HEADER CYTOKINE 13-SEP-21 7PPA TITLE HIGH RESOLUTION STRUCTURE OF BONE MORPHOGENETIC PROTEIN RECEPTOR TYPE TITLE 2 II (BMPRII) EXTRACELLULAR DOMAIN IN COMPLEX WITH BMP10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BONE MORPHOGENETIC PROTEIN 10; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BMP-10; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BONE MORPHOGENETIC PROTEIN RECEPTOR TYPE-2; COMPND 8 CHAIN: C, D; COMPND 9 SYNONYM: BMP TYPE-2 RECEPTOR,BMPR-2,BONE MORPHOGENETIC PROTEIN COMPND 10 RECEPTOR TYPE II,BMP TYPE II RECEPTOR,BMPR-II; COMPND 11 EC: 2.7.11.30; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BMP10; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK EBNA; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: BMPR2, PPH1; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BMPRII BMP10 TGF-BETA LIGAND AND RECEPTOR SIGNALLING COMPLEX, KEYWDS 2 CYTOKINE EXPDTA X-RAY DIFFRACTION AUTHOR J.GUO,M.YU,R.J.READ,W.LI REVDAT 2 31-JAN-24 7PPA 1 REMARK REVDAT 1 11-MAY-22 7PPA 0 JRNL AUTH J.GUO,B.LIU,M.THORIKAY,M.YU,X.LI,Z.TONG,R.M.SALMON,R.J.READ, JRNL AUTH 2 P.TEN DIJKE,N.W.MORRELL,W.LI JRNL TITL CRYSTAL STRUCTURES OF BMPRII EXTRACELLULAR DOMAIN IN BINARY JRNL TITL 2 AND TERNARY RECEPTOR COMPLEXES WITH BMP10. JRNL REF NAT COMMUN V. 13 2395 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35504921 JRNL DOI 10.1038/S41467-022-30111-2 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 125.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 89655 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.889 REMARK 3 FREE R VALUE TEST SET COUNT : 4383 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.52 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6144 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 345 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3165 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 352 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.65100 REMARK 3 B22 (A**2) : -0.49200 REMARK 3 B33 (A**2) : 1.14300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.062 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.064 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.660 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3404 ; 0.015 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3055 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4655 ; 1.871 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7117 ; 1.548 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 437 ; 7.214 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;30.476 ;23.379 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 546 ;13.874 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;12.814 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 454 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4414 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 737 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 630 ; 0.229 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 98 ; 0.204 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1606 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 275 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1718 ; 7.194 ; 3.318 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1717 ; 7.196 ; 3.315 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2159 ; 7.681 ; 4.930 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2160 ; 7.680 ; 4.934 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1686 ;10.351 ; 3.739 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1687 ;10.348 ; 3.741 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2494 ;10.452 ; 5.400 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2495 ;10.450 ; 5.402 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2687 ;15.342 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 321 A 423 NULL REMARK 3 2 B 321 B 423 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 4 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 3 C 29 C 133 NULL REMARK 3 4 D 29 D 139 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7PPA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1292117719. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91589 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 1.14.5 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89787 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 125.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 11.70 REMARK 200 R MERGE FOR SHELL (I) : 1.85000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 6SF3, 2HLQ REMARK 200 REMARK 200 REMARK: THICK PLATE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG 3350 0.19 M AMMONIUM CITRATE REMARK 280 DIBASIC 0.02 M SODIUM CITRATE TRIBASIC DIHYDRATE, PH 5.8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.35900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 125.04250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.61400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 125.04250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.35900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.61400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 317 REMARK 465 ALA A 318 REMARK 465 LYS A 319 REMARK 465 GLY A 320 REMARK 465 ASN B 317 REMARK 465 ALA B 318 REMARK 465 LYS B 319 REMARK 465 TYR C 40 REMARK 465 GLN C 41 REMARK 465 GLN C 42 REMARK 465 ASP C 43 REMARK 465 LEU C 44 REMARK 465 GLY C 45 REMARK 465 ILE C 46 REMARK 465 GLY C 47 REMARK 465 GLU C 48 REMARK 465 SER C 49 REMARK 465 PRO C 141 REMARK 465 PRO C 142 REMARK 465 HIS C 143 REMARK 465 SER C 144 REMARK 465 PHE C 145 REMARK 465 ASN C 146 REMARK 465 ARG C 147 REMARK 465 ASP C 148 REMARK 465 GLU C 149 REMARK 465 THR C 150 REMARK 465 GLY D 26 REMARK 465 SER D 27 REMARK 465 GLN D 28 REMARK 465 GLN D 42 REMARK 465 ASP D 43 REMARK 465 LEU D 44 REMARK 465 GLY D 45 REMARK 465 ILE D 46 REMARK 465 GLY D 47 REMARK 465 GLU D 48 REMARK 465 SER D 49 REMARK 465 ASN D 130 REMARK 465 PHE D 131 REMARK 465 PRO D 132 REMARK 465 PRO D 133 REMARK 465 PRO D 134 REMARK 465 ASP D 135 REMARK 465 PRO D 141 REMARK 465 PRO D 142 REMARK 465 HIS D 143 REMARK 465 SER D 144 REMARK 465 PHE D 145 REMARK 465 ASN D 146 REMARK 465 ARG D 147 REMARK 465 ASP D 148 REMARK 465 GLU D 149 REMARK 465 THR D 150 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN D 29 OD1 ND2 REMARK 470 ARG D 50 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 54 CG CD OE1 OE2 REMARK 470 LYS D 72 CG CD CE NZ REMARK 470 LYS D 74 CD CE NZ REMARK 470 HIS D 87 ND1 CD2 CE1 NE2 REMARK 470 ILE D 88 CG1 CG2 CD1 REMARK 470 ASP D 90 CG OD1 OD2 REMARK 470 GLN D 92 CG CD OE1 NE2 REMARK 470 GLU D 93 CG CD OE1 OE2 REMARK 470 HIS D 95 CG ND1 CD2 CE1 NE2 REMARK 470 TYR D 96 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU D 98 CG CD