HEADER OXIDOREDUCTASE 24-SEP-21 7PSW TITLE SPIN LABELED IPNS S55C VARIANT IN COMPLEX WITH FE AND ACV UNDER TITLE 2 ANAEROBIC CONDITIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPENICILLIN N SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IPNS; COMPND 5 EC: 1.21.3.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EMERICELLA NIDULANS (STRAIN FGSC A4 / ATCC SOURCE 3 38163 / CBS 112.46 / NRRL 194 / M139); SOURCE 4 ORGANISM_TAXID: 227321; SOURCE 5 STRAIN: FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139; SOURCE 6 GENE: IPNA, IPS, AN2622; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCOLD_IPNS KEYWDS ISOPENICILLIN N SYNTHASE, OXIDASE, PENICILLIN BIOSYNTHESIS, SPIN KEYWDS 2 LABELED PROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.RABE,I.CLIFTON,C.WALLA,C.J.SCHOFIELD REVDAT 4 31-JAN-24 7PSW 1 REMARK REVDAT 3 31-AUG-22 7PSW 1 JRNL REVDAT 2 27-JUL-22 7PSW 1 JRNL REVDAT 1 20-JUL-22 7PSW 0 JRNL AUTH P.RABE,C.C.WALLA,N.K.GOODYEAR,J.WELSH,R.SOUTHWART,I.CLIFTON, JRNL AUTH 2 J.D.S.LINYARD,A.TUMBER,T.D.W.CLARIDGE,W.K.MYERS, JRNL AUTH 3 C.J.SCHOFIELD JRNL TITL SPECTROSCOPIC STUDIES REVEAL DETAILS OF SUBSTRATE-INDUCED JRNL TITL 2 CONFORMATIONAL CHANGES DISTANT FROM THE ACTIVE SITE IN JRNL TITL 3 ISOPENICILLIN N SYNTHASE. JRNL REF J.BIOL.CHEM. V. 298 02249 2022 JRNL REFN ESSN 1083-351X JRNL PMID 35835215 JRNL DOI 10.1016/J.JBC.2022.102249 REMARK 2 REMARK 2 RESOLUTION. 1.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 103422 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.163 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 5140 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.2600 - 3.7600 0.98 3471 188 0.1414 0.1506 REMARK 3 2 3.7600 - 2.9800 1.00 3407 165 0.1261 0.1660 REMARK 3 3 2.9800 - 2.6100 1.00 3353 174 0.1315 0.1559 REMARK 3 4 2.6100 - 2.3700 1.00 3290 203 0.1243 0.1400 REMARK 3 5 2.3700 - 2.2000 1.00 3306 200 0.1251 0.1474 REMARK 3 6 2.2000 - 2.0700 1.00 3321 153 0.1276 0.1339 REMARK 3 7 2.0700 - 1.9700 1.00 3287 178 0.1280 0.1475 REMARK 3 8 1.9600 - 1.8800 1.00 3296 179 0.1355 0.1562 REMARK 3 9 1.8800 - 1.8100 1.00 3276 177 0.1431 0.1524 REMARK 3 10 1.8100 - 1.7400 1.00 3285 151 0.1398 0.1479 REMARK 3 11 1.7400 - 1.6900 1.00 3333 158 0.1461 0.1654 REMARK 3 12 1.6900 - 1.6400 1.00 3256 174 0.1390 0.1723 REMARK 3 13 1.6400 - 1.6000 1.00 3252 177 0.1434 0.1748 REMARK 3 14 1.6000 - 1.5600 1.00 3272 175 0.1475 0.1632 REMARK 3 15 1.5600 - 1.5200 1.00 3259 162 0.1588 0.1727 REMARK 3 16 1.5200 - 1.4900 1.00 3287 151 0.1594 0.1862 REMARK 3 17 1.4900 - 1.4600 1.00 3255 165 0.1662 0.1958 REMARK 3 18 1.4600 - 1.4300 1.00 3261 202 0.1711 0.1983 REMARK 3 19 1.4300 - 1.4100 1.00 3256 154 0.1717 0.1918 REMARK 3 20 1.4100 - 1.3800 1.00 3268 171 0.1662 0.1795 REMARK 3 21 1.3800 - 1.3600 1.00 3243 177 0.1707 0.1766 REMARK 3 22 1.3600 - 1.3400 1.00 3242 180 0.1724 0.2120 REMARK 3 23 1.3400 - 1.3200 1.00 3225 192 0.1836 0.2077 REMARK 3 24 1.3200 - 1.3000 1.00 3263 157 0.1807 0.2056 REMARK 3 25 1.3000 - 1.2900 1.00 3273 153 0.1899 0.1856 REMARK 3 26 1.2900 - 1.2700 1.00 3259 164 0.1916 0.2167 REMARK 3 27 1.2700 - 1.2500 1.00 3242 161 0.1959 0.2309 REMARK 3 28 1.2500 - 1.2400 1.00 3217 176 