HEADER DNA BINDING PROTEIN 11-AUG-21 7PF4 TITLE NUCLEOSOME 3 OF THE 4X187 NUCLEOSOME ARRAY CONTAINING H1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H3.2; COMPND 3 CHAIN: K, O; COMPND 4 SYNONYM: HISTONE H3/M,HISTONE H3/O; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HISTONE H4; COMPND 8 CHAIN: L, P; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: HISTONE H2A TYPE 1-B/E; COMPND 12 CHAIN: M, Q; COMPND 13 SYNONYM: HISTONE H2A.2,HISTONE H2A/A,HISTONE H2A/M; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: HISTONE H2B TYPE 1-K; COMPND 17 CHAIN: N, R; COMPND 18 SYNONYM: H2B K,HIRA-INTERACTING PROTEIN 1; COMPND 19 ENGINEERED: YES; COMPND 20 MOL_ID: 5; COMPND 21 MOLECULE: DNA (167-MER); COMPND 22 CHAIN: J; COMPND 23 ENGINEERED: YES; COMPND 24 MOL_ID: 6; COMPND 25 MOLECULE: DNA (167-MER); COMPND 26 CHAIN: I; COMPND 27 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HIST2H3A, HIST2H3C, H3F2, H3FM, HIST2H3D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: HIST1H4A, H4/A, H4FA, HIST1H4B, H4/I, H4FI, HIST1H4C, H4/G, SOURCE 13 H4FG, HIST1H4D, H4/B, H4FB, HIST1H4E, H4/J, H4FJ, HIST1H4F, H4/C, SOURCE 14 H4FC, HIST1H4H, H4/H, H4FH, HIST1H4I, H4/M, H4FM, HIST1H4J, H4/E, SOURCE 15 H4FE, HIST1H4K, H4/D, H4FD, HIST1H4L, H4/K, H4FK, HIST2H4A, H4/N, SOURCE 16 H4F2, H4FN, HIST2H4, HIST2H4B, H4/O, H4FO, HIST4H4; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_COMMON: HUMAN; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 GENE: H2AC4, H2AFM, HIST1H2AB, H2AC8, H2AFA, HIST1H2AE; SOURCE 24 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 26 MOL_ID: 4; SOURCE 27 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 28 ORGANISM_COMMON: HUMAN; SOURCE 29 ORGANISM_TAXID: 9606; SOURCE 30 GENE: HIST1H2BK, H2BFT, HIRIP1; SOURCE 31 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 32 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 33 MOL_ID: 5; SOURCE 34 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 35 ORGANISM_TAXID: 32630; SOURCE 36 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 37 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 38 MOL_ID: 6; SOURCE 39 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 40 ORGANISM_TAXID: 32630; SOURCE 41 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 42 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CHROMATIN, NUCLEOSOMES, LINKER HISTONE, DNA BINDING PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR M.DOMBROWSKI,P.CRAMER REVDAT 2 17-JUL-24 7PF4 1 REMARK REVDAT 1 03-AUG-22 7PF4 0 JRNL AUTH M.DOMBROWSKI,M.ENGEHOLM,C.DIENEMANN,S.DODONOVA,P.CRAMER JRNL TITL HISTONE H1 BINDING TO NUCLEOSOME ARRAYS DEPENDS ON LINKER JRNL TITL 2 DNA LENGTH AND TRAJECTORY. JRNL REF NAT.STRUCT.MOL.BIOL. V. 29 493 2022 JRNL REFN ESSN 1545-9985 JRNL PMID 35581345 JRNL DOI 10.1038/S41594-022-00768-W REMARK 2 REMARK 2 RESOLUTION. 