data_7POF # _entry.id 7POF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.394 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7POF pdb_00007pof 10.2210/pdb7pof/pdb WWPDB D_1292118040 ? ? BMRB 51079 ? 10.13018/BMR51079 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-03-16 2 'Structure model' 1 1 2023-06-14 3 'Structure model' 1 2 2024-06-19 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_database_status 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_database_status.status_code_nmr_data' 2 3 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7POF _pdbx_database_status.recvd_initial_deposition_date 2021-09-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details . _pdbx_database_related.db_id 51079 _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Jones, A.N.' 1 0000-0002-2084-3625 'Sattler, M.' 2 0000-0002-1594-0527 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 50 _citation.language ? _citation.page_first 2350 _citation.page_last 2362 _citation.title 'Structural effects of m6A modification of the Xist A-repeat AUCG tetraloop and its recognition by YTHDC1.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkac080 _citation.pdbx_database_id_PubMed 35166835 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jones, A.N.' 1 ? primary 'Tikhaia, E.' 2 ? primary 'Mourao, A.' 3 ? primary 'Sattler, M.' 4 0000-0002-1594-0527 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;RNA (5'-R(*GP*GP*CP*GP*CP*(6MZ)P*UP*CP*GP*GP*CP*GP*CP*C)-3') ; _entity.formula_weight 4506.766 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GGCGC(6MZ)UCGGCGCC' _entity_poly.pdbx_seq_one_letter_code_can GGCGCAUCGGCGCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 G n 1 5 C n 1 6 6MZ n 1 7 U n 1 8 C n 1 9 G n 1 10 G n 1 11 C n 1 12 G n 1 13 C n 1 14 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 14 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 6MZ 'RNA linking' n "N6-METHYLADENOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O7 P' 361.248 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 G 4 4 4 G G A . n A 1 5 C 5 5 5 C C A . n A 1 6 6MZ 6 6 6 6MZ 6MZ A . n A 1 7 U 7 7 7 U U A . n A 1 8 C 8 8 8 C C A . n A 1 9 G 9 9 9 G G A . n A 1 10 G 10 10 10 G G A . n A 1 11 C 11 11 11 C C A . n A 1 12 G 12 12 12 G G A . n A 1 13 C 13 13 13 C C A . n A 1 14 C 14 14 14 C C A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7POF _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7POF _struct.title 'Structural effects of m6A modification of the Xist A repeat AUCG tetraloop and its recognition by YTHDC1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7POF _struct_keywords.text 'Xist, lncRNA, RNA' _struct_keywords.pdbx_keywords RNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7POF _struct_ref.pdbx_db_accession 7POF _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7POF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 14 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7POF _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 14 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 14 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 600 ? 