HEADER IMMUNE SYSTEM 18-AUG-21 7PHS TITLE HIGHLY POTENT IL6 ANTAGONISTIC ANTIBODY SELECTED FROM A CAMELID IMMUNE TITLE 2 PHAGE DISPLAY REPERTOIRE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAVY CHAIN OF FAB129D3; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LIGHT CHAIN OF FAB129D3; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 3 ORGANISM_TAXID: 9844; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK CELLS; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 9 ORGANISM_TAXID: 9844; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_CELL_LINE: HEK KEYWDS IL6, CAMELID, FAB, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.CAMBILLAU,E.PANNECOUCKE,H.DE HAARD REVDAT 2 31-JAN-24 7PHS 1 REMARK REVDAT 1 07-SEP-22 7PHS 0 JRNL AUTH C.CAMBILLAU,E.PANNECOUCKE,H.DE HAARD JRNL TITL NON-PROMISCUOUS PAIRING IN A HIGHLY POTENT IL6 ANTAGONISTIC JRNL TITL 2 ANTIBODY SELECTED FROM A CAMELID IMMUNE PHAGE DISPLAY JRNL TITL 3 REPERTOIRE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 13560 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.276 REMARK 3 R VALUE (WORKING SET) : 0.273 REMARK 3 FREE R VALUE : 0.303 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.910 REMARK 3 FREE R VALUE TEST SET COUNT : 1344 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 7 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.77 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.99 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.42 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2688 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2966 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2415 REMARK 3 BIN R VALUE (WORKING SET) : 0.2937 REMARK 3 BIN FREE R VALUE : 0.3238 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.16 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 273 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3236 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 89 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 64.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -13.89380 REMARK 3 B22 (A**2) : -13.89380 REMARK 3 B33 (A**2) : 27.78760 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.538 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.427 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 3.076 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.418 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.824 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.794 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3339 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4570 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1060 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 61 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 487 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3339 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 455 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3649 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.28 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.54 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 22.43 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {H|1 - H|111} REMARK 3 ORIGIN FOR THE GROUP (A): 14.1497 -30.6889 60.1940 REMARK 3 T TENSOR REMARK 3 T11: 0.0090 T22: -0.0045 REMARK 3 T33: -0.0070 T12: -0.0323 REMARK 3 T13: 0.0072 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.1647 L22: 0.2125 REMARK 3 L33: 0.2445 L12: 0.4530 REMARK 3 L13: -0.0993 L23: -0.0166 REMARK 3 S TENSOR REMARK 3 S11: -0.0001 S12: -0.0030 S13: -0.0001 REMARK 3 S21: 0.0048 