4.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 7K5Y REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.000 REMARK 3 NUMBER OF PARTICLES : 110706 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7PF4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1292117367. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : NUCLEOSOME 3 FROM 4X187 REMARK 245 NUCLEOSOME ARRAY; HISTONES; DNA REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.10 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: K, L, M, N, O, P, Q, R, J, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET K 0 REMARK 465 ALA K 1 REMARK 465 ARG K 2 REMARK 465 THR K 3 REMARK 465 LYS K 4 REMARK 465 GLN K 5 REMARK 465 THR K 6 REMARK 465 ALA K 7 REMARK 465 ARG K 8 REMARK 465 LYS K 9 REMARK 465 SER K 10 REMARK 465 THR K 11 REMARK 465 GLY K 12 REMARK 465 GLY K 13 REMARK 465 LYS K 14 REMARK 465 ALA K 15 REMARK 465 PRO K 16 REMARK 465 ARG K 17 REMARK 465 LYS K 18 REMARK 465 GLN K 19 REMARK 465 LEU K 20 REMARK 465 ALA K 21 REMARK 465 THR K 22 REMARK 465 LYS K 23 REMARK 465 ALA K 24 REMARK 465 ALA K 25 REMARK 465 ARG K 26 REMARK 465 LYS K 27 REMARK 465 SER K 28 REMARK 465 ALA K 29 REMARK 465 PRO K 30 REMARK 465 ALA K 31 REMARK 465 THR K 32 REMARK 465 GLY K 33 REMARK 465 GLY K 34 REMARK 465 VAL K 35 REMARK 465 LYS K 36 REMARK 465 ARG K 134 REMARK 465 ALA K 135 REMARK 465 MET L 0 REMARK 465 SER L 1 REMARK 465 GLY L 2 REMARK 465 ARG L 3 REMARK 465 GLY L 4 REMARK 465 LYS L 5 REMARK 465 GLY L 6 REMARK 465 GLY L 7 REMARK 465 LYS L 8 REMARK 465 GLY L 9 REMARK 465 LEU L 10 REMARK 465 GLY L 11 REMARK 465 LYS L 12 REMARK 465 GLY L 13 REMARK 465 GLY L 14 REMARK 465 ALA L 15 REMARK 465 LYS L 16 REMARK 465 ARG L 17 REMARK 465 HIS L 18 REMARK 465 ARG L 19 REMARK 465 HIS M -17 REMARK 465 HIS M -16 REMARK 465 HIS M -15 REMARK 465 HIS M -14 REMARK 465 HIS M -13 REMARK 465 HIS M -12 REMARK 465 GLU M -11 REMARK 465 ASN M -10 REMARK 465 LEU M -9 REMARK 465 TYR M -8 REMARK 465 PHE M -7 REMARK 465 GLN M -6 REMARK 465 SER M -5 REMARK 465 ASN M -4 REMARK 465 ALA M -3 REMARK 465 PRO M -2 REMARK 465 TRP M -1 REMARK 465 MET M 0 REMARK 465 SER M 1 REMARK 465 GLY M 2 REMARK 465 ARG M 3 REMARK 465 GLY M 4 REMARK 465 LYS M 5 REMARK 465 GLN M 6 REMARK 465 GLY M 7 REMARK 465 GLY M 8 REMARK 465 LYS M 9 REMARK 465 LYS M 119 REMARK 465 THR M 120 REMARK 465 GLU M 121 REMARK 465 SER M 122 REMARK 