HEADER HYDROLASE 17-AUG-21 7PHJ TITLE LPXC INHIBITORS WITH FLUOROPROLINE AS A NOVEL ZINC-BINDING GROUP CAN TITLE 2 SERVE AS A NOVEL CLASS OF ANTIBIOTIC WITH ACTIVITY AGAINST MULTIDRUG- TITLE 3 RESISTANT GRAM-NEGATIVE BACTERIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UDP-3-O-ACYL-GLCNAC DEACETYLASE,PROTEIN ENVA,UDP-3-O-[R-3- COMPND 5 HYDROXYMYRISTOYL]-N-ACETYLGLUCOSAMINE DEACETYLASE; COMPND 6 EC: 3.5.1.108; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: LPXC, ASMB, ENVA, B0096, JW0094; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ELASTASE, INHIBITOR, FLUOROPROLINE, ZINC-BINDING GROUP, ANTIBIOTIC, KEYWDS 2 MULTIDRUG-RESISTANT GRAM-NEGATIVE BACTERIA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.D.RYAN,T.D.PALLIN,M.B.A.C.LAMERS,P.M.LEONARD REVDAT 3 07-FEB-24 7PHJ 1 REMARK REVDAT 2 24-MAY-23 7PHJ 1 FORMUL REVDAT 1 07-SEP-22 7PHJ 0 JRNL AUTH M.D.RYAN,T.D.PALLIN,T.MULLINS,T.BLENCH,I.FRASER,J.DALLOW, JRNL AUTH 2 N.AHMED,C.ELLWOOD,S.GAINES,J.FLORES,Y.BLACKWELL,C.T.GARCIA, JRNL AUTH 3 G.SPENCE,A.REEVE,T.PANCHAL,B.DOMINGUEZ-FERNANDEZ, JRNL AUTH 4 P.M.LEONARD,M.B.A.C.LAMERS,A.ARDUIN,C.FOTINOU,E.GANCIA, JRNL AUTH 5 D.E.CLARK,E.BUSH,J.BETTS,C.RICHARDS,T.REA-DAVIES,A.D.KEEFE, JRNL AUTH 6 Y.ZHANG,H.T.SOUTTER,P.A.CENTRELLA,M.A.CLARK,J.W.CUOZZO, JRNL AUTH 7 C.E.DUMELIN,S.HABESHIAN,A.HUNT,E.A.SIGEL,D.M.TROAST, JRNL AUTH 8 B.L.M.DEJONGE JRNL TITL LPXC INHIBITORS WITH FLUOROPROLINE AS A NOVEL ZINC-BINDING JRNL TITL 2 GROUP CAN SERVE AS A NOVEL CLASS OF ANTIBIOTIC WITH ACTIVITY JRNL TITL 3 AGAINST MULTIDRUG-RESISTANT GRAM-NEGATIVE BACTERIA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 18351 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 989 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1343 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2272 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 41 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.93000 REMARK 3 B22 (A**2) : 0.93000 REMARK 3 B33 (A**2) : -3.01000 REMARK 3 B12 (A**2) : 0.46000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.255 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.215 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.546 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2361 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2142 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3215 ; 1.723 ; 1.635 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4927 ; 1.307 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 298 ; 7.707 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;35.276 ;22.114 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 352 ;17.452 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;15.348 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 318 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2707 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 515 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1195 ; 4.702 ; 5.397 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1194 ; 4.701 ; 5.391 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1492 ; 6.814 ; 8.088 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1493 ; 6.812 ; 8.095 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1166 ; 5.373 ; 5.883 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1167 ; 5.371 ; 5.881 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1724 ; 8.174 ; 8.631 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9298 ;11.649 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 9285 ;11.653 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7PHJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1292116284. