU THR VAL VAL ALA CYS ILE GLY GLU THR SEQRES 11 B 248 LEU ALA GLU ARG GLU ALA ASN THR ILE ASN VAL VAL VAL SEQRES 12 B 248 ARG GLN LEU ASN ALA ILE ALA ASP LYS VAL GLN ASN TRP SEQRES 13 B 248 SER LYS ILE VAL ILE ALA TYR GLU PRO VAL TRP ALA ILE SEQRES 14 B 248 GLY THR GLY LYS THR ALA THR PRO GLU GLN ALA GLN GLU SEQRES 15 B 248 VAL HIS ALA GLU ILE ARG LYS TRP ALA THR ASN LYS LEU SEQRES 16 B 248 GLY ALA SER VAL ALA GLU GLY LEU ARG VAL ILE TYR GLY SEQRES 17 B 248 GLY SER VAL ASN GLY GLY ASN ALA LYS GLU PHE LEU LYS SEQRES 18 B 248 PHE HIS ASP ILE ASP GLY PHE LEU VAL GLY GLY ALA SER SEQRES 19 B 248 LEU LYS PRO GLU PHE HIS ASN ILE VAL ASN VAL HIS SER SEQRES 20 B 248 LEU SEQRES 1 C 248 MET ALA ARG LYS PHE PHE VAL GLY GLY ASN PHE LYS MET SEQRES 2 C 248 ASN GLY SER LEU GLU SER MET LYS THR ILE ILE GLU GLY SEQRES 3 C 248 LEU ASN THR THR LYS LEU ASN VAL GLY ASP VAL GLU THR SEQRES 4 C 248 VAL ILE PHE PRO GLN ASN MET TYR LEU ILE THR THR ARG SEQRES 5 C 248 GLN GLN VAL LYS LYS ASP ILE GLY VAL GLY ALA GLN ASN SEQRES 6 C 248 VAL PHE ASP LYS LYS ASN GLY ALA TYR THR GLY GLU ASN SEQRES 7 C 248 SER ALA GLN SER LEU ILE ASP ALA GLY ILE THR TYR THR SEQRES 8 C 248 LEU THR GLY HIS SER GLU ARG ARG THR ILE PHE LYS GLU SEQRES 9 C 248 SER ASP GLU PHE VAL ALA ASP LYS THR LYS PHE ALA LEU SEQRES 10 C 248 GLU GLN GLY LEU THR VAL VAL ALA CYS ILE GLY GLU THR SEQRES 11 C 248 LEU ALA GLU ARG GLU ALA ASN THR ILE ASN VAL VAL VAL SEQRES 12 C 248 ARG GLN LEU ASN ALA ILE ALA ASP LYS VAL GLN ASN TRP SEQRES 13 C 248 SER LYS ILE VAL ILE ALA TYR GLU PRO VAL TRP ALA ILE SEQRES 14 C 248 GLY THR GLY LYS THR ALA THR PRO GLU GLN ALA GLN GLU SEQRES 15 C 248 VAL HIS ALA GLU ILE ARG LYS TRP ALA THR ASN LYS LEU SEQRES 16 C 248 GLY ALA SER VAL ALA GLU GLY LEU ARG VAL ILE TYR GLY SEQRES 17 C 248 GLY SER VAL ASN GLY GLY ASN ALA LYS GLU PHE LEU LYS SEQRES 18 C 248 PHE HIS ASP ILE ASP GLY PHE LEU VAL GLY GLY ALA SER SEQRES 19 C 248 LEU LYS PRO GLU PHE HIS ASN ILE VAL ASN VAL HIS SER SEQRES 20 C 248 LEU SEQRES 1 D 248 MET ALA ARG LYS PHE PHE VAL GLY GLY ASN PHE LYS MET SEQRES 2 D 248 ASN GLY SER LEU GLU SER MET LYS THR ILE ILE GLU GLY SEQRES 3 D 248 LEU ASN THR THR LYS LEU ASN VAL GLY ASP VAL GLU THR SEQRES 4 D 248 VAL ILE PHE PRO GLN ASN MET TYR LEU ILE THR THR ARG SEQRES 5 D 248 GLN GLN VAL LYS LYS ASP ILE GLY VAL GLY ALA GLN ASN SEQRES 6 D 248 VAL PHE ASP LYS LYS ASN GLY ALA TYR THR GLY GLU ASN SEQRES 7 D 248 SER ALA GLN SER LEU ILE ASP ALA GLY ILE THR TYR THR SEQRES 8 D 248 LEU THR GLY HIS SER GLU ARG ARG THR ILE PHE LYS GLU SEQRES 9 D 248 SER ASP GLU PHE VAL ALA ASP LYS THR LYS PHE ALA LEU SEQRES 10 D 248 GLU GLN GLY LEU THR VAL VAL ALA CYS ILE GLY GLU THR SEQRES 11 D 248 LEU ALA GLU ARG GLU ALA ASN THR ILE ASN VAL VAL VAL SEQRES 