HEADER TRANSCRIPTION 14-SEP-21 7PPP TITLE CRYSTAL STRUCTURE OF ZAD-DOMAIN OF ZNF_276 PROTEIN FROM RABBIT. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN 276; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 GENE: ZNF276; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ZINC-FINGER ASSOCIATED DOMAIN, ZAD, PROTEIN INTERACTION, KEYWDS 2 DIMERIZATION, M1BP, 9797, ZINC BINDING, TREBLE-CLEFT-LIKE, KEYWDS 3 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR K.M.BOYKO,A.N.BONCHUK,A.Y.NIKOLAEVA,P.G.GEORGIEV,V.O.POPOV REVDAT 5 19-JUN-24 7PPP 1 REMARK REVDAT 4 20-JUL-22 7PPP 1 JRNL REVDAT 3 01-JUN-22 7PPP 1 JRNL REVDAT 2 09-FEB-22 7PPP 1 SOURCE REMARK HELIX SHEET REVDAT 2 2 1 LINK SCALE ATOM REVDAT 1 08-DEC-21 7PPP 0 JRNL AUTH A.N.BONCHUK,K.M.BOYKO,A.Y.NIKOLAEVA,A.D.BURTSEVA,V.O.POPOV, JRNL AUTH 2 P.G.GEORGIEV JRNL TITL STRUCTURAL INSIGHTS INTO HIGHLY SIMILAR SPATIAL ORGANIZATION JRNL TITL 2 OF ZINC-FINGER ASSOCIATED DOMAINS WITH A VERY LOW SEQUENCE JRNL TITL 3 SIMILARITY. JRNL REF STRUCTURE V. 30 1004 2022 JRNL REFN ISSN 0969-2126 JRNL PMID 35580610 JRNL DOI 10.1016/J.STR.2022.04.009 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 6459 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.290 REMARK 3 FREE R VALUE : 0.340 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.429 REMARK 3 FREE R VALUE TEST SET COUNT : 609 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 414 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.3970 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.5150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 977 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 108.3 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 99.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.52600 REMARK 3 B22 (A**2) : 0.52600 REMARK 3 B33 (A**2) : -1.70600 REMARK 3 B12 (A**2) : 0.26300 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.620 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.419 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.360 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 39.303 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.886 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.877 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1007 ; 0.018 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 858 ; 0.004 ; 0.014 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1363 ; 2.922 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1937 ; 1.467 ; 1.583 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 130 ;10.503 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 53 ;29.911 ;20.189 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 127 ;23.432 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;17.116 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 129 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1178 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 258 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 183 ; 0.161 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 23 ; 0.165 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 418 ; 0.137 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 15 ; 0.209 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 532 ; 7.761 ; 8.024 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 531 ; 7.766 ; 8.019 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 658 ;11.596 ;12.021 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 659 ;11.588 ;12.026 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 475 ; 9.420 ; 8.021 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 476 ; 9.413 ; 8.023 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 705 ;11.897 ;11.945 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 