S22: -0.0009 S23: -0.0011 REMARK 3 S31: 0.0014 S32: 0.0014 S33: 0.0010 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {H|112 - H|223} REMARK 3 ORIGIN FOR THE GROUP (A): 10.5738 -20.2339 31.2554 REMARK 3 T TENSOR REMARK 3 T11: 0.0152 T22: -0.0059 REMARK 3 T33: -0.0085 T12: 0.0125 REMARK 3 T13: 0.0071 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.2131 REMARK 3 L33: 0.4026 L12: 0.0665 REMARK 3 L13: -0.0781 L23: 0.1539 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: 0.0016 S13: 0.0065 REMARK 3 S21: -0.0041 S22: -0.0030 S23: 0.0044 REMARK 3 S31: -0.0073 S32: -0.0054 S33: 0.0021 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {L|2 - L|110} REMARK 3 ORIGIN FOR THE GROUP (A): -3.1898 -42.3138 55.6220 REMARK 3 T TENSOR REMARK 3 T11: 0.0059 T22: -0.0018 REMARK 3 T33: -0.0033 T12: -0.0345 REMARK 3 T13: 0.0141 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.1948 L22: 0.1365 REMARK 3 L33: 0.1218 L12: 0.4967 REMARK 3 L13: -0.1810 L23: 0.0814 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: -0.0010 S13: -0.0001 REMARK 3 S21: -0.0029 S22: -0.0013 S23: 0.0008 REMARK 3 S31: -0.0007 S32: -0.0006 S33: 0.0006 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {L|111 - L|212} REMARK 3 ORIGIN FOR THE GROUP (A): 5.6576 -31.0410 19.5281 REMARK 3 T TENSOR REMARK 3 T11: 0.0126 T22: 0.0013 REMARK 3 T33: -0.0144 T12: 0.0170 REMARK 3 T13: -0.0013 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.1579 L22: 0.1051 REMARK 3 L33: 0.3441 L12: -0.2762 REMARK 3 L13: 0.2524 L23: -0.2329 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: -0.0001 S13: -0.0065 REMARK 3 S21: 0.0025 S22: -0.0006 S23: 0.0091 REMARK 3 S31: 0.0030 S32: -0.0002 S33: -0.0001 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7PHS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1292117723. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.923 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13561 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.770 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.86000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1A8J, 3B2U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 8K, 0.2M LI2SO4, 0.1M ACETATE REMARK 280 PH 4.5., VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 142.91500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.49500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.49500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 214.37250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.49500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.49500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 71.45750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.49500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.49500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 214.37250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.49500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.49500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 71.45750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 142.91500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN L 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU H 11 CG CD1 CD2 REMARK 470 ARG H 32 NE CZ NH1 NH2 REMARK 470 LYS H 66 CD CE NZ REMARK 470 LYS H 152 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER H 139 CD LYS L 208 1.36 REMARK 500 OG SER H 139 CE LYS L 208 1.47 REMARK 500 NZ LYS H 138 O THR L 209 1.79 REMARK 500 OG SER H 139 CG LYS L 208 2.03 REMARK 500 O GLY H 143 N SER H 195 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS H 13 C PRO H 14 N 0.157 REMARK 500 THR H 88 C PRO H 89 N 0.167 REMARK 500 PHE H 155 C PRO H 156 N 0.156 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO H 14 C - N - CA ANGL. DEV. = 14.2 DEGREES REMARK 500 PRO H 14 C - N - CD ANGL. DEV. = -13.3 DEGREES REMARK 500 ASP H 58 CB - CA - C ANGL. DEV. = 12.4 DEGREES REMARK 500 PRO H 89 C - N - CA ANGL. DEV. = 12.2 DEGREES REMARK 500 ALA H 123 C - N - CA ANGL. DEV. = 24.