12 D 248 ARG GLN LEU ASN ALA ILE ALA ASP LYS VAL GLN ASN TRP SEQRES 13 D 248 SER LYS ILE VAL ILE ALA TYR GLU PRO VAL TRP ALA ILE SEQRES 14 D 248 GLY THR GLY LYS THR ALA THR PRO GLU GLN ALA GLN GLU SEQRES 15 D 248 VAL HIS ALA GLU ILE ARG LYS TRP ALA THR ASN LYS LEU SEQRES 16 D 248 GLY ALA SER VAL ALA GLU GLY LEU ARG VAL ILE TYR GLY SEQRES 17 D 248 GLY SER VAL ASN GLY GLY ASN ALA LYS GLU PHE LEU LYS SEQRES 18 D 248 PHE HIS ASP ILE ASP GLY PHE LEU VAL GLY GLY ALA SER SEQRES 19 D 248 LEU LYS PRO GLU PHE HIS ASN ILE VAL ASN VAL HIS SER SEQRES 20 D 248 LEU HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 B 301 5 HET SO4 B 302 5 HET GOL B 303 6 HET GOL B 304 6 HET GOL B 305 6 HET SO4 C 301 5 HET SO4 C 302 5 HET PO4 C 303 5 HET NA C 304 1 HET NA C 305 1 HET SO4 D 301 5 HET SO4 D 302 5 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 SO4 8(O4 S 2-) FORMUL 9 GOL 3(C3 H8 O3) FORMUL 14 PO4 O4 P 3- FORMUL 15 NA 2(NA 1+) FORMUL 19 HOH *880(H2 O) HELIX 1 AA1 SER A 16 THR A 29 1 14 HELIX 2 AA2 GLN A 44 MET A 46 5 3 HELIX 3 AA3 TYR A 47 VAL A 55 1 9 HELIX 4 AA4 SER A 79 ALA A 86 1 8 HELIX 5 AA5 HIS A 95 PHE A 102 1 8 HELIX 6 AA6 SER A 105 GLY A 120 1 16 HELIX 7 AA7 ALA A 132 ALA A 136 5 5 HELIX 8 AA8 ASN A 137 VAL A 153 1 17 HELIX 9 AA9 PRO A 165 ILE A 169 5 5 HELIX 10 AB1 THR A 176 GLY A 196 1 21 HELIX 11 AB2 GLY A 196 LEU A 203 1 8 HELIX 12 AB3 ASN A 215 LEU A 220 1 6 HELIX 13 AB4 GLY A 231 PRO A 237 5 7 HELIX 14 AB5 GLU A 238 VAL A 245 1 8 HELIX 15 AB6 HIS A 246 LEU A 248 5 3 HELIX 16 AB7 SER B 16 THR B 30 1 15 HELIX 17 AB8 GLN B 44 MET B 46 5 3 HELIX 18 AB9 TYR B 47 VAL B 55 1 9 HELIX 19 AC1 SER B 79 ALA B 86 1 8 HELIX 20 AC2 HIS B 95 PHE B 102 1 8 HELIX 21 AC3 SER B 105 GLN B 119 1 15 HELIX 22 AC4 THR B 130 GLU B 135 1 6 HELIX 23 AC5 ASN B 137 VAL B 153 1 17 HELIX 24 AC6 PRO B 165 ILE B 169 5 5 HELIX 25 AC7 THR B 176 GLY B 196 1 21 HELIX 26 AC8 GLY B 196 LEU B 203 1 8 HELIX 27 AC9 ASN B 215 LYS B 221 1 7 HELIX 28 AD1 GLY B 231 LYS B 236 5 6 HELIX 29 AD2 PRO B 237 ASN B 244 1 8 HELIX 30 AD3 SER C 16 THR C 29 1 14 HELIX 31 AD4 GLN C 44 MET C 46 5 3 HELIX 32 AD5 TYR C 47 VAL C 55 1 9 HELIX 33 AD6 SER C 79 ALA C 86 1 8 HELIX 34 AD7 HIS C 95 PHE C 102 1 8 HELIX 35 AD8 SER C 105 GLN C 119 1 15 HELIX 36 AD9 ALA C 132 ALA C 136 5 5 HELIX 37 AE1 ASN C 137 VAL C 153 1 17 HELIX 38 AE2 PRO C 165 ILE C 169 5 5 HELIX 39 AE3 THR C 176 LEU C 195 1 20 HELIX 40 AE4 GLY C 196 LEU C 203 1 8 HELIX 41 AE5 ASN C 215 LEU C 220 1 6 HELIX 42 AE6 GLY C 231 PRO C 237 5 7 HELIX 43 AE7 GLU C 238 HIS C 246 1 9 HELIX 44 AE8 SER D 16 THR D 30 1 15 HELIX 45 AE9 GLN D 44 MET D 46 5 3 HELIX 46 AF1 TYR D 47 VAL D 55 1 9 HELIX 47 AF2 SER D 79 ALA D 86 1 8 HELIX 48 AF3 HIS D 95 PHE D 102 1 8 HELIX 49 AF4 