HEADER PROTEIN TRANSPORT 16-SEP-21 7PQ4 TITLE NMR STRUCTURE OF RGPB C-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGININE-SPECIFIC CYSTEINE PROTEINASE (ARG-GINGIPAIN); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORPHYROMONAS GINGIVALIS; SOURCE 3 ORGANISM_TAXID: 837; SOURCE 4 ATCC: 53978; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET46 KEYWDS T9SS, IG-LIKE, GINGIPAIN, CTD, PROTEIN TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.J.DORGAN,M.A.CURTIS,J.A.GARNETT REVDAT 4 19-JUN-24 7PQ4 1 REMARK REVDAT 3 10-MAY-23 7PQ4 1 JRNL REVDAT 2 03-MAY-23 7PQ4 1 JRNL REVDAT 1 28-SEP-22 7PQ4 0 JRNL AUTH B.DORGAN,Y.LIU,S.WANG,J.ADUSE-OPOKU,S.B.WHITTAKER, JRNL AUTH 2 M.A.J.ROBERTS,C.D.LORENZ,M.A.CURTIS,J.A.GARNETT JRNL TITL STRUCTURAL MODEL OF A PORPHYROMONAS GINGIVALIS TYPE IX JRNL TITL 2 SECRETION SYSTEM SHUTTLE COMPLEX. JRNL REF J.MOL.BIOL. V. 434 67871 2022 JRNL REFN ESSN 1089-8638 JRNL PMID 36404438 JRNL DOI 10.1016/J.JMB.2022.167871 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7PQ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1292117756. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 70 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] RGPB-CTD REMARK 210 (G662-K736), 20 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 2 MM SODIUM AZIDE, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCACO; 3D HNCACB; 3D CBCA(CO)NH; REMARK 210 3D H(CCO)NH; 3D C(CO)NH; 3D REMARK 210 HCCH-TOCSY; 3D CCH-TOCSY; REMARK 210 HBCBCGCDHD; HBCBCGCDCEHE; 3D 1H- REMARK 210 13C NOESY; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 2.3, CCPNMR ANALYSIS, REMARK 210 DANGLE 1.1.1, WHAT IF, NMRPIPE, REMARK 210 NMRDRAW REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 658 95.96 57.12 REMARK 500 1 ASP A 659 104.31 59.83 REMARK 500 1 ALA A 666 104.23 60.69 REMARK 500 1 ALA A 669 65.20 -158.98 REMARK 500 1 ALA A 689 80.10 56.49 REMARK 500 1 ASN A 707 -82.44 63.32 REMARK 500 1 GLU A 725 93.04 -61.37 REMARK 500 2 HIS A 649 80.48 58.20 REMARK 500 2 HIS A 652 98.59 58.93 REMARK 500 2 ASP A 659 -42.15 -132.15 REMARK 500 2 THR A 663 78.01 56.64 REMARK 500 2 SER A 664 -156.85 -166.68 REMARK 500 2 ALA A 669 -5.82 -157.74 REMARK 500 2 ASN A 670 -86.95 59.51 REMARK 500 2 ALA A 689 76.74 54.09 REMARK 500 2 ASP A 696 -174.74 -65.61 REMARK 500 2 ASN A 707 -89.57 59.66 REMARK 500 2 ASN A 715 91.15 -61.80 REMARK 500 2 GLU A 725 49.33 -83.37 REMARK 500 3 ALA A 648 16.31 -164.30 REMARK 500 3 HIS A 649 -85.72 60.46 REMARK 500 3 HIS A 650 -25.09 -158.77 REMARK 500 3 HIS A 654 -21.29 -154.39 REMARK 500 3 ASP A 658 82.85 57.39 REMARK 500 3 ASP A 659 -176.48 59.07 REMARK 500 3 MET A 661 -52.97 -172.82 REMARK 500 3 SER A 664 -177.62 59.92 REMARK 500 3 ILE A 665 -78.72 65.51 REMARK 500 3 ALA A 666 2.95 -152.77 REMARK 500 3 ASP A 671 102.41 -161.54 REMARK 500 3 SER A 687 93.00 -164.42 REMARK 500 3 ASN A 707 -90.72 57.40 REMARK 500 3 GLN A 714 -166.47 -103.98 REMARK 500 4 HIS A 649 103.80 61.69 REMARK 500 4 HIS A 650 92.81 59.90 REMARK 500 4 HIS A 652 -24.74 -162.74 REMARK 500 4 ASP A 656 86.97 -165.84 REMARK 500 4 ASP A 658 -61.44 -142.22 