1 MORE 1 ? 1 'SSA (A^2)' 2780 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A C 5 "C3'" ? ? ? 1_555 A 6MZ 6 O3P ? ? A C 5 A 6MZ 6 1_555 ? ? ? ? ? ? ? 1.468 ? ? covale2 covale both ? A C 5 "O3'" ? ? ? 1_555 A 6MZ 6 P ? ? A C 5 A 6MZ 6 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale3 covale both ? A 6MZ 6 "O3'" ? ? ? 1_555 A U 7 P ? ? A 6MZ 6 A U 7 1_555 ? ? ? ? ? ? ? 1.597 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 14 N3 ? ? A G 1 A C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 14 O2 ? ? A G 1 A C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 14 N4 ? ? A G 1 A C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 13 N3 ? ? A G 2 A C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 13 O2 ? ? A G 2 A C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 13 N4 ? ? A G 2 A C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 12 N1 ? ? A C 3 A G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 12 O6 ? ? A C 3 A G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 12 N2 ? ? A C 3 A G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 11 N3 ? ? A G 4 A C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 11 O2 ? ? A G 4 A C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 11 N4 ? ? A G 4 A C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 10 N1 ? ? A C 5 A G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 10 O6 ? ? A C 5 A G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 10 N2 ? ? A C 5 A G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "O3'" A C 5 ? ? O3P A 6MZ 6 ? ? 0.06 2 2 "O3'" A C 5 ? ? O3P A 6MZ 6 ? ? 0.06 3 3 "O3'" A C 5 ? ? O3P A 6MZ 6 ? ? 0.06 4 4 "O3'" A C 5 ? ? O3P A 6MZ 6 ? ? 0.06 5 5 "O3'" A C 5 ? ? O3P A 6MZ 6 ? ? 0.06 6 6 "O3'" A C 5 ? ? O3P A 6MZ 6 ? ? 0.06 7 7 "O3'" A C 5 ? ? O3P A 6MZ 6 ? ? 0.06 8 8 "O3'" A C 5 ? ? O3P A 6MZ 6 ? ? 0.06 9 9 "O3'" A C 5 ? ? O3P A 6MZ 6 ? ? 0.06 10 10 "O3'" A C 5 ? ? O3P A 6MZ 6 ? ? 0.06 # _pdbx_entry_details.entry_id 7POF _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_nmr_ensemble.entry_id 7POF _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7POF _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '25 mM sodium chloride, 25 mM sodium phosphate, 100% D2O' '100% D2O' 'D2O unlabeled (m6A)UCG tetraloop sample 1' solution ? 2 '25 mM sodium chloride, 25 mM sodium phosphate, 95% H2O/5% D2O' '95% H2O/5% D2O' 'H2O unlabeled (m6A)UCG tetraloop sample 2' solution ? 3 '25 mM sodium chloride, 25 mM sodium phosphate, 100% D2O' '100% D2O' 'U 13C 15N (m6A)UCG tetraloop sample 2' solution '6MZ is unlabeled' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'sodium chloride' 25 ? mM 'natural abundance' 1 'sodium phosphate' 25 ? mM 'natural abundance' 2 'sodium chloride' 25 ? mM 'natural abundance' 2 'sodium phosphate' 25 ? mM 'natural abundance' 3 'sodium chloride' 25 ? mM 'natural abundance' 3 'sodium phosphate' 25 ? mM 'natural abundance' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 atm 1 6.5 25 ? ? mM '298 K' ? pH ? ? K 2 298 atm 1 6.5 25 ? ? mM '298 K' ? pH ? ? K 3 298 atm 1 6.5 25 ? ? mM '298 K' ? pH ? ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 3 1 2 '2D 1H-1H NOESY' 2 isotropic 1 1 1 '2D 1H-1H NOESY' 2 isotropic 2 1 1 '2D 1H-1H TOCSY' 1 isotropic 4 1 3 '2D HNN COSY' 1 isotropic 5 1 3 '3D 1H-13C NOESY HMQC' 2 isotropic 6 1 3 '2D 1H-13C HMQC' 2 isotropic # _pdbx_nmr_refine.entry_id 7POF _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 3 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'chemical shift assignment' 'CcpNmr Analysis' 2.4 CCPN 2 'structure calculation' 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 3 refinement 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 4 processing TopSpin '3.5 pl6' 'Bruker Biospin' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 6MZ C2 C Y N 1 6MZ C4 C Y N 2 6MZ C5 C Y N 3 6MZ O1P O N N 4 6MZ O2P O N N 5 6MZ N9 N Y N 6 6MZ N3 N Y N 7 6MZ N1 N Y N 8 6MZ C6 C Y N 9 6MZ N6 N N N 10 6MZ C9 C N N 11 6MZ N7 N Y N 12 6MZ C8 C Y N 13 6MZ "O5'" O N N 14 6MZ "C5'" C N N 15 6MZ "C4'" C N R 16 6MZ "O4'" O N N 17 6MZ "C1'" C N R 18 6MZ "C2'" C N R 19 6MZ "O2'" O N N 20 6MZ "C3'" C N S 21 6MZ "O3'" O N N 22 6MZ P P N N 23 6MZ O3P O N N 24 6MZ H2 H N N 25 6MZ H1P H N N 26 6MZ H8 H N N 27 6MZ "H1'" H N N 28 6MZ H9C1 H N N 29 6MZ H9C2 H N N 30 6MZ "H5'1" H N N 31 6MZ "H5'2" H N N 32 6MZ "H4'" H N N 33 6MZ "H3'" H N N 34 6MZ "H2'" H N N 35 6MZ HA H N N 36 6MZ HB H N N 37 6MZ H3P H N N 38 6MZ H6 H N N 39 6MZ H9 H N N 40 C OP3 O N N 41 C P P N N 42 C OP1 O N N 43 C OP2 O N N 44 C "O5'" O N N 45 C "C5'" C N N 46 C "C4'" C N R 47 C "O4'" O N N 48 C "C3'" C N S 49 C "O3'" O N N 50 C "C2'" C N R 51 C "O2'" O N N 52 C "C1'" C N R 53 C N1 N N N 54 C C2 C N N 55 C O2 O N N 56 C N3 N N N 57 C C4 C N N 58 C N4 N N N 59 C C5 C N N 60 C C6 C N N 61 C HOP3 H N N 62 C HOP2 H N N 63 C "H5'" H N N 64 C "H5''" H N N 65 C "H4'" H N N 66 C "H3'" H N N 67 C "HO3'" H N N 68 C "H2'" H N N 69 C "HO2'" H N N 70 C "H1'" H N N 71 C H41 H N N 72 C H42 H N N 73 C H5 H N N 74 C H6 H N N 75 G OP3 O N N 76 G P P N N 77 G OP1 O N N 78 G OP2 O N N 79 G "O5'" O N N 80 G "C5'" C N N 81 G "C4'" C N R 82 G "O4'" O N N 83 G "C3'" C N S 84 G "O3'" O N N 85 G "C2'" C N R 86 G "O2'" O N N 87 G "C1'" C N R 88 G N9 N Y N 89 G C8 C Y N 90 G N7 N Y N 91 G C5 C Y N 92 G C6 C N N 93 G O6 O N N 94 G N1 N N N 95 G C2 C N N 96 G N2 N N N 97 G N3 N N N 98 G C4 C Y N 99 G HOP3 H N N 100 G HOP2 H N N 101 G "H5'" H N N 102 G "H5''" H N N 103 G "H4'" H N N 104 G "H3'" H N N 105 G "HO3'" H N N 106 G "H2'" H N N 107 G "HO2'" H N N 108 G "H1'" H N N 109 G H8 H N N 110 G H1 H N N 111 G H21 H N N 112 G H22 H N N 113 U OP3 O N N 114 U P P N N 115 U OP1 O N N 116 U OP2 O N N 117 U "O5'" O N N 118 U "C5'" C N N 