0.2098 0.2213 REMARK 3 29 1.2400 - 1.2200 0.99 3227 145 0.2203 0.2221 REMARK 3 30 1.2200 - 1.2100 0.95 3100 178 0.2426 0.2378 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5552 30.1244 -10.0875 REMARK 3 T TENSOR REMARK 3 T11: 0.0924 T22: 0.1164 REMARK 3 T33: 0.0947 T12: -0.0095 REMARK 3 T13: -0.0120 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.7300 L22: 0.8726 REMARK 3 L33: 2.4212 L12: 0.0689 REMARK 3 L13: -0.0855 L23: -0.7883 REMARK 3 S TENSOR REMARK 3 S11: -0.0476 S12: 0.0314 S13: -0.0209 REMARK 3 S21: -0.0420 S22: 0.0464 S23: 0.0190 REMARK 3 S31: 0.0434 S32: -0.1992 S33: 0.0195 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3843 30.7507 15.5550 REMARK 3 T TENSOR REMARK 3 T11: 0.0838 T22: 0.0787 REMARK 3 T33: 0.0697 T12: 0.0012 REMARK 3 T13: -0.0180 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.6724 L22: 0.7581 REMARK 3 L33: 2.9717 L12: -0.4802 REMARK 3 L13: -1.3724 L23: 0.7060 REMARK 3 S TENSOR REMARK 3 S11: -0.0424 S12: -0.1896 S13: 0.0012 REMARK 3 S21: 0.0733 S22: 0.0215 S23: -0.0175 REMARK 3 S31: 0.0358 S32: 0.0922 S33: 0.0145 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4102 25.5492 11.0402 REMARK 3 T TENSOR REMARK 3 T11: 0.0953 T22: 0.1145 REMARK 3 T33: 0.0681 T12: 0.0217 REMARK 3 T13: -0.0240 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 5.4581 L22: 4.5725 REMARK 3 L33: 1.6992 L12: 3.8048 REMARK 3 L13: -2.0067 L23: -1.4640 REMARK 3 S TENSOR REMARK 3 S11: 0.0653 S12: -0.3193 S13: -0.0784 REMARK 3 S21: 0.1652 S22: -0.1189 S23: -0.0878 REMARK 3 S31: 0.0582 S32: 0.1948 S33: 0.0667 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7608 29.2806 -8.6252 REMARK 3 T TENSOR REMARK 3 T11: 0.0829 T22: 0.0781 REMARK 3 T33: 0.0811 T12: 0.0068 REMARK 3 T13: 0.0104 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.6831 L22: 1.3382 REMARK 3 L33: 4.8273 L12: -0.5678 REMARK 3 L13: 0.9409 L23: -2.0290 REMARK 3 S TENSOR REMARK 3 S11: -0.0385 S12: 0.0828 S13: 0.0112 REMARK 3 S21: -0.1224 S22: -0.0356 S23: -0.0684 REMARK 3 S31: 0.1477 S32: 0.1491 S33: 0.0815 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 184 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4815 39.4864 1.0638 REMARK 3 T TENSOR REMARK 3 T11: 0.0957 T22: 0.1028 REMARK 3 T33: 0.0944 T12: 0.0122 REMARK 3 T13: -0.0123 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.9158 L22: 0.6932 REMARK 3 L33: 1.3915 L12: 0.0165 REMARK 3 L13: -0.7857 L23: -0.1517 REMARK 3 S TENSOR REMARK 3 S11: 0.0504 S12: 0.0426 S13: 0.0603 REMARK 3 S21: 0.0006 S22: -0.0086 S23: 0.0590 REMARK 3 S31: -0.1370 S32: -0.1140 S33: -0.0465 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8121 47.1170 -13.6384 REMARK 3 T TENSOR REMARK 3 T11: 0.1978 T22: 0.1430 REMARK 3 T33: 0.1486 T12: -0.0051 REMARK 3 T13: 0.0487 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 1.0206 L22: 4.4593 REMARK 3 L33: 6.1155 L12: -0.8813 REMARK 3 L13: 1.3605 L23: -3.6616 REMARK 3 S TENSOR REMARK 3 S11: 0.0715 S12: 0.2508 S13: 0.2233 REMARK 3 S21: -0.1981 S22: -0.1914 S23: -0.2119 REMARK 3 S31: -0.4546 S32: 0.2963 S33: 0.1323 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 313 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5547 45.0303 5.7750 REMARK 3 