465 HIS M 123 REMARK 465 HIS M 124 REMARK 465 LYS M 125 REMARK 465 ALA M 126 REMARK 465 LYS M 127 REMARK 465 GLY M 128 REMARK 465 LYS M 129 REMARK 465 MET N 0 REMARK 465 PRO N 1 REMARK 465 GLU N 2 REMARK 465 PRO N 3 REMARK 465 ALA N 4 REMARK 465 LYS N 5 REMARK 465 SER N 6 REMARK 465 ALA N 7 REMARK 465 PRO N 8 REMARK 465 ALA N 9 REMARK 465 PRO N 10 REMARK 465 LYS N 11 REMARK 465 LYS N 12 REMARK 465 GLY N 13 REMARK 465 SER N 14 REMARK 465 LYS N 15 REMARK 465 LYS N 16 REMARK 465 ALA N 17 REMARK 465 VAL N 18 REMARK 465 THR N 19 REMARK 465 LYS N 20 REMARK 465 ALA N 21 REMARK 465 GLN N 22 REMARK 465 LYS N 23 REMARK 465 LYS N 24 REMARK 465 ASP N 25 REMARK 465 GLY N 26 REMARK 465 LYS N 27 REMARK 465 LYS N 28 REMARK 465 ARG N 29 REMARK 465 LYS N 125 REMARK 465 MET O 0 REMARK 465 ALA O 1 REMARK 465 ARG O 2 REMARK 465 THR O 3 REMARK 465 LYS O 4 REMARK 465 GLN O 5 REMARK 465 THR O 6 REMARK 465 ALA O 7 REMARK 465 ARG O 8 REMARK 465 LYS O 9 REMARK 465 SER O 10 REMARK 465 THR O 11 REMARK 465 GLY O 12 REMARK 465 GLY O 13 REMARK 465 LYS O 14 REMARK 465 ALA O 15 REMARK 465 PRO O 16 REMARK 465 ARG O 17 REMARK 465 LYS O 18 REMARK 465 GLN O 19 REMARK 465 LEU O 20 REMARK 465 ALA O 21 REMARK 465 THR O 22 REMARK 465 LYS O 23 REMARK 465 ALA O 24 REMARK 465 ALA O 25 REMARK 465 ARG O 26 REMARK 465 LYS O 27 REMARK 465 SER O 28 REMARK 465 ALA O 29 REMARK 465 PRO O 30 REMARK 465 ALA O 31 REMARK 465 THR O 32 REMARK 465 GLY O 33 REMARK 465 GLY O 34 REMARK 465 VAL O 35 REMARK 465 LYS O 36 REMARK 465 ARG O 134 REMARK 465 ALA O 135 REMARK 465 MET P 0 REMARK 465 SER P 1 REMARK 465 GLY P 2 REMARK 465 ARG P 3 REMARK 465 GLY P 4 REMARK 465 LYS P 5 REMARK 465 GLY P 6 REMARK 465 GLY P 7 REMARK 465 LYS P 8 REMARK 465 GLY P 9 REMARK 465 LEU P 10 REMARK 465 GLY P 11 REMARK 465 LYS P 12 REMARK 465 GLY P 13 REMARK 465 GLY P 14 REMARK 465 ALA P 15 REMARK 465 LYS P 16 REMARK 465 ARG P 17 REMARK 465 HIS P 18 REMARK 465 ARG P 19 REMARK 465 HIS Q -17 REMARK 465 HIS Q -16 REMARK 465 HIS Q -15 REMARK 465 HIS Q -14 REMARK 465 HIS Q -13 REMARK 465 HIS Q -12 REMARK 465 GLU Q -11 REMARK 465 ASN Q -10 REMARK 465 LEU Q -9 REMARK 465 TYR Q -8 REMARK 465 PHE Q -7 REMARK 465 GLN Q -6 REMARK 465 SER Q -5 REMARK 465 ASN Q -4 REMARK 465 ALA Q -3 REMARK 465 PRO Q -2 REMARK 465 TRP Q -1 REMARK 465 MET Q 0 REMARK 465 SER Q 1 REMARK 465 GLY Q 2 REMARK 465 ARG Q 3 REMARK 465 GLY Q 4 REMARK 465 LYS Q 5 REMARK 465 GLN Q 6 REMARK 465 GLY Q 7 REMARK 465 GLY Q 8 REMARK 465 LYS Q 9 REMARK 465 LYS Q 119 REMARK 465 THR Q 120 REMARK 465 GLU Q 121 REMARK 465 SER Q 122 REMARK 465 HIS Q 123 REMARK 465 HIS Q 124 REMARK 465 LYS Q 125 REMARK 465 ALA Q 