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19366 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 103.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 18.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3P3G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M NA CITRATE TRIBASIC.2H2O, 0.1 M REMARK 280 TRIS PH 9.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 51.67500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.67500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.67500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 51.67500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 51.67500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 51.67500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 529 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 535 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 537 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 301 REMARK 465 ALA A 302 REMARK 465 VAL A 303 REMARK 465 LEU A 304 REMARK 465 ALA A 305 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 ARG A 58 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 131 CG CD NE CZ NH1 NH2 REMARK 470 SER A 168 OG REMARK 470 SER A 169 OG REMARK 470 GLN A 171 CG CD OE1 NE2 REMARK 470 ARG A 184 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 196 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 278 CG CD CE NZ REMARK 470 GLN A 279 CG CD OE1 NE2 REMARK 470 GLU A 283 CG CD OE1 OE2 REMARK 470 GLN A 288 CG CD OE1 NE2 REMARK 470 ASP A 289 CG OD1 OD2 REMARK 470 GLU A 292 CG CD OE1 OE2 REMARK 470 LEU A 295 CG CD1 CD2 REMARK 470 LYS A 298 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 62 10.02 58.90 REMARK 500 THR A 76 53.51 71.96 REMARK 500 ASN A 97 43.01 -97.32 REMARK 500 MET A 104 -117.69 49.19 REMARK 500 GLU A 134 144.12 -173.78 REMARK 500 ASP A 140 92.48 -160.53 REMARK 500 ASP A 219 -155.59 -84.90 REMARK 500 ASP A 233 41.85 -99.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 79 NE2 REMARK 620 2 HIS A 238 NE2 96.6 REMARK 620 3 ASP A 242 OD1 101.8 103.2 REMARK 620 4 7PX A 402 N3 94.2 153.7 97.9 REMARK 620 5 7PX A 402 O3 136.8 78.9 121.2 76.8 REMARK 620 N 1 2 3 4 DBREF 7PHJ A 1 305 UNP P0A725 LPXC_ECOLI 1 305 SEQRES 1 A 305 MET ILE LYS GLN ARG THR LEU LYS ARG ILE VAL GLN ALA SEQRES 2 A 305 THR GLY VAL GLY LEU HIS THR GLY LYS LYS VAL THR LEU SEQRES 3 A 305 THR LEU ARG PRO ALA PRO ALA ASN THR GLY VAL ILE TYR SEQRES 4 A 305 ARG ARG THR ASP LEU ASN PRO PRO VAL ASP PHE PRO ALA SEQRES 5 A 305 ASP ALA LYS SER VAL ARG ASP THR MET LEU CYS THR CYS SEQRES 6 A 305 LEU VAL ASN GLU HIS ASP VAL ARG ILE SER THR VAL GLU SEQRES 7 A 305 HIS LEU ASN ALA ALA LEU ALA GLY LEU GLY ILE ASP ASN SEQRES 8 A 305 ILE VAL ILE GLU VAL ASN ALA PRO GLU ILE PRO ILE MET SEQRES 9 A 305 ASP GLY SER ALA ALA PRO PHE VAL TYR LEU LEU LEU ASP SEQRES 10 A 305 ALA GLY ILE ASP GLU LEU ASN