HEADER TRANSCRIPTION 21-SEP-21 7PRD TITLE SOLUTION STRUCTURE OF THE CHIMERIC NRD1-NAB3 HETERODIMERIZATION TITLE 2 DOMAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN NRD1,HLJ1_G0022400.MRNA.1.CDS.1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: SCNYR20_0008007600, SCP684_0008007200, PACBIOSEQ_LOCUS5883; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TRANSCRIPTION TERMINATION, NNS PATHWAY, NAB3, NRD1, KEYWDS 2 HETERODIMERIZATION, CHIMERA, YEAST, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.CHAVES-ARQUERO,S.MARTINEZ-LUMBRERAS,J.M.PEREZ-CANADILLAS REVDAT 3 14-JUN-23 7PRD 1 REMARK REVDAT 2 26-JAN-22 7PRD 1 JRNL REVDAT 1 12-JAN-22 7PRD 0 JRNL AUTH B.CHAVES-ARQUERO,S.MARTINEZ-LUMBRERAS,S.CAMERO, JRNL AUTH 2 C.M.SANTIVERI,Y.MIRASSOU,R.CAMPOS-OLIVAS,M.A.JIMENEZ, JRNL AUTH 3 O.CALVO,J.M.PEREZ-CANADILLAS JRNL TITL STRUCTURAL BASIS OF NRD1-NAB3 HETERODIMERIZATION. JRNL REF LIFE SCI ALLIANCE V. 5 2022 JRNL REFN ESSN 2575-1077 JRNL PMID 35022249 JRNL DOI 10.26508/LSA.202101252 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7PRD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1292118143. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.1 REMARK 210 IONIC STRENGTH : 35 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL; NULL; NULL; NULL; NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCA; 3D HNCO; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HCCH-TOCSY; 2D 1H- REMARK 210 1H NOESY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY; 3D 1H-13C HSQC NOESY REMARK 210 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRPIPE, CCPNMR REMARK 210 ANALYSIS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 199 -177.96 -58.07 REMARK 500 1 ASN A 228 98.23 -57.32 REMARK 500 1 THR A 272 30.16 -95.86 REMARK 500 1 PRO A 278 -168.92 -69.72 REMARK 500 2 THR A 161 62.80 -114.25 REMARK 500 2 SER A 199 -172.87 -63.28 REMARK 500 2 THR A 222 158.98 173.86 REMARK 500 2 GLU A 225 105.22 77.90 REMARK 500 2 THR A 272 30.43 -95.73 REMARK 500 3 ASN A 190 62.26 67.78 REMARK 500 3 SER A 199 -174.12 -63.58 REMARK 500 3 THR A 222 145.82 177.83 REMARK 500 3 ASN A 228 98.01 -56.12 REMARK 500 3 PRO A 278 -170.29 -69.71 REMARK 500 4 PRO A 186 91.86 -69.75 REMARK 500 4 SER A 199 -169.05 -65.43 REMARK 500 4 LYS A 221 -62.68 -100.66 REMARK 500 4 THR A 222 160.39 174.84 REMARK 500 4 GLU A 225 126.28 70.35 REMARK 500 4 ASN A 226 34.98 -158.85 REMARK 500 4 ALA A 273 -74.42 -51.12 REMARK 500 4 LEU A 274 -43.88 -139.09 REMARK 500 4 SER A 275 165.09 -48.96 REMARK 500 4 SER A 281 -177.74 -62.88 REMARK 500 5 SER A 199 -177.40 -59.82 REMARK 500 5 LYS A 221 39.15 -98.92 REMARK 500 5 GLU A 225 66.14 37.17 REMARK 500 5 ASN A 228 91.57 -66.03 REMARK 500 5 SER A 268 -74.63 -49.21 REMARK 500 5 PRO A 278 96.48 -69.76 REMARK 500 6 ASN A 160 -176.96 -62.53 REMARK 500 6 THR A 161 43.42 37.42 REMARK 500 6 ASN A 188 39.50 -99.02 REMARK 500 6 SER A 199 -172.99 -59.38 REMARK 500 6 LYS A 221 48.70 -101.70 REMARK 500 6 ALA A 273 -74.20 -60.01 REMARK 500 6 LEU A 274 -50.70 -138.14 REMARK 500 7 THR A 200 35.23 70.88 REMARK 500 7 GLU A 225 64.86 67.19 REMARK 500 7 ASN A 228 89.54 -66.47 REMARK 500 7 LEU A 274 -52.88 -129.90 REMARK 500 7 SER A 275 -76.24 -136.07 REMARK 500 8 PRO A 186 -170.76 -69.78 REMARK 500 8 SER A 199 -178.11 -58.43 REMARK 500 8 THR A 222 144.51 171.94 REMARK 500 8 ASN A 228 103.08 -51.09 REMARK 500 9 LYS A 183 56.57 -91.13 REMARK 500 9 SER A 199 -175.40 -65.00 REMARK 500 9 THR A 222 135.62 179.92 REMARK 500 9 ASN A 228 102.15 -50.63 REMARK 500 REMARK 500 THIS ENTRY HAS 137 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34668 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE CHIMERIC NRD1-NAB3 HETERODIMERIZATION REMARK 900 DOMAINS DBREF1 7PRD A 158 222 UNP A0A6V8SAW3_YEASX DBREF2 7PRD A A0A6V8SAW3 158 222 DBREF1 7PRD A 223 282 UNP A0A6L0ZXA8_YEASX DBREF2 7PRD A A0A6L0ZXA8 202 261 SEQRES 1 A 125 THR ALA ASN THR ALA SER GLN GLN LEU SER LEU ASP PRO SEQRES 2 A 125 LYS GLN ARG SER LYS GLN ILE LEU SER ASN LEU LYS LYS SEQRES 3 A 125 SER PRO PRO LEU ASN LEU ASN ILE SER LEU PRO THR ASP SEQRES 4 A 125 LEU THR SER THR ASP PRO ALA LYS GLN GLN ALA ALA LEU SEQRES 5 A 125 PHE GLN VAL ILE ALA ALA LEU GLN LYS HIS PHE LYS THR SEQRES 6 A 125 ASN MET GLU ASN VAL ASN TYR ASP LEU LEU GLN LYS GLN SEQRES 7 A 125 VAL LYS TYR ILE MET ASP SER ASN MET LEU ASN LEU PRO SEQRES 8 A 125 GLN PHE GLN HIS LEU PRO GLN GLU GLU LYS MET SER ALA SEQRES 9 A 125 ILE LEU ALA MET LEU ASN SER ASN SER ASP THR ALA LEU SEQRES 10 A 125 SER VAL PRO PRO HIS ASP SER THR HELIX 1 AA1 ASP A 169 ASN A 180 1 12 HELIX 2 AA2 PRO A 194 SER A 199 5 6 HELIX 3 AA3 ASP A 201 THR A 222 1 22 HELIX 4 AA4 ASN A 228 ASN A 243 1 16 HELIX 5 AA5 LEU A 247 LEU A 253 1 7 HELIX 6 AA6 PRO A 254 ASN A 267 1 14 HELIX 7 AA7 THR A 272 VAL A 276 5 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1