126 REMARK 465 LYS Q 127 REMARK 465 GLY Q 128 REMARK 465 LYS Q 129 REMARK 465 MET R 0 REMARK 465 PRO R 1 REMARK 465 GLU R 2 REMARK 465 PRO R 3 REMARK 465 ALA R 4 REMARK 465 LYS R 5 REMARK 465 SER R 6 REMARK 465 ALA R 7 REMARK 465 PRO R 8 REMARK 465 ALA R 9 REMARK 465 PRO R 10 REMARK 465 LYS R 11 REMARK 465 LYS R 12 REMARK 465 GLY R 13 REMARK 465 SER R 14 REMARK 465 LYS R 15 REMARK 465 LYS R 16 REMARK 465 ALA R 17 REMARK 465 VAL R 18 REMARK 465 THR R 19 REMARK 465 LYS R 20 REMARK 465 ALA R 21 REMARK 465 GLN R 22 REMARK 465 LYS R 23 REMARK 465 LYS R 24 REMARK 465 ASP R 25 REMARK 465 GLY R 26 REMARK 465 LYS R 27 REMARK 465 LYS R 28 REMARK 465 ARG R 29 REMARK 465 LYS R 125 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU K 97 CA - CB - CG ANGL. DEV. = 13.3 DEGREES REMARK 500 DT J 216 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG J 244 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG J 245 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC J 279 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG J 308 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC J 318 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG J 319 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG J 354 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC I 456 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC I 466 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC I 473 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG I 488 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC I 503 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DT I 506 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT I 539 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG L 23 -61.19 -106.70 REMARK 500 TYR N 37 45.89 -105.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG L 23 ASP L 24 -149.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-13367 RELATED DB: EMDB REMARK 900 4X187 NUCLEOSOME 3 DBREF 7PF4 K 0 135 UNP Q71DI3 H32_HUMAN 1 136 DBREF 7PF4 L 0 102 UNP P62805 H4_HUMAN 1 103 DBREF 7PF4 M 0 129 UNP P04908 H2A1B_HUMAN 1 130 DBREF 7PF4 N 0 125 UNP O60814 H2B1K_HUMAN 1 126 DBREF 7PF4 O 0 135 UNP Q71DI3 H32_HUMAN 1 136 DBREF 7PF4 P 0 102 UNP P62805 H4_HUMAN 1 103 DBREF 7PF4 Q 0 129 UNP P04908 H2A1B_HUMAN 1 130 DBREF 7PF4 R 0 125 UNP O60814 H2B1K_HUMAN 1 126 DBREF 7PF4 J 198 364 PDB 7PF4 7PF4 198 364 DBREF 7PF4 I 385 551 PDB 7PF4 7PF4 385 551 SEQADV 7PF4 ALA K 110 UNP Q71DI3 CYS 111 ENGINEERED MUTATION SEQADV 7PF4 HIS M -17 UNP P04908 EXPRESSION TAG SEQADV 7PF4 HIS M -16 UNP P04908 EXPRESSION TAG SEQADV 7PF4 HIS M -15 UNP P04908 EXPRESSION TAG SEQADV 