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG H 32 -120.64 22.47 REMARK 500 PRO H 43 -69.33 1.79 REMARK 500 HIS H 108 144.14 154.61 REMARK 500 ALA H 123 74.92 60.65 REMARK 500 SER H 136 149.15 -175.93 REMARK 500 ALA H 145 -169.34 -120.15 REMARK 500 ASP H 153 83.03 57.33 REMARK 500 PRO H 156 -152.86 -107.42 REMARK 500 PRO H 158 -164.22 -113.86 REMARK 500 SER H 195 -28.93 -36.89 REMARK 500 THR H 200 -78.64 -114.06 REMARK 500 PRO L 14 54.09 -67.41 REMARK 500 ASN L 27 42.41 -92.12 REMARK 500 ASP L 28 -74.66 -162.76 REMARK 500 TYR L 34 50.99 -108.02 REMARK 500 VAL L 53 -58.89 69.63 REMARK 500 SER L 69 -72.90 -110.75 REMARK 500 GLU L 85 91.04 -63.91 REMARK 500 ASP L 155 -96.60 54.74 REMARK 500 ASN L 174 -13.73 101.12 REMARK 500 SER L 194 167.24 175.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER H 122 ALA H 123 69.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER H 122 12.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 349 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH H 350 DISTANCE = 7.29 ANGSTROMS REMARK 525 HOH H 351 DISTANCE = 8.24 ANGSTROMS REMARK 525 HOH L 336 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH L 337 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH L 338 DISTANCE = 6.63 ANGSTROMS DBREF 7PHS H 1 223 PDB 7PHS 7PHS 1 223 DBREF 7PHS L 1 212 PDB 7PHS 7PHS 1 212 SEQRES 1 H 223 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 223 PRO SER GLN THR LEU SER LEU THR CYS THR VAL SER GLY SEQRES 3 H 223 GLY SER ILE THR SER ARG TYR TYR ALA TRP SER TRP ILE SEQRES 4 H 223 ARG GLN PRO PRO GLY LYS GLY LEU GLU TRP ILE GLY VAL SEQRES 5 H 223 ILE ASP TYR ASP GLY ASP THR TYR TYR SER PRO SER LEU SEQRES 6 H 223 LYS SER ARG VAL SER ILE SER TRP ASP THR SER LYS ASN SEQRES 7 H 223 GLN PHE SER LEU LYS LEU SER SER VAL THR PRO ALA ASP SEQRES 8 H 223 THR ALA VAL TYR TYR CYS ALA ARG ASP PRO ASP VAL VAL SEQRES 9 H 223 THR GLY PHE HIS TYR ASP TYR TRP GLY GLN GLY THR MET SEQRES 10 H 223 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 H 223 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 12 H 223 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 H 223 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 14 H 223 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 H 223 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 H 223 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 17 H 223 HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU SEQRES 18 H 223 PRO LYS SEQRES 1 L 212 GLN SER ALA LEU THR GLN PRO PRO SER VAL SER GLY THR SEQRES 2 L 212 PRO GLY GLN SER VAL THR ILE SER CYS ALA GLY ALA ASN SEQRES 3 L 212 ASN ASP ILE GLY THR TYR ALA TYR VAL SER TRP TYR GLN SEQRES 4 L 212 GLN LEU PRO GLY THR ALA PRO LYS LEU MET ILE TYR LYS SEQRES 5 L 212 VAL THR THR ARG ALA SER GLY ILE PRO ASP ARG PHE SER SEQRES 6 L 212 GLY SER LYS SER GLY ASN THR ALA SER LEU THR ILE SER SEQRES 7 L 212 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS ALA SEQRES 8 L 212 SER TYR ARG ASN PHE ASN ASN ALA VAL PHE GLY THR GLY SEQRES 9 L 212 THR LYS LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SEQRES 10 L 212 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 L 212 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 