119 U "C4'" C N R 120 U "O4'" O N N 121 U "C3'" C N S 122 U "O3'" O N N 123 U "C2'" C N R 124 U "O2'" O N N 125 U "C1'" C N R 126 U N1 N N N 127 U C2 C N N 128 U O2 O N N 129 U N3 N N N 130 U C4 C N N 131 U O4 O N N 132 U C5 C N N 133 U C6 C N N 134 U HOP3 H N N 135 U HOP2 H N N 136 U "H5'" H N N 137 U "H5''" H N N 138 U "H4'" H N N 139 U "H3'" H N N 140 U "HO3'" H N N 141 U "H2'" H N N 142 U "HO2'" H N N 143 U "H1'" H N N 144 U H3 H N N 145 U H5 H N N 146 U H6 H N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6MZ C4 C5 sing Y N 1 6MZ C4 N9 sing Y N 2 6MZ C2 N3 sing Y N 3 6MZ C4 N3 doub Y N 4 6MZ C2 N1 doub Y N 5 6MZ C5 C6 doub Y N 6 6MZ N1 C6 sing Y N 7 6MZ C6 N6 sing N N 8 6MZ N6 C9 sing N N 9 6MZ C5 N7 sing Y N 10 6MZ N9 C8 sing Y N 11 6MZ N7 C8 doub Y N 12 6MZ "O5'" "C5'" sing N N 13 6MZ "C1'" "H1'" sing N N 14 6MZ C9 H9C1 sing N N 15 6MZ C9 H9C2 sing N N 16 6MZ "C5'" "H5'1" sing N N 17 6MZ "C5'" "H5'2" sing N N 18 6MZ "C4'" "H4'" sing N N 19 6MZ "C3'" "H3'" sing N N 20 6MZ "C2'" "H2'" sing N N 21 6MZ "O2'" HA sing N N 22 6MZ "O3'" HB sing N N 23 6MZ O3P H3P sing N N 24 6MZ "C5'" "C4'" sing N N 25 6MZ "C4'" "O4'" sing N N 26 6MZ N9 "C1'" sing N N 27 6MZ "O4'" "C1'" sing N N 28 6MZ "C1'" "C2'" sing N N 29 6MZ "C2'" "O2'" sing N N 30 6MZ "C4'" "C3'" sing N N 31 6MZ "C2'" "C3'" sing N N 32 6MZ "C3'" "O3'" sing N N 33 6MZ O1P P sing N N 34 6MZ O2P P doub N N 35 6MZ "O5'" P sing N N 36 6MZ P O3P sing N N 37 6MZ C2 H2 sing N N 38 6MZ O1P H1P sing N N 39 6MZ C8 H8 sing N N 40 6MZ N6 H6 sing N N 41 6MZ C9 H9 sing N N 42 C OP3 P sing N N 43 C OP3 HOP3 sing N N 44 C P OP1 doub N N 45 C P OP2 sing N N 46 C P "O5'" sing N N 47 C OP2 HOP2 sing N N 48 C "O5'" "C5'" sing N N 49 C "C5'" "C4'" sing N N 50 C "C5'" "H5'" sing N N 51 C "C5'" "H5''" sing N N 52 C "C4'" "O4'" sing N N 53 C "C4'" "C3'" sing N N 54 C "C4'" "H4'" sing N N 55 C "O4'" "C1'" sing N N 56 C "C3'" "O3'" sing N N 57 C "C3'" "C2'" sing N N 58 C "C3'" "H3'" sing N N 59 C "O3'" "HO3'" sing N N 60 C "C2'" "O2'" sing N N 61 C "C2'" "C1'" sing N N 62 C "C2'" "H2'" sing N N 63 C "O2'" "HO2'" sing N N 64 C "C1'" N1 sing N N 65 C "C1'" "H1'" sing N N 66 C N1 C2 sing N N 67 C N1 C6 sing N N 68 C C2 O2 doub N N 69 C C2 N3 sing N N 70 C N3 C4 doub N N 71 C C4 N4 sing N N 72 C C4 C5 sing N N 73 C N4 H41 sing N N 74 C N4 H42 sing N N 75 C C5 C6 doub N N 76 C C5 H5 sing N N 77 C C6 H6 sing N N 78 G OP3 P sing N N 79 G OP3 HOP3 sing N N 80 G P OP1 doub N N 81 G P OP2 sing N N 82 G P "O5'" sing N N 83 G OP2 HOP2 sing N N 84 G "O5'" "C5'" sing N N 85 G "C5'" "C4'" sing N N 86 G "C5'" "H5'" sing N N 87 G "C5'" "H5''" sing N N 88 G "C4'" "O4'" sing N N 89 G "C4'" "C3'" sing N N 90 G "C4'" "H4'" sing N N 91 G "O4'" "C1'" sing N N 92 G "C3'" "O3'" sing N N 93 G "C3'" "C2'" sing N N 94 G "C3'" "H3'" sing N N 95 G "O3'" "HO3'" sing N N 96 G "C2'" "O2'" sing N N 97 G "C2'" "C1'" sing N N 98 G "C2'" "H2'" sing N N 99 G "O2'" "HO2'" sing N N 100 G "C1'" N9 sing N N 101 G "C1'" "H1'" sing