T TENSOR REMARK 3 T11: 0.1785 T22: 0.1382 REMARK 3 T33: 0.1645 T12: -0.0170 REMARK 3 T13: -0.0228 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 4.7701 L22: 2.0828 REMARK 3 L33: 6.3615 L12: -2.5207 REMARK 3 L13: -5.3943 L23: 2.6047 REMARK 3 S TENSOR REMARK 3 S11: 0.1887 S12: -0.3672 S13: 0.4100 REMARK 3 S21: 0.1586 S22: 0.1120 S23: -0.1715 REMARK 3 S31: -0.2935 S32: 0.1468 S33: -0.2758 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7PSW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1292118235. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JAN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 103529 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.210 REMARK 200 RESOLUTION RANGE LOW (A) : 58.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.44300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6ZAE REMARK 200 REMARK 200 REMARK: PLATE MORPHOLOGY, 50 X 200 UM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M LI2SO4, 0.1 M TRIS PH 8.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.33000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.53650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.72200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.53650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.33000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.72200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CD CE NZ REMARK 470 LYS A 59 CE NZ REMARK 470 LYS A 80 CD CE NZ REMARK 470 LYS A 120 NZ REMARK 470 LYS A 134 CE NZ REMARK 470 ARG A 173 CZ NH1 NH2 REMARK 470 LYS A 176 CE NZ REMARK 470 GLU A 197 OE2 REMARK 470 LYS A 201 CE NZ REMARK 470 LYS A 208 NZ REMARK 470 ASN A 227 ND2 REMARK 470 ALA A 237 CB REMARK 470 LYS A 266 CE NZ REMARK 470 LYS A 305 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 505 O HOH A 740 1.97 REMARK 500 O HOH A 736 O HOH A 917 1.99 REMARK 500 O HOH A 514 O HOH A 694 2.13 REMARK 500 O HOH A 505 O HOH A 607 2.14 REMARK 500 O HOH A 505 O HOH A 786 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 661 O HOH A 824 1655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 -111.86 -95.62 REMARK 500 ASP A 38 -111.86 -99.54 REMARK 500 HIS A 82 63.05 -105.66 REMARK 500 LYS A 97 -40.95 -134.86 REMARK 500 THR A 123 -5.83 76.87 REMARK 500 ASN A 230 -29.73 -154.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 214 NE2 REMARK 620 2 ASP A 216 OD1 98.5 REMARK 620 3 HIS A 270 NE2 85.8 89.1 REMARK 620 4 ACV A 402 S17 94.3 90.2 179.3 REMARK 620 5 HOH A 746 O 153.1 107.6 88.5 91.7 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7POY RELATED DB: PDB REMARK 900 RELATED ID: 6ZAM RELATED DB: PDB DBREF 7PSW A 1 331 UNP P05326 IPNS_EMENI 1 331 SEQADV 7PSW CYS A 55 UNP P05326 SER 55 ENGINEERED MUTATION SEQRES 1 A 331 MET GLY SER VAL SER LYS ALA ASN VAL PRO LYS ILE ASP SEQRES 2 A 331 VAL SER PRO LEU PHE GLY ASP ASP GLN ALA ALA LYS MET SEQRES 3 A 331 ARG VAL ALA GLN GLN ILE ASP ALA ALA SER ARG ASP THR SEQRES 4 A 331 GLY PHE PHE TYR ALA VAL ASN HIS GLY ILE ASN VAL GLN SEQRES 5 A 331 ARG LEU CYS GLN LYS THR LYS GLU PHE HIS MET SER ILE SEQRES 6 A 331 THR PRO GLU GLU LYS TRP ASP LEU ALA ILE ARG ALA TYR SEQRES 7 A 331 ASN LYS GLU HIS GLN ASP GLN VAL