705 ;11.890 ;11.945 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 86 NULL REMARK 3 1 B 3 B 86 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 87 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5988 42.8139 7.4480 REMARK 3 T TENSOR REMARK 3 T11: 0.0845 T22: 0.2676 REMARK 3 T33: 0.2772 T12: -0.0642 REMARK 3 T13: 0.0053 T23: 0.1119 REMARK 3 L TENSOR REMARK 3 L11: 4.8428 L22: 2.3387 REMARK 3 L33: 3.1404 L12: -2.9772 REMARK 3 L13: 0.4948 L23: -1.2092 REMARK 3 S TENSOR REMARK 3 S11: -0.1722 S12: -0.4599 S13: -0.7261 REMARK 3 S21: 0.1006 S22: 0.1307 S23: 0.6062 REMARK 3 S31: 0.0017 S32: 0.4157 S33: 0.0415 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 87 REMARK 3 ORIGIN FOR THE GROUP (A): 6.6206 34.7796 -4.0069 REMARK 3 T TENSOR REMARK 3 T11: 0.2646 T22: 0.2762 REMARK 3 T33: 0.7413 T12: 0.0437 REMARK 3 T13: -0.0935 T23: -0.1905 REMARK 3 L TENSOR REMARK 3 L11: 4.6553 L22: 1.6010 REMARK 3 L33: 3.0966 L12: -0.9888 REMARK 3 L13: -2.1330 L23: -1.2215 REMARK 3 S TENSOR REMARK 3 S11: -0.0566 S12: 0.2999 S13: -1.5943 REMARK 3 S21: -0.5687 S22: -0.3136 S23: 0.6875 REMARK 3 S31: 0.7711 S32: 0.0282 S33: 0.3701 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7PPP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1292118124. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87313, 1.282 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6460 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 49.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 11.04 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 11.59 REMARK 200 R MERGE FOR SHELL (I) : 1.36300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.870 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BICINE PH 8.5, PEG 20000 5%, REMARK 280 DEXTRANE SULFATE 5%, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 67.16000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 67.16000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.16000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 67.16000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 67.16000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 67.16000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ARG A 22 REMARK 465 ALA A 23 REMARK 465 SER A 24 REMARK 465 GLY A 25 REMARK 465 ASP A 26 REMARK 465 SER A 27 REMARK 465 ALA A 28 REMARK 465 GLU A 29 REMARK 465 ARG A 30 REMARK 465 PRO A 31 REMARK 465 PHE A 32 REMARK 465 PRO A 33 REMARK 465 SER B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 SER B 13 REMARK 465 ARG B 14 REMARK 465 SER B 15 REMARK 465 LEU B 16 REMARK 465 ARG B 17 REMARK 465 SER B 18 REMARK 465 ILE B 19 REMARK 465 SER B 20 REMARK 465 ASP B 21 REMARK 465 ARG B 22 REMARK 465 ALA B 23 REMARK 465 SER B 24 REMARK 465 GLY B 25 REMARK 465 ASP B 26 REMARK 465 SER B 27 REMARK 465 ALA B 28 REMARK 465 GLU B 29 REMARK 465 ARG B 30 REMARK 465 PRO B 31 REMARK 465 PHE B 32 REMARK 465 PRO B 33 REMARK 465 GLY B 34 REMARK 465 GLU B 35 REMARK 465 ARG B 36 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 5 CZ NH1 NH2 REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 SER A 12 OG REMARK 470 SER A 13 OG REMARK 470 ARG A 14 CG CD NE CZ NH1 NH2 REMARK 470 SER A 15 OG REMARK 470 LEU A 16 CG CD1 CD2 REMARK 470 ARG A 17 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 19 CG1 CG2 CD1 REMARK 470 SER A 20 OG REMARK 470 ASP A 21 CG OD1 OD2 REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 VAL A 39 CG1 CG2 REMARK 470 VAL A 50 CG1 CG2 REMARK 470 GLN A 52 CG CD OE1 NE2 REMARK 470 PHE A 59 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 85 OG REMARK 470 MET A 87 CG SD CE REMARK 470 LYS B 10 CG CD CE NZ REMARK 470 PHE B 11 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER B 12 OG REMARK 470 PHE B 38 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL B 39 CG1 CG2 REMARK 470 ARG B 40 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 52 CG CD OE1 NE2 REMARK 470 GLN B 58 CG CD OE1 NE2 REMARK 470 PHE B 59 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL B 60 CG1 CG2 REMARK 470 ARG B 62 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 76 CG CD OE1 OE2 REMARK 470 ASN B 83 CG OD1 ND2 REMARK 470 MET B 87 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 61 SG CYS B 64 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 61 CB CYS A 61 SG -0.110 REMARK 500 HIS B 3 N HIS B 3 CA 0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 4 CA - CB - SG ANGL. DEV. = 9.2 DEGREES REMARK 500 ASP B 53 CB - CA - C ANGL. DEV. = 13.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 8 -12.42 81.98 REMARK 500 SER A 12 -113.61 -65.62 REMARK 500 SER A 13 60.40 -103.76 REMARK 500 ILE A 19 124.61 172.03 REMARK 500 GLU A 35 -68.06 -100.92 REMARK 500 HIS B 8 66.60 70.40 REMARK 500 PHE B 11 -142.22 -139.36 REMARK 500 GLN B 52 65.28 -111.87 REMARK 500 PRO B 86 88.72 -51.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 86 MET A 87 -149.41 REMARK 500 PHE B 11 SER B 12 149.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 4 SG REMARK 620 2 CYS A 7 SG 125.0 REMARK 620 3 CYS A 61 SG 85.7 120.9 REMARK 620 4 CYS A 64 SG 121.6 103.3 96.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 4 SG REMARK 620 2 CYS B 7 SG 91.4 REMARK 620 3 CYS B 61 SG 107.9 159.6 REMARK 620 4 CYS B 64 SG 77.2 123.6 57.3 REMARK 620 N 1 2 3 DBREF1 7PPP A 1 87 UNP A0A5F9DAT3_RABIT DBREF2 7PPP A A0A5F9DAT3 126 212 DBREF1 7PPP B 1 87 UNP A0A5F9DAT3_RABIT DBREF2 7PPP B A0A5F9DAT3 126 212 SEQADV 7PPP SER A -2 UNP A0A5F9DAT EXPRESSION TAG SEQADV 7PPP GLY A -1 UNP A0A5F9DAT EXPRESSION TAG SEQADV 7PPP SER A 0 UNP A0A5F9DAT EXPRESSION TAG SEQADV 7PPP SER B -2 UNP A0A5F9DAT EXPRESSION TAG SEQADV 7PPP GLY B -1 UNP A0A5F9DAT EXPRESSION TAG SEQADV 7PPP SER B 0 UNP A0A5F9DAT EXPRESSION TAG SEQRES 1 A 90 SER GLY SER MET GLY HIS CYS ARG LEU CYS HIS GLY LYS SEQRES 2 A 90 PHE SER SER ARG SER LEU ARG SER ILE SER ASP ARG ALA SEQRES 3 A 90 SER GLY ASP SER ALA GLU ARG PRO PHE PRO GLY GLU ARG SEQRES 4 A 90 VAL PHE VAL ARG ASP PHE GLN ARG LEU LEU GLY VAL ALA SEQRES 5 A 90 VAL HIS GLN ASP PRO ALA LEU SER GLN PHE VAL CYS ARG SEQRES 6 A 90 ASN CYS HIS ALA GLN PHE TYR GLN CYS HIS SER LEU LEU SEQRES 7 A 90 GLU SER PHE LEU GLN ARG VAL ASN VAL SER PRO MET SEQRES 1 B 90 SER GLY SER MET GLY HIS CYS ARG LEU CYS HIS GLY LYS SEQRES 2 B 90 PHE SER SER ARG SER LEU ARG SER ILE SER ASP ARG ALA SEQRES 3 B 90 SER GLY ASP SER ALA GLU ARG PRO PHE PRO GLY GLU ARG SEQRES 4 B 90 VAL PHE VAL ARG ASP PHE GLN ARG LEU LEU GLY VAL ALA SEQRES 5 B 90 VAL HIS GLN ASP PRO ALA LEU SER GLN PHE VAL CYS ARG SEQRES 6 B 90 ASN CYS HIS ALA GLN PHE TYR GLN CYS HIS SER LEU LEU SEQRES 7 B 90 GLU SER PHE LEU GLN ARG VAL ASN VAL SER PRO MET HET ZN A 101 1 HET ZN B 101 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) HELIX 1 AA1 VAL A 37 GLY A 47 1 11 HELIX 2 AA2 ARG A 62 VAL A 82 1 21 HELIX 3 AA3 PHE B 38 GLY B 47 1 10 HELIX 4 AA4 CYS B 61 ASN B 83 1 23 SHEET 1 AA1 2 SER A 15 ARG A 17 0 SHEET 2 AA1 2 PHE A 59 CYS A 61 -1 O VAL A 60 N LEU A 16 LINK SG CYS A 4 ZN ZN A 101 1555 1555 2.23 LINK SG CYS A 7 ZN ZN A 101 1555 1555 2.27 LINK SG CYS A 61 ZN ZN A 101 1555 1555 2.27 LINK SG CYS A 64 ZN ZN A 101 1555 1555 2.32 LINK SG CYS B 4 ZN ZN B 101 1555 1555 2.32 LINK SG CYS B 7 ZN ZN B 101 1555 1555 2.18 LINK SG CYS B 61 ZN ZN B 101 1555 1555 2.30 LINK SG CYS B 64 ZN ZN B 101 1555 1555 2.22 CRYST1 82.940 82.940 134.320 90.00 90.00 120.00 P 63 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012057 0.006961 0.000000 0.00000 SCALE2 0.000000 0.013922 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007445 0.00000