CYS ALA LYS LYS PHE VAL SEQRES 11 A 305 ARG ILE LYS GLU THR VAL ARG VAL GLU ASP GLY ASP LYS SEQRES 12 A 305 TRP ALA GLU PHE LYS PRO TYR ASN GLY PHE SER LEU ASP SEQRES 13 A 305 PHE THR ILE ASP PHE ASN HIS PRO ALA ILE ASP SER SER SEQRES 14 A 305 ASN GLN ARG TYR ALA MET ASN PHE SER ALA ASP ALA PHE SEQRES 15 A 305 MET ARG GLN ILE SER ARG ALA ARG THR PHE GLY PHE MET SEQRES 16 A 305 ARG ASP ILE GLU TYR LEU GLN SER ARG GLY LEU CYS LEU SEQRES 17 A 305 GLY GLY SER PHE ASP CYS ALA ILE VAL VAL ASP ASP TYR SEQRES 18 A 305 ARG VAL LEU ASN GLU ASP GLY LEU ARG PHE GLU ASP GLU SEQRES 19 A 305 PHE VAL ARG HIS LYS MET LEU ASP ALA ILE GLY ASP LEU SEQRES 20 A 305 PHE MET CYS GLY HIS ASN ILE ILE GLY ALA PHE THR ALA SEQRES 21 A 305 TYR LYS SER GLY HIS ALA LEU ASN ASN LYS LEU LEU GLN SEQRES 22 A 305 ALA VAL LEU ALA LYS GLN GLU ALA TRP GLU TYR VAL THR SEQRES 23 A 305 PHE GLN ASP ASP ALA GLU LEU PRO LEU ALA PHE LYS ALA SEQRES 24 A 305 PRO SER ALA VAL LEU ALA HET ZN A 401 1 HET 7PX A 402 37 HETNAM ZN ZINC ION HETNAM 7PX (2~{R},4~{R})-4-[[(2~{S},4~{S})-4-FLUORANYLPYRROLIDIN- HETNAM 2 7PX 2-YL]CARBONYLAMINO]-1-(2-METHYLPROPANOYL)-~{N}-[[4-(2- HETNAM 3 7PX PHENYLETHYNYL)PHENYL]METHYL]PYRROLIDINE-2-CARBOXAMIDE FORMUL 2 ZN ZN 2+ FORMUL 3 7PX C29 H33 F N4 O3 FORMUL 4 HOH *41(H2 O) HELIX 1 AA1 ASP A 53 LYS A 55 5 3 HELIX 2 AA2 VAL A 77 LEU A 87 1 11 HELIX 3 AA3 ALA A 108 ALA A 118 1 11 HELIX 4 AA4 ASP A 167 GLN A 171 5 5 HELIX 5 AA5 SER A 178 ILE A 186 1 9 HELIX 6 AA6 ASP A 197 ARG A 204 1 8 HELIX 7 AA7 ASP A 233 PHE A 248 1 16 HELIX 8 AA8 MET A 249 GLY A 251 5 3 HELIX 9 AA9 GLY A 264 LYS A 278 1 15 HELIX 10 AB1 PRO A 294 LYS A 298 5 5 SHEET 1 AA1 2 LYS A 3 LEU A 7 0 SHEET 2 AA1 2 ILE A 120 ALA A 126 -1 O ASP A 121 N THR A 6 SHEET 1 AA2 5 VAL A 11 VAL A 16 0 SHEET 2 AA2 5 LYS A 23 PRO A 30 -1 O LEU A 26 N ALA A 13 SHEET 3 AA2 5 ILE A 92 VAL A 96 -1 O GLU A 95 N THR A 27 SHEET 4 AA2 5 VAL A 37 ARG A 41 1 N ILE A 38 O ILE A 94 SHEET 5 AA2 5 VAL A 48 PRO A 51 -1 O PHE A 50 N TYR A 39 SHEET 1 AA3 3 VAL A 57 ARG A 58 0 SHEET 2 AA3 3 CYS A 65 VAL A 67 -1 O CYS A 65 N ARG A 58 SHEET 3 AA3 3 ARG A 73 SER A 75 -1 O ILE A 74 N LEU A 66 SHEET 1 AA4 5 VAL A 136 ASP A 140 0 SHEET 2 AA4 5 LYS A 143 LYS A 148 -1 O PHE A 147 N VAL A 136 SHEET 3 AA4 5 ILE A 254 TYR A 261 -1 O THR A 259 N GLU A 146 SHEET 4 AA4 5 PHE A 153 THR A 158 1 N SER A 154 O PHE A 258 SHEET 5 AA4 5 TYR A 173 ASN A 176 -1 O TYR A 173 N PHE A 157 SHEET 1 AA5 5 VAL A 136 ASP A 140 0 SHEET 2 AA5 5 LYS A 143 LYS A 148 -1 O PHE A 147 N VAL A 136 SHEET 3 AA5 5 ILE A 254 TYR A 261 -1 O THR A 259 N GLU A 146 SHEET 4 AA5 5 PHE A 129 ILE A 132 1 N ILE A 132 O ILE A 255 SHEET 5 AA5 5 TRP A 282 VAL A 285 -1 O GLU A 283 N ARG A 131 SHEET 1 AA6 2 PHE A 192 PHE A 194 0 SHEET 2 AA6 2 ILE A 216 VAL A 218 1 O ILE A 216 N GLY A 193 LINK NE2 HIS A 79 ZN ZN A 401 1555 1555 2.05 LINK NE2 HIS A 238 ZN ZN A 401 1555 1555 2.09 LINK OD1 ASP A 242 ZN ZN A 401 1555 1555 1.94 LINK ZN ZN A 401 N3 7PX A 402 1555 1555 2.13 LINK ZN ZN A 401 O3 7PX A 402 1555 1555 2.32 CISPEP 1 ASN A 45 PRO A 46 0 -2.63 CRYST1 129.497 129.497 103.350 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007722 0.004458 0.000000 0.00000 SCALE2 0.000000 0.008917 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009676 0.00000