ARG ALA GLY TYR TYR SEQRES 8 A 331 LEU SER ILE PRO GLY LYS LYS ALA VAL GLU SER PHE CYS SEQRES 9 A 331 TYR LEU ASN PRO ASN PHE THR PRO ASP HIS PRO ARG ILE SEQRES 10 A 331 GLN ALA LYS THR PRO THR HIS GLU VAL ASN VAL TRP PRO SEQRES 11 A 331 ASP GLU THR LYS HIS PRO GLY PHE GLN ASP PHE ALA GLU SEQRES 12 A 331 GLN TYR TYR TRP ASP VAL PHE GLY LEU SER SER ALA LEU SEQRES 13 A 331 LEU LYS GLY TYR ALA LEU ALA LEU GLY LYS GLU GLU ASN SEQRES 14 A 331 PHE PHE ALA ARG HIS PHE LYS PRO ASP ASP THR LEU ALA SEQRES 15 A 331 SER VAL VAL LEU ILE ARG TYR PRO TYR LEU ASP PRO TYR SEQRES 16 A 331 PRO GLU ALA ALA ILE LYS THR ALA ALA ASP GLY THR LYS SEQRES 17 A 331 LEU SER PHE GLU TRP HIS GLU ASP VAL SER LEU ILE THR SEQRES 18 A 331 VAL LEU TYR GLN SER ASN VAL GLN ASN LEU GLN VAL GLU SEQRES 19 A 331 THR ALA ALA GLY TYR GLN ASP ILE GLU ALA ASP ASP THR SEQRES 20 A 331 GLY TYR LEU ILE ASN CYS GLY SER TYR MET ALA HIS LEU SEQRES 21 A 331 THR ASN ASN TYR TYR LYS ALA PRO ILE HIS ARG VAL LYS SEQRES 22 A 331 TRP VAL ASN ALA GLU ARG GLN SER LEU PRO PHE PHE VAL SEQRES 23 A 331 ASN LEU GLY TYR ASP SER VAL ILE ASP PRO PHE ASP PRO SEQRES 24 A 331 ARG GLU PRO ASN GLY LYS SER ASP ARG GLU PRO LEU SER SEQRES 25 A 331 TYR GLY ASP TYR LEU GLN ASN GLY LEU VAL SER LEU ILE SEQRES 26 A 331 ASN LYS ASN GLY GLN THR HET FE A 401 1 HET ACV A 402 46 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET GOL A 406 14 HETNAM FE FE (III) ION HETNAM ACV L-D-(A-AMINOADIPOYL)-L-CYSTEINYL-D-VALINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FE FE 3+ FORMUL 3 ACV C14 H25 N3 O6 S FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *464(H2 O) HELIX 1 AA1 SER A 15 GLY A 19 5 5 HELIX 2 AA2 ASP A 21 ASP A 38 1 18 HELIX 3 AA3 ASN A 50 MET A 63 1 14 HELIX 4 AA4 THR A 66 ALA A 74 1 9 HELIX 5 AA5 HIS A 114 ALA A 119 1 6 HELIX 6 AA6 GLY A 137 LEU A 164 1 28 HELIX 7 AA7 PHE A 171 PHE A 175 5 5 HELIX 8 AA8 PRO A 196 ILE A 200 5 5 HELIX 9 AA9 GLY A 254 THR A 261 1 8 HELIX 10 AB1 SER A 312 GLY A 329 1 18 SHEET 1 AA1 8 LYS A 11 ASP A 13 0 SHEET 2 AA1 8 PHE A 41 VAL A 45 1 O TYR A 43 N ILE A 12 SHEET 3 AA1 8 TYR A 249 CYS A 253 -1 O TYR A 249 N ALA A 44 SHEET 4 AA1 8 ILE A 220 GLN A 225 -1 N LEU A 223 O LEU A 250 SHEET 5 AA1 8 ARG A 279 VAL A 286 -1 O LEU A 282 N TYR A 224 SHEET 6 AA1 8 SER A 183 TYR A 189 -1 N TYR A 189 O ARG A 279 SHEET 7 AA1 8 GLU A 101 TYR A 105 -1 N PHE A 103 O LEU A 186 SHEET 8 AA1 8 GLY A 89 TYR A 91 -1 N TYR A 91 O SER A 102 SHEET 1 AA2 5 LYS A 201 THR A 202 0 SHEET 2 AA2 5 LYS A 208 HIS A 214 -1 O LEU A 209 N LYS A 201 SHEET 3 AA2 5 HIS A 270 LYS A 273 -1 O VAL A 272 N SER A 210 SHEET 4 AA2 5 LEU A 231 THR A 235 -1 N GLN A 232 O ARG A 271 SHEET 5 AA2 5 GLY A 238 ASP A 241 -1 O GLY A 238 N THR A 235 LINK NE2 HIS A 214 FE FE A 401 1555 1555 2.14 LINK OD1 ASP A 216 FE FE A 401 1555 1555 2.02 LINK NE2 HIS A 270 FE FE A 401 1555 1555 2.16 LINK FE FE A 401 S17 ACV A 402 1555 1555 2.40 LINK FE FE A 401 O HOH A 746 1555 1555 1.99 CISPEP 1 ASP A 193 PRO A 194 0 3.44 CRYST1 46.660 71.444 101.073 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021432 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013997 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009894 0.00000