7PF4 HIS M -14 UNP P04908 EXPRESSION TAG SEQADV 7PF4 HIS M -13 UNP P04908 EXPRESSION TAG SEQADV 7PF4 HIS M -12 UNP P04908 EXPRESSION TAG SEQADV 7PF4 GLU M -11 UNP P04908 EXPRESSION TAG SEQADV 7PF4 ASN M -10 UNP P04908 EXPRESSION TAG SEQADV 7PF4 LEU M -9 UNP P04908 EXPRESSION TAG SEQADV 7PF4 TYR M -8 UNP P04908 EXPRESSION TAG SEQADV 7PF4 PHE M -7 UNP P04908 EXPRESSION TAG SEQADV 7PF4 GLN M -6 UNP P04908 EXPRESSION TAG SEQADV 7PF4 SER M -5 UNP P04908 EXPRESSION TAG SEQADV 7PF4 ASN M -4 UNP P04908 EXPRESSION TAG SEQADV 7PF4 ALA M -3 UNP P04908 EXPRESSION TAG SEQADV 7PF4 PRO M -2 UNP P04908 EXPRESSION TAG SEQADV 7PF4 TRP M -1 UNP P04908 EXPRESSION TAG SEQADV 7PF4 ALA O 110 UNP Q71DI3 CYS 111 ENGINEERED MUTATION SEQADV 7PF4 HIS Q -17 UNP P04908 EXPRESSION TAG SEQADV 7PF4 HIS Q -16 UNP P04908 EXPRESSION TAG SEQADV 7PF4 HIS Q -15 UNP P04908 EXPRESSION TAG SEQADV 7PF4 HIS Q -14 UNP P04908 EXPRESSION TAG SEQADV 7PF4 HIS Q -13 UNP P04908 EXPRESSION TAG SEQADV 7PF4 HIS Q -12 UNP P04908 EXPRESSION TAG SEQADV 7PF4 GLU Q -11 UNP P04908 EXPRESSION TAG SEQADV 7PF4 ASN Q -10 UNP P04908 EXPRESSION TAG SEQADV 7PF4 LEU Q -9 UNP P04908 EXPRESSION TAG SEQADV 7PF4 TYR Q -8 UNP P04908 EXPRESSION TAG SEQADV 7PF4 PHE Q -7 UNP P04908 EXPRESSION TAG SEQADV 7PF4 GLN Q -6 UNP P04908 EXPRESSION TAG SEQADV 7PF4 SER Q -5 UNP P04908 EXPRESSION TAG SEQADV 7PF4 ASN Q -4 UNP P04908 EXPRESSION TAG SEQADV 7PF4 ALA Q -3 UNP P04908 EXPRESSION TAG SEQADV 7PF4 PRO Q -2 UNP P04908 EXPRESSION TAG SEQADV 7PF4 TRP Q -1 UNP P04908 EXPRESSION TAG SEQRES 1 K 136 MET ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY SEQRES 2 K 136 GLY LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA SEQRES 3 K 136 ARG LYS SER ALA PRO ALA THR GLY GLY VAL LYS LYS PRO SEQRES 4 K 136 HIS ARG TYR ARG PRO GLY THR VAL ALA LEU ARG GLU ILE SEQRES 5 K 136 ARG ARG TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS SEQRES 6 K 136 LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP SEQRES 7 K 136 PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL MET SEQRES 8 K 136 ALA LEU GLN GLU ALA SER GLU ALA TYR LEU VAL GLY LEU SEQRES 9 K 136 PHE GLU ASP THR ASN LEU ALA ALA ILE HIS ALA LYS ARG SEQRES 10 K 136 VAL THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG SEQRES 11 K 136 ILE ARG GLY GLU ARG ALA SEQRES 1 L 103 MET SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS SEQRES 2 L 103 GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN SEQRES 3 L 103 ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA SEQRES 4 L 103 ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR SEQRES 5 L 103 GLU GLU THR ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN SEQRES 6 L 103 VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA LYS SEQRES 7 L 103 ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU SEQRES 8 L 103 LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 M 147 HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SER SEQRES 2 M 147 ASN ALA PRO TRP MET SER GLY ARG GLY LYS GLN GLY GLY SEQRES 3 M 147 LYS ALA ARG ALA LYS ALA LYS THR ARG SER SER ARG ALA SEQRES 4 M 147 GLY LEU GLN PHE PRO VAL GLY ARG VAL HIS ARG LEU LEU SEQRES 5 M 147 ARG LYS GLY ASN TYR SER GLU ARG VAL GLY ALA GLY ALA SEQRES 6 M 147 PRO VAL TYR LEU ALA ALA VAL LEU GLU TYR LEU THR ALA SEQRES 7 M 147 GLU ILE LEU GLU LEU ALA GLY ASN ALA ALA ARG ASP ASN SEQRES 8 M 147 LYS LYS THR ARG ILE ILE PRO ARG HIS LEU GLN LEU ALA SEQRES 9 M 147 ILE ARG ASN ASP GLU GLU LEU ASN LYS LEU LEU GLY ARG SEQRES 10 M 147 VAL THR ILE ALA GLN GLY GLY VAL LEU PRO ASN ILE GLN SEQRES 11 M 147 ALA VAL LEU LEU PRO LYS LYS THR GLU SER HIS HIS LYS SEQRES 12 M 147 ALA LYS GLY LYS SEQRES 1 N 126 MET PRO GLU PRO ALA LYS SER ALA PRO ALA PRO LYS LYS SEQRES 2 N 126 GLY SER LYS LYS ALA VAL THR LYS ALA GLN LYS LYS ASP SEQRES 3 N 126 GLY LYS LYS ARG LYS ARG SER ARG LYS GLU SER TYR SER SEQRES 4 N 126 VAL TYR VAL TYR LYS VAL LEU LYS GLN VAL HIS PRO ASP SEQRES 5 N 126 THR GLY ILE SER SER LYS ALA MET GLY ILE MET ASN SER SEQRES 6 N 126 PHE VAL ASN ASP ILE PHE GLU ARG ILE ALA GLY GLU ALA SEQRES 7 N 126 SER ARG LEU ALA HIS TYR ASN LYS ARG SER THR ILE THR SEQRES 8 N 126 SER ARG GLU ILE GLN THR ALA VAL ARG LEU LEU LEU PRO SEQRES 9 N 126 GLY GLU LEU ALA LYS HIS ALA VAL SER GLU GLY THR LYS SEQRES 10 N 126 ALA VAL THR LYS TYR THR SER ALA LYS SEQRES 1 O 136 MET ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY SEQRES 2 O 136 GLY LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA SEQRES 3 O 136 ARG LYS SER ALA PRO ALA THR GLY GLY VAL LYS LYS PRO SEQRES 4 O 136 HIS ARG TYR ARG PRO GLY THR VAL ALA LEU ARG GLU ILE SEQRES 5 O 136 ARG ARG TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS SEQRES 6 O 136 LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP SEQRES 7 O 136 PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL MET SEQRES 8 O 136 ALA LEU GLN GLU ALA SER GLU ALA TYR LEU VAL GLY LEU SEQRES 9 O 136 PHE GLU ASP THR ASN LEU ALA ALA ILE HIS ALA LYS ARG SEQRES 10 O 136 VAL THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG SEQRES 11 O 136 ILE ARG GLY GLU ARG ALA SEQRES 1 P 103 MET SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS SEQRES 2 P 103 GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN SEQRES 3 P 103 ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA SEQRES 4 P 103 ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR SEQRES 5 P 103 GLU GLU THR ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN SEQRES 6 P 103 VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA LYS SEQRES 7 P 103 ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU SEQRES 8 P 103 LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 Q 147 HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SER SEQRES 2 Q 147 ASN ALA PRO TRP MET SER GLY ARG GLY LYS GLN GLY GLY SEQRES 3 Q 147 LYS ALA ARG ALA LYS ALA LYS THR ARG SER SER ARG ALA SEQRES 4 Q 147 GLY LEU GLN PHE PRO VAL GLY ARG VAL HIS ARG LEU LEU SEQRES 5 Q 147 ARG LYS GLY ASN TYR SER GLU ARG VAL GLY ALA GLY ALA SEQRES 6 Q 147 PRO VAL TYR LEU ALA ALA VAL LEU GLU TYR LEU THR ALA SEQRES 7 Q 147 GLU ILE LEU GLU LEU ALA GLY ASN ALA ALA ARG ASP ASN SEQRES 8 Q 147 LYS LYS THR ARG ILE ILE PRO ARG HIS LEU GLN LEU ALA SEQRES 9 Q 147 ILE ARG ASN ASP GLU GLU LEU ASN LYS LEU LEU GLY ARG SEQRES 10 Q 147 VAL THR ILE ALA GLN GLY GLY VAL LEU PRO ASN ILE GLN SEQRES 11 Q 147 ALA VAL LEU LEU PRO LYS LYS THR GLU SER HIS HIS LYS SEQRES 12 Q 147 ALA LYS GLY LYS SEQRES 1 R 126 MET PRO GLU PRO ALA LYS SER ALA PRO ALA PRO LYS LYS SEQRES 2 R 126 GLY SER LYS LYS ALA VAL THR LYS ALA GLN LYS LYS ASP SEQRES 3 R 126 GLY LYS LYS ARG LYS ARG SER ARG LYS GLU SER TYR SER SEQRES 4 R 126 VAL TYR VAL TYR LYS VAL LEU LYS GLN VAL HIS PRO ASP SEQRES 5 R 126 THR GLY ILE SER SER LYS ALA MET GLY ILE MET ASN SER SEQRES 6 R 126 PHE VAL ASN ASP ILE PHE GLU ARG ILE ALA GLY GLU ALA SEQRES 7 R 126 SER ARG LEU ALA HIS TYR ASN LYS ARG SER THR ILE THR SEQRES 8 R 126 SER ARG GLU ILE GLN THR ALA VAL ARG LEU LEU LEU PRO SEQRES 9 R 126 GLY GLU LEU ALA LYS HIS ALA VAL SER GLU GLY THR LYS SEQRES 10 R 126 ALA VAL THR LYS TYR THR SER ALA LYS SEQRES 1 J 167 DT DA DC DT DT DA DC DA DT DG DA DC DA SEQRES 2 J 167 DG DG DA DT DG DT DA DT DA DT DA DT DC SEQRES 3 J 167 DT DG DA DC DA DC DG DT DG DC DC DT DG SEQRES 4 J 167 DG DA DG DA DC DT DA DG DG DG DA DG DT SEQRES 5 J 167 DA DA DT DC DC DC DC DT DT DG DG DC DG SEQRES 6 J 167 DG DT DT DA DA DA DA DC DG DC DG DG DG SEQRES 7 J 167 DG DG DA DC DA DG DC DG DC DG DT DA DC SEQRES 8 J 167 DG DT DG DC DG DT DT DT DA DA DG DC DG SEQRES 9 J 167 DG DT DG DC DT DA DG DA DG DC DT DG DT SEQRES 10 J 167 DC DT DA DC DG DA DC DC DA DA DT DT DG SEQRES 11 J 167 DA DG DC DG DG DC DC DT DC DG DG DC DA SEQRES 12 J 167 DC DC DG DG DG DA DT DT DC DT DC DC DA SEQRES 13 J 167 DG DG DC DG DG DC DC DA DG DT DG SEQRES 1 I 167 DC DA DC DT DG DG DC DC DG DC DC DT DG SEQRES 2 I 167 DG DA DG DA DA DT DC