L 212 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 L 212 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 L 212 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 L 212 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 L 212 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 L 212 THR VAL ALA PRO FORMUL 3 HOH *89(H2 O) HELIX 1 AA1 LEU H 65 VAL H 69 5 5 HELIX 2 AA2 THR H 88 THR H 92 5 5 HELIX 3 AA3 SER H 165 ALA H 167 5 3 HELIX 4 AA4 SER H 196 LEU H 198 5 3 HELIX 5 AA5 SER L 125 ALA L 131 1 7 HELIX 6 AA6 THR L 185 SER L 191 1 7 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O THR H 23 N GLN H 5 SHEET 3 AA1 4 GLN H 79 LEU H 84 -1 O PHE H 80 N CYS H 22 SHEET 4 AA1 4 SER H 72 ASP H 74 -1 N ASP H 74 O GLN H 79 SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 THR H 116 VAL H 120 1 O THR H 119 N VAL H 12 SHEET 3 AA2 6 ALA H 93 ASP H 100 -1 N ALA H 93 O VAL H 118 SHEET 4 AA2 6 ALA H 35 GLN H 41 -1 N ILE H 39 O TYR H 96 SHEET 5 AA2 6 GLU H 48 ASP H 54 -1 O ILE H 53 N TRP H 36 SHEET 6 AA2 6 THR H 59 TYR H 61 -1 O TYR H 60 N VAL H 52 SHEET 1 AA3 4 SER H 129 LEU H 133 0 SHEET 2 AA3 4 THR H 144 TYR H 154 -1 O LYS H 152 N SER H 129 SHEET 3 AA3 4 TYR H 185 PRO H 194 -1 O LEU H 187 N VAL H 151 SHEET 4 AA3 4 VAL H 172 THR H 174 -1 N HIS H 173 O VAL H 190 SHEET 1 AA4 4 SER H 129 LEU H 133 0 SHEET 2 AA4 4 THR H 144 TYR H 154 -1 O LYS H 152 N SER H 129 SHEET 3 AA4 4 TYR H 185 PRO H 194 -1 O LEU H 187 N VAL H 151 SHEET 4 AA4 4 VAL H 178 LEU H 179 -1 N VAL H 178 O SER H 186 SHEET 1 AA5 3 THR H 160 TRP H 163 0 SHEET 2 AA5 3 ILE H 204 HIS H 209 -1 O ASN H 206 N SER H 162 SHEET 3 AA5 3 THR H 214 LYS H 219 -1 O THR H 214 N HIS H 209 SHEET 1 AA6 6 SER L 9 GLY L 12 0 SHEET 2 AA6 6 THR L 105 VAL L 109 1 O THR L 108 N GLY L 12 SHEET 3 AA6 6 ASP L 87 ARG L 94 -1 N TYR L 88 O THR L 105 SHEET 4 AA6 6 SER L 36 GLN L 40 -1 N TYR L 38 O TYR L 89 SHEET 5 AA6 6 LYS L 47 TYR L 51 -1 O MET L 49 N TRP L 37 SHEET 6 AA6 6 THR L 55 ARG L 56 -1 O THR L 55 N TYR L 51 SHEET 1 AA7 4 SER L 9 GLY L 12 0 SHEET 2 AA7 4 THR L 105 VAL L 109 1 O THR L 108 N GLY L 12 SHEET 3 AA7 4 ASP L 87 ARG L 94 -1 N TYR L 88 O THR L 105 SHEET 4 AA7 4 ASN L 98 PHE L 101 -1 O ASN L 98 N ARG L 94 SHEET 1 AA8 3 VAL L 18 ALA L 23 0 SHEET 2 AA8 3 THR L 72 ILE L 77 -1 O ALA L 73 N CYS L 22 SHEET 3 AA8 3 PHE L 64 LYS L 68 -1 N SER L 65 O THR L 76 SHEET 1 AA9 4 SER L 118 PHE L 122 0 SHEET 2 AA9 4 ALA L 134 PHE L 143 -1 O SER L 141 N SER L 118 SHEET 3 AA9 4 TYR L 176 LEU L 184 -1 O ALA L 178 N ILE L 140 SHEET 4 AA9 4 VAL L 163 THR L 165 -1 N GLU L 164 O TYR L 181 SHEET 1 AB1 4 SER L 118 PHE L 122 0 SHEET 2 AB1 4 ALA L 134 PHE L 143 -1 O SER L 141 N SER L 118 SHEET 3 AB1 4 TYR L 176 LEU L 184 -1 O ALA L 178 N ILE L 140 SHEET 4 AB1 4 SER L 169 LYS L 170 -1 N SER L 169 O ALA L 177 SHEET 1 AB2 4 SER L 157 VAL L 159 0 SHEET 2 AB2 4 THR L 149 ALA L 154 -1 N ALA L 154 O SER L 157 SHEET 3 AB2 4 TYR L 195 HIS L 201 -1 O GLN L 198 N ALA L 151 SHEET 4 AB2 4 SER L 204 VAL L 210 -1 O VAL L 206 N VAL L 199 SSBOND 1 CYS H 22 CYS H 97 1555 1555 2.03 SSBOND 2 CYS H 149 CYS H 205 1555 1555 2.00 SSBOND 3 CYS L 22 CYS L 90 1555 1555 2.00 SSBOND 4 CYS L 138 CYS L 197 1555 1555 2.03 CISPEP 1 PHE H 155 PRO H 156 0 -9.38 CISPEP 2 GLU H 157 PRO H 158 0 -10.95 CISPEP 3 GLN L 16 SER L 17 0 2.52 CISPEP 4 ASN L 95 PHE L 96 0 -13.98 CISPEP 5 TYR L 144 PRO L 145 0 0.01 CRYST1 58.990 58.990 285.830 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016952 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016952 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003499 0.00000