N N 102 G N9 C8 sing Y N 103 G N9 C4 sing Y N 104 G C8 N7 doub Y N 105 G C8 H8 sing N N 106 G N7 C5 sing Y N 107 G C5 C6 sing N N 108 G C5 C4 doub Y N 109 G C6 O6 doub N N 110 G C6 N1 sing N N 111 G N1 C2 sing N N 112 G N1 H1 sing N N 113 G C2 N2 sing N N 114 G C2 N3 doub N N 115 G N2 H21 sing N N 116 G N2 H22 sing N N 117 G N3 C4 sing N N 118 U OP3 P sing N N 119 U OP3 HOP3 sing N N 120 U P OP1 doub N N 121 U P OP2 sing N N 122 U P "O5'" sing N N 123 U OP2 HOP2 sing N N 124 U "O5'" "C5'" sing N N 125 U "C5'" "C4'" sing N N 126 U "C5'" "H5'" sing N N 127 U "C5'" "H5''" sing N N 128 U "C4'" "O4'" sing N N 129 U "C4'" "C3'" sing N N 130 U "C4'" "H4'" sing N N 131 U "O4'" "C1'" sing N N 132 U "C3'" "O3'" sing N N 133 U "C3'" "C2'" sing N N 134 U "C3'" "H3'" sing N N 135 U "O3'" "HO3'" sing N N 136 U "C2'" "O2'" sing N N 137 U "C2'" "C1'" sing N N 138 U "C2'" "H2'" sing N N 139 U "O2'" "HO2'" sing N N 140 U "C1'" N1 sing N N 141 U "C1'" "H1'" sing N N 142 U N1 C2 sing N N 143 U N1 C6 sing N N 144 U C2 O2 doub N N 145 U C2 N3 sing N N 146 U N3 C4 sing N N 147 U N3 H3 sing N N 148 U C4 O4 doub N N 149 U C4 C5 sing N N 150 U C5 C6 doub N N 151 U C5 H5 sing N N 152 U C6 H6 sing N N 153 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7POF 'a-form double helix' 7POF 'hairpin loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 14 1_555 -0.670 0.034 -0.034 -1.278 1.080 -0.037 1 A_G1:C14_A A 1 ? A 14 ? 19 1 1 A G 2 1_555 A C 13 1_555 -0.455 -0.065 -0.027 -1.704 -4.894 3.249 2 A_G2:C13_A A 2 ? A 13 ? 19 1 1 A C 3 1_555 A G 12 1_555 0.456 -0.026 -0.055 1.106 -4.853 1.971 3 A_C3:G12_A A 3 ? A 12 ? 19 1 1 A G 4 1_555 A C 11 1_555 0.583 -0.043 -0.114 -3.016 -1.296 1.967 4 A_G4:C11_A A 4 ? A 11 ? 19 1 1 A C 5 1_555 A G 10 1_555 1.022 -0.404 -0.137 4.273 -3.136 3.193 5 A_C5:G10_A A 5 ? A 10 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 14 1_555 A G 2 1_555 A C 13 1_555 0.026 -1.880 3.189 -1.599 6.234 32.165 -4.318 -0.300 2.781 11.113 2.850 32.786 1 AA_G1G2:C13C14_AA A 1 ? A 14 ? A 2 ? A 13 ? 1 A G 2 1_555 A C 13 1_555 A C 3 1_555 A G 12 1_555 -0.070 -1.525 3.205 0.160 2.709 36.587 -2.780 0.133 3.088 4.308 -0.254 36.684 2 AA_G2C3:G12C13_AA A 2 ? A 13 ? A 3 ? A 12 ? 1 A C 3 1_555 A G 12 1_555 A G 4 1_555 A C 11 1_555 -0.048 -1.770 3.274 1.350 8.318 30.732 -4.641 0.317 2.710 15.337 -2.490 31.840 3 AA_C3G4:C11G12_AA A 3 ? A 12 ? A 4 ? A 11 ? 1 A G 4 1_555 A C 11 1_555 A C 5 1_555 A G 10 1_555 -0.049 -1.521 3.119 0.715 4.476 31.294 -3.555 0.213 2.878 8.243 -1.318 31.613 4 AA_G4C5:G10C11_AA A 4 ? A 11 ? A 5 ? A 10 ? # _pdbx_audit_support.funding_organization 'German Research Foundation (DFG)' _pdbx_audit_support.country Germany _pdbx_audit_support.grant_number 'SFB 1309-325871075' _pdbx_audit_support.ordinal 1 # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'AVANCE III' ? Bruker 950 cryoprobe 2 'AVANCE III' ? Bruker 900 cryoprobe # _atom_sites.entry_id 7POF _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_