DC DC DG DG DT DG SEQRES 3 I 167 DC DC DG DA DG DG DC DC DG DC DT DC DA SEQRES 4 I 167 DA DT DT DG DG DT DC DG DT DA DG DA DC SEQRES 5 I 167 DA DG DC DT DC DT DA DG DC DA DC DC DG SEQRES 6 I 167 DC DT DT DA DA DA DC DG DC DA DC DG DT SEQRES 7 I 167 DA DC DG DC DG DC DT DG DT DC DC DC DC SEQRES 8 I 167 DC DG DC DG DT DT DT DT DA DA DC DC DG SEQRES 9 I 167 DC DC DA DA DG DG DG DG DA DT DT DA DC SEQRES 10 I 167 DT DC DC DC DT DA DG DT DC DT DC DC DA SEQRES 11 I 167 DG DG DC DA DC DG DT DG DT DC DA DG DA SEQRES 12 I 167 DT DA DT DA DT DA DC DA DT DC DC DT DG SEQRES 13 I 167 DT DC DA DT DG DT DA DA DG DT DA HELIX 1 AA1 GLY K 44 SER K 57 1 14 HELIX 2 AA2 ARG K 63 LYS K 79 1 17 HELIX 3 AA3 GLN K 85 ALA K 114 1 30 HELIX 4 AA4 MET K 120 GLY K 132 1 13 HELIX 5 AA5 ASP L 24 ILE L 29 5 6 HELIX 6 AA6 THR L 30 GLY L 41 1 12 HELIX 7 AA7 LEU L 49 ALA L 76 1 28 HELIX 8 AA8 THR L 82 GLY L 94 1 13 HELIX 9 AA9 THR M 16 ALA M 21 1 6 HELIX 10 AB1 PRO M 26 LYS M 36 1 11 HELIX 11 AB2 ALA M 45 ASN M 73 1 29 HELIX 12 AB3 ILE M 79 ASN M 89 1 11 HELIX 13 AB4 ASP M 90 LEU M 97 1 8 HELIX 14 AB5 TYR N 37 HIS N 49 1 13 HELIX 15 AB6 SER N 55 ASN N 84 1 30 HELIX 16 AB7 THR N 90 LEU N 102 1 13 HELIX 17 AB8 GLY N 104 SER N 123 1 20 HELIX 18 AB9 GLY O 44 SER O 57 1 14 HELIX 19 AC1 ARG O 63 LYS O 79 1 17 HELIX 20 AC2 GLN O 85 ALA O 114 1 30 HELIX 21 AC3 MET O 120 ARG O 131 1 12 HELIX 22 AC4 ASN P 25 ILE P 29 5 5 HELIX 23 AC5 THR P 30 GLY P 41 1 12 HELIX 24 AC6 LEU P 49 ALA P 76 1 28 HELIX 25 AC7 THR P 82 GLN P 93 1 12 HELIX 26 AC8 THR Q 16 ALA Q 21 1 6 HELIX 27 AC9 PRO Q 26 LYS Q 36 1 11 HELIX 28 AD1 ALA Q 45 ASN Q 73 1 29 HELIX 29 AD2 ILE Q 79 ASN Q 89 1 11 HELIX 30 AD3 ASP Q 90 LEU Q 97 1 8 HELIX 31 AD4 TYR R 37 HIS R 49 1 13 HELIX 32 AD5 SER R 55 ASN R 84 1 30 HELIX 33 AD6 THR R 90 LEU R 102 1 13 HELIX 34 AD7 PRO R 103 SER R 123 1 21 SHEET 1 AA1 2 ARG K 83 PHE K 84 0 SHEET 2 AA1 2 THR L 80 VAL L 81 1 O VAL L 81 N ARG K 83 SHEET 1 AA2 2 THR K 118 ILE K 119 0 SHEET 2 AA2 2 ARG L 45 ILE L 46 1 O ARG L 45 N ILE K 119 SHEET 1 AA3 2 ARG M 42 VAL M 43 0 SHEET 2 AA3 2 THR N 88 ILE N 89 1 O ILE N 89 N ARG M 42 SHEET 1 AA4 2 ARG M 77 ILE M 78 0 SHEET 2 AA4 2 GLY N 53 ILE N 54 1 O GLY N 53 N ILE M 78 SHEET 1 AA5 2 ARG O 83 PHE O 84 0 SHEET 2 AA5 2 THR P 80 VAL P 81 1 O VAL P 81 N ARG O 83 SHEET 1 AA6 2 THR O 118 ILE O 119 0 SHEET 2 AA6 2 ARG P 45 ILE P 46 1 O ARG P 45 N ILE O 119 SHEET 1 AA7 2 ARG Q 42 VAL Q 43 0 SHEET 2 AA7 2 THR R 88 ILE R 89 1 O ILE R 89 N ARG Q 42 SHEET 1 AA8 2 ARG Q 77 ILE Q 78 0 SHEET 2 AA8 2 GLY R 53 ILE R 54 1 O GLY R 53 N ILE Q 78 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000