OE1 OE2 REMARK 470 THR D 102 OG1 CG2 REMARK 470 THR D 103 OG1 CG2 REMARK 470 THR D 104 OG1 CG2 REMARK 470 ILE D 108 CG1 CG2 CD1 REMARK 470 GLN D 109 CG CD OE1 NE2 REMARK 470 ASN D 110 CG OD1 ND2 REMARK 470 THR D 112 CG2 REMARK 470 THR D 128 CG2 REMARK 470 THR D 136 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 333 O HOH A 502 1.51 REMARK 500 H THR C 137 O SER C 140 1.56 REMARK 500 OD2 ASP A 338 O HOH A 501 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 348 CD GLU A 348 OE1 -0.081 REMARK 500 GLU A 351 CD GLU A 351 OE1 -0.067 REMARK 500 SER C 140 C SER C 140 O 0.170 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 408 CA - CB - CG2 ANGL. DEV. = -8.6 DEGREES REMARK 500 ARG B 424 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG C 32 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 350 173.41 63.13 REMARK 500 TYR B 350 171.16 63.20 REMARK 500 ASP C 38 69.70 -178.55 REMARK 500 LYS C 74 -125.50 58.15 REMARK 500 ASP C 90 61.96 34.17 REMARK 500 ASP D 38 96.31 -164.04 REMARK 500 GLN D 109 58.38 38.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASP C 135 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 7PPA A 317 424 UNP O95393 BMP10_HUMAN 317 424 DBREF 7PPA B 317 424 UNP O95393 BMP10_HUMAN 317 424 DBREF 7PPA C 27 150 UNP Q13873 BMPR2_HUMAN 27 150 DBREF 7PPA D 27 150 UNP Q13873 BMPR2_HUMAN 27 150 SEQADV 7PPA GLY C 26 UNP Q13873 EXPRESSION TAG SEQADV 7PPA GLY D 26 UNP Q13873 EXPRESSION TAG SEQRES 1 A 108 ASN ALA LYS GLY ASN TYR CYS LYS ARG THR PRO LEU TYR SEQRES 2 A 108 ILE ASP PHE LYS GLU ILE GLY TRP ASP SER TRP ILE ILE SEQRES 3 A 108 ALA PRO PRO GLY TYR GLU ALA TYR GLU CYS ARG GLY VAL SEQRES 4 A 108 CYS ASN TYR PRO LEU ALA GLU HIS LEU THR PRO THR LYS SEQRES 5 A 108 HIS ALA ILE ILE GLN ALA LEU VAL HIS LEU LYS ASN SER SEQRES 6 A 108 GLN LYS ALA SER LYS ALA CYS CYS VAL PRO THR LYS LEU SEQRES 7 A 108 GLU PRO ILE SER ILE LEU TYR LEU ASP LYS GLY VAL VAL SEQRES 8 A 108 THR TYR LYS PHE LYS TYR GLU GLY MET ALA VAL SER GLU SEQRES 9 A 108 CYS GLY CYS ARG SEQRES 1 B 108 ASN ALA LYS GLY ASN TYR CYS LYS ARG THR PRO LEU TYR SEQRES 2 B 108 ILE ASP PHE LYS GLU ILE GLY TRP ASP SER TRP ILE ILE SEQRES 3 B 108 ALA PRO PRO GLY TYR GLU ALA TYR GLU CYS ARG GLY VAL SEQRES 4 B 108 CYS ASN TYR PRO LEU ALA GLU HIS LEU THR PRO THR LYS SEQRES 5 B 108 HIS ALA ILE ILE GLN ALA LEU VAL HIS LEU LYS ASN SER SEQRES 6 B 108 GLN LYS ALA SER LYS ALA CYS CYS VAL PRO THR LYS LEU SEQRES 7 B 108 GLU PRO ILE SER ILE LEU TYR LEU ASP LYS GLY VAL VAL SEQRES 8 B 108 THR TYR LYS PHE LYS TYR GLU GLY MET ALA VAL SER GLU SEQRES 9 B 108 CYS GLY CYS ARG SEQRES 1 C 125 GLY SER GLN ASN GLN GLU ARG LEU CYS ALA PHE LYS ASP SEQRES 2 C 125 PRO TYR GLN GLN ASP LEU GLY ILE GLY GLU SER ARG ILE SEQRES 3 C 125 SER HIS GLU ASN GLY THR ILE LEU CYS SER LYS GLY SER SEQRES 4 C 125 THR CYS TYR GLY LEU TRP GLU LYS SER LYS GLY ASP ILE SEQRES 5 C 125 ASN LEU VAL LYS GLN GLY CYS TRP SER HIS ILE GLY ASP SEQRES 6 C 125 PRO GLN GLU CYS HIS TYR GLU GLU CYS VAL VAL THR THR SEQRES 7 C 125 THR PRO PRO SER ILE GLN ASN GLY THR TYR ARG PHE CYS SEQRES 8 C 125 CYS CYS SER THR ASP LEU CYS ASN VAL ASN PHE THR GLU SEQRES 9 C 125 ASN PHE PRO PRO PRO ASP THR THR PRO LEU SER PRO PRO SEQRES 10 C 125 HIS SER PHE ASN ARG ASP GLU THR SEQRES 1 D 125 GLY SER GLN ASN GLN GLU ARG LEU CYS ALA PHE LYS ASP SEQRES 2 D 125 PRO TYR GLN GLN ASP LEU GLY ILE GLY GLU SER ARG ILE SEQRES 3 D 125 SER HIS