REMARK 500 4 ASP A 659 -41.87 -136.08 REMARK 500 4 LYS A 660 -177.13 -64.81 REMARK 500 4 ALA A 666 102.00 62.87 REMARK 500 4 ALA A 669 79.18 -171.14 REMARK 500 4 ASN A 670 -39.52 -148.45 REMARK 500 4 ASP A 671 -69.84 -98.48 REMARK 500 4 SER A 687 85.64 -151.95 REMARK 500 4 ASN A 707 -89.69 61.06 REMARK 500 4 GLU A 725 88.27 -69.03 REMARK 500 5 HIS A 649 16.31 -163.36 REMARK 500 5 HIS A 650 -89.39 58.92 REMARK 500 5 HIS A 651 -32.80 -160.78 REMARK 500 REMARK 500 THIS ENTRY HAS 241 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34666 RELATED DB: BMRB REMARK 900 NMR STRUCTURE OF RGPB C-TERMINAL DOMAIN DBREF 7PQ4 A 662 736 UNP Q51844 Q51844_PORGN 662 736 SEQADV 7PQ4 MET A 647 UNP Q51844 INITIATING METHIONINE SEQADV 7PQ4 ALA A 648 UNP Q51844 EXPRESSION TAG SEQADV 7PQ4 HIS A 649 UNP Q51844 EXPRESSION TAG SEQADV 7PQ4 HIS A 650 UNP Q51844 EXPRESSION TAG SEQADV 7PQ4 HIS A 651 UNP Q51844 EXPRESSION TAG SEQADV 7PQ4 HIS A 652 UNP Q51844 EXPRESSION TAG SEQADV 7PQ4 HIS A 653 UNP Q51844 EXPRESSION TAG SEQADV 7PQ4 HIS A 654 UNP Q51844 EXPRESSION TAG SEQADV 7PQ4 VAL A 655 UNP Q51844 EXPRESSION TAG SEQADV 7PQ4 ASP A 656 UNP Q51844 EXPRESSION TAG SEQADV 7PQ4 ASP A 657 UNP Q51844 EXPRESSION TAG SEQADV 7PQ4 ASP A 658 UNP Q51844 EXPRESSION TAG SEQADV 7PQ4 ASP A 659 UNP Q51844 EXPRESSION TAG SEQADV 7PQ4 LYS A 660 UNP Q51844 EXPRESSION TAG SEQADV 7PQ4 MET A 661 UNP Q51844 EXPRESSION TAG SEQRES 1 A 90 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 A 90 LYS MET GLY THR SER ILE ALA ASP VAL ALA ASN ASP LYS SEQRES 3 A 90 PRO TYR THR VAL ALA VAL SER GLY LYS THR ILE THR VAL SEQRES 4 A 90 GLU SER PRO ALA ALA GLY LEU THR ILE PHE ASP MET ASN SEQRES 5 A 90 GLY ARG ARG VAL ALA THR ALA LYS ASN ARG MET VAL PHE SEQRES 6 A 90 GLU ALA GLN ASN GLY VAL TYR ALA VAL ARG ILE ALA THR SEQRES 7 A 90 GLU GLY LYS THR TYR THR GLU LYS VAL ILE VAL LYS SHEET 1 AA1 3 THR A 675 SER A 679 0 SHEET 2 AA1 3 THR A 682 PHE A 695 -1 O GLU A 686 N THR A 675 SHEET 3 AA1 3 ARG A 701 GLU A 712 -1 O ASN A 707 N ALA A 690 SHEET 1 AA2 4 THR A 675 SER A 679 0 SHEET 2 AA2 4 THR A 682 PHE A 695 -1 O GLU A 686 N THR A 675 SHEET 3 AA2 4 ALA A 719 ALA A 723 -1 O ALA A 723 N GLY A 691 SHEET 4 AA2 4 THR A 728 GLU A 731 -1 O GLU A 731 N VAL A 720 SHEET 1 AA3 2 GLY A 716 VAL A 717 0 SHEET 2 AA3 2 ILE A 734 VAL A 735 -1 O VAL A 735 N GLY A 716 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 TER 1379 LYS A 736 ENDMDL MODEL 2 TER 1379 LYS A 736 ENDMDL MODEL 3 TER 1379 LYS A 736 ENDMDL MODEL 4 TER 1379 LYS A 736 ENDMDL MODEL 5 TER 1379 LYS A 736 ENDMDL MODEL 6 TER 1379 LYS A 736 ENDMDL MODEL 7 TER 1379 LYS A 736 ENDMDL MODEL 8 TER 1379 LYS A 736 ENDMDL MODEL 9 TER 1379 LYS A 736 ENDMDL MODEL 10 TER 1379 LYS A 736 ENDMDL MODEL 11 TER 1379 LYS A 736 ENDMDL MODEL 12 TER 1379 LYS A 736 ENDMDL MODEL 13 TER 1379 LYS A 736 ENDMDL MODEL 14 TER 1379 LYS A 736 ENDMDL MODEL 15 TER 1379 LYS A 736 ENDMDL MODEL 16 TER 1379 LYS A 736 ENDMDL MODEL 17 TER 1379 LYS A 736 ENDMDL MODEL 18 TER 1379 LYS A 736 ENDMDL MODEL 19 TER 1379 LYS A 736 ENDMDL MODEL 20 TER 1379 LYS A 736 ENDMDL MASTER 153 0 0 0 9 0 0 6 690 1 0 7 END