SER D 105 GLN D 119 1 15 HELIX 50 AF5 THR D 130 GLU D 135 1 6 HELIX 51 AF6 ASN D 137 VAL D 153 1 17 HELIX 52 AF7 PRO D 165 ILE D 169 5 5 HELIX 53 AF8 THR D 176 GLY D 196 1 21 HELIX 54 AF9 GLY D 196 LEU D 203 1 8 HELIX 55 AG1 ASN D 215 PHE D 222 5 8 HELIX 56 AG2 GLY D 231 PRO D 237 5 7 HELIX 57 AG3 GLU D 238 ASN D 244 1 7 SHEET 1 AA1 9 PHE A 5 ASN A 10 0 SHEET 2 AA1 9 VAL A 37 PHE A 42 1 O GLU A 38 N PHE A 5 SHEET 3 AA1 9 GLY A 60 ALA A 63 1 O GLY A 60 N THR A 39 SHEET 4 AA1 9 TYR A 90 THR A 93 1 O LEU A 92 N ALA A 63 SHEET 5 AA1 9 THR A 122 ILE A 127 1 O CYS A 126 N THR A 93 SHEET 6 AA1 9 ILE A 159 TYR A 163 1 O ALA A 162 N ILE A 127 SHEET 7 AA1 9 ARG A 204 GLY A 208 1 O ILE A 206 N ILE A 161 SHEET 8 AA1 9 GLY A 227 VAL A 230 1 O GLY A 227 N TYR A 207 SHEET 9 AA1 9 PHE A 5 ASN A 10 1 N ASN A 10 O VAL A 230 SHEET 1 AA2 9 PHE B 6 ASN B 10 0 SHEET 2 AA2 9 GLU B 38 PHE B 42 1 O PHE B 42 N GLY B 9 SHEET 3 AA2 9 ILE B 59 ALA B 63 1 O GLY B 60 N THR B 39 SHEET 4 AA2 9 TYR B 90 THR B 93 1 O LEU B 92 N ALA B 63 SHEET 5 AA2 9 THR B 122 ILE B 127 1 O CYS B 126 N THR B 93 SHEET 6 AA2 9 ILE B 159 TYR B 163 1 O ALA B 162 N ILE B 127 SHEET 7 AA2 9 VAL B 205 TYR B 207 1 O ILE B 206 N ILE B 161 SHEET 8 AA2 9 GLY B 227 VAL B 230 1 O GLY B 227 N TYR B 207 SHEET 9 AA2 9 PHE B 6 ASN B 10 1 N GLY B 8 O VAL B 230 SHEET 1 AA3 9 PHE C 5 ASN C 10 0 SHEET 2 AA3 9 VAL C 37 PHE C 42 1 O GLU C 38 N PHE C 5 SHEET 3 AA3 9 GLY C 60 ALA C 63 1 O GLY C 60 N THR C 39 SHEET 4 AA3 9 TYR C 90 THR C 93 1 O LEU C 92 N ALA C 63 SHEET 5 AA3 9 THR C 122 ILE C 127 1 O CYS C 126 N THR C 93 SHEET 6 AA3 9 ILE C 159 TYR C 163 1 O VAL C 160 N VAL C 123 SHEET 7 AA3 9 ARG C 204 GLY C 208 1 O ILE C 206 N ILE C 161 SHEET 8 AA3 9 GLY C 227 VAL C 230 1 O GLY C 227 N TYR C 207 SHEET 9 AA3 9 PHE C 5 ASN C 10 1 N GLY C 8 O VAL C 230 SHEET 1 AA4 9 PHE D 5 ASN D 10 0 SHEET 2 AA4 9 VAL D 37 PHE D 42 1 O PHE D 42 N GLY D 9 SHEET 3 AA4 9 GLY D 60 ALA D 63 1 O GLY D 60 N THR D 39 SHEET 4 AA4 9 TYR D 90 THR D 93 1 O LEU D 92 N ALA D 63 SHEET 5 AA4 9 THR D 122 ILE D 127 1 O CYS D 126 N THR D 93 SHEET 6 AA4 9 ILE D 159 TYR D 163 1 O VAL D 160 N VAL D 123 SHEET 7 AA4 9 VAL D 205 TYR D 207 1 O ILE D 206 N ILE D 161 SHEET 8 AA4 9 GLY D 227 VAL D 230 1 O GLY D 227 N TYR D 207 SHEET 9 AA4 9 PHE D 5 ASN D 10 1 N GLY D 8 O VAL D 230 LINK OE1 GLU C 164 NA NA C 304 1555 1555 2.76 LINK OE2 GLU C 164 NA NA C 305 1555 1555 2.94 LINK NA NA C 304 O HOH C 461 1555 1555 2.52 LINK NA NA C 305 O HOH C 439 1555 1555 2.86 CRYST1 149.010 149.010 99.510 90.00 90.00 90.00 I 4 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006711 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006711 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010049 0.00000