GLU ASN GLY THR ILE LEU CYS SER LYS GLY SER SEQRES 4 D 125 THR CYS TYR GLY LEU TRP GLU LYS SER LYS GLY ASP ILE SEQRES 5 D 125 ASN LEU VAL LYS GLN GLY CYS TRP SER HIS ILE GLY ASP SEQRES 6 D 125 PRO GLN GLU CYS HIS TYR GLU GLU CYS VAL VAL THR THR SEQRES 7 D 125 THR PRO PRO SER ILE GLN ASN GLY THR TYR ARG PHE CYS SEQRES 8 D 125 CYS CYS SER THR ASP LEU CYS ASN VAL ASN PHE THR GLU SEQRES 9 D 125 ASN PHE PRO PRO PRO ASP THR THR PRO LEU SER PRO PRO SEQRES 10 D 125 HIS SER PHE ASN ARG ASP GLU THR HET GOL C 201 14 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *352(H2 O) HELIX 1 AA1 ALA A 361 THR A 365 5 5 HELIX 2 AA2 THR A 367 ASN A 380 1 14 HELIX 3 AA3 ALA B 361 THR B 365 5 5 HELIX 4 AA4 THR B 367 ASN B 380 1 14 HELIX 5 AA5 PRO C 91 TYR C 96 5 6 HELIX 6 AA6 SER C 107 THR C 112 1 6 HELIX 7 AA7 LEU C 122 ASN C 126 5 5 HELIX 8 AA8 PRO D 91 HIS D 95 5 5 HELIX 9 AA9 SER D 107 THR D 112 1 6 HELIX 10 AB1 LEU D 122 ASN D 126 5 5 SHEET 1 AA1 2 LYS A 324 THR A 326 0 SHEET 2 AA1 2 GLU A 351 ARG A 353 -1 O GLU A 351 N THR A 326 SHEET 1 AA2 2 TYR A 329 ASP A 331 0 SHEET 2 AA2 2 GLY A 346 GLU A 348 -1 O TYR A 347 N ILE A 330 SHEET 1 AA3 3 ILE A 341 ALA A 343 0 SHEET 2 AA3 3 CYS A 389 ASP A 403 -1 O LEU A 400 N ALA A 343 SHEET 3 AA3 3 VAL A 406 CYS A 423 -1 O TYR A 413 N ILE A 397 SHEET 1 AA4 2 LYS B 324 THR B 326 0 SHEET 2 AA4 2 GLU B 351 ARG B 353 -1 O GLU B 351 N THR B 326 SHEET 1 AA5 2 TYR B 329 ASP B 331 0 SHEET 2 AA5 2 GLY B 346 GLU B 348 -1 O TYR B 347 N ILE B 330 SHEET 1 AA6 3 ILE B 341 ALA B 343 0 SHEET 2 AA6 3 CYS B 389 ASP B 403 -1 O LEU B 400 N ALA B 343 SHEET 3 AA6 3 VAL B 406 CYS B 423 -1 O ALA B 417 N GLU B 395 SHEET 1 AA7 2 ARG C 32 ALA C 35 0 SHEET 2 AA7 2 THR C 57 CYS C 60 -1 O CYS C 60 N ARG C 32 SHEET 1 AA8 3 ASP C 76 TRP C 85 0 SHEET 2 AA8 3 THR C 65 SER C 73 -1 N LEU C 69 O LYS C 81 SHEET 3 AA8 3 TYR C 113 CYS C 118 -1 O ARG C 114 N TRP C 70 SHEET 1 AA9 2 VAL C 100 VAL C 101 0 SHEET 2 AA9 2 THR C 128 GLU C 129 1 O THR C 128 N VAL C 101 SHEET 1 AB1 3 LEU D 33 ALA D 35 0 SHEET 2 AB1 3 THR D 57 LEU D 59 -1 O ILE D 58 N CYS D 34 SHEET 3 AB1 3 ILE D 51 SER D 52 -1 N SER D 52 O THR D 57 SHEET 1 AB2 3 ASP D 76 TRP D 85 0 SHEET 2 AB2 3 THR D 65 SER D 73 -1 N LEU D 69 O VAL D 80 SHEET 3 AB2 3 TYR D 113 CYS D 118 -1 O ARG D 114 N TRP D 70 SSBOND 1 CYS A 323 CYS A 389 1555 1555 2.06 SSBOND 2 CYS A 352 CYS A 421 1555 1555 2.05 SSBOND 3 CYS A 356 CYS A 423 1555 1555 2.11 SSBOND 4 CYS A 388 CYS B 388 1555 1555 2.02 SSBOND 5 CYS B 323 CYS B 389 1555 1555 2.09 SSBOND 6 CYS B 352 CYS B 421 1555 1555 2.05 SSBOND 7 CYS B 356 CYS B 423 1555 1555 2.11 SSBOND 8 CYS C 34 CYS C 66 1555 1555 2.03 SSBOND 9 CYS C 60 CYS C 84 1555 1555 2.02 SSBOND 10 CYS C 94 CYS C 117 1555 1555 2.00 SSBOND 11 CYS C 99 CYS C 116 1555 1555 2.11 SSBOND 12 CYS C 118 CYS C 123 1555 1555 2.07 SSBOND 13 CYS D 34 CYS D 66 1555 1555 2.04 SSBOND 14 CYS D 60 CYS D 84 1555 1555 2.01 SSBOND 15 CYS D 94 CYS D 117 1555 1555 2.07 SSBOND 16 CYS D 99 CYS D 116 1555 1555 2.02 SSBOND 17 CYS D 118 CYS D 123 1555 1555 1.99 CISPEP 1 ALA A 343 PRO A 344 0 -2.15 CISPEP 2 TYR A 358 PRO A 359 0 -3.49 CISPEP 3 ALA B 343 PRO B 344 0 -0.54 CISPEP 4 TYR B 358 PRO B 359 0 -5.97 CRYST1 44.718 47.228 250.085 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022362 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021174 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003999 0.00000