HEADER SUGAR BINDING PROTEIN 28-SEP-21 7PU4 TITLE CRYSTAL STRUCTURE OF THE DIMER RBP-N AND RBP-TRUNC FROM THERMOTOGA TITLE 2 MARITIMA RIBOSE BINDING PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSE ABC TRANSPORTER, PERIPLASMIC RIBOSE-BINDING PROTEIN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: CHAIN A (RBP-N) & B (RBP-TRUNC) FORM A DIMER COMPND 6 RECONSTRUCTING THE CANONICAL RIBOSE BINDING PROTEIN; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RIBOSE ABC TRANSPORTER, PERIPLASMIC RIBOSE-BINDING PROTEIN; COMPND 9 CHAIN: B, D; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: CHAIN A (RBP-N) & B (RBP-TRUNC) FORM A DIMER COMPND 12 RECONSTRUCTING THE CANONICAL RIBOSE BINDING PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA MSB8; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8; SOURCE 5 GENE: TM_0958; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21B(+); SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA MSB8; SOURCE 12 ORGANISM_TAXID: 243274; SOURCE 13 STRAIN: ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8; SOURCE 14 GENE: TM_0958; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET21B(+) KEYWDS PERIPLASMIC BINDING PROTEIN, SUBSTRATE BINDING PROTEIN, RIBOSE, KEYWDS 2 LIGAND BINDING, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.ROMERO-ROMERO,F.MICHEL,B.HOCKER REVDAT 3 07-FEB-24 7PU4 1 REMARK REVDAT 2 25-OCT-23 7PU4 1 JRNL REVDAT 1 08-MAR-23 7PU4 0 JRNL AUTH F.MICHEL,S.ROMERO-ROMERO,B.HOCKER JRNL TITL RETRACING THE EVOLUTION OF A MODERN PERIPLASMIC BINDING JRNL TITL 2 PROTEIN. JRNL REF PROTEIN SCI. E4793 2023 JRNL REFN ESSN 1469-896X JRNL PMID 37788980 JRNL DOI 10.1002/PRO.4793 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 64573 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.250 REMARK 3 FREE R VALUE TEST SET COUNT : 2097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.0100 - 4.1600 1.00 4425 148 0.1635 0.1694 REMARK 3 2 4.1600 - 3.3000 1.00 4252 143 0.1619 0.1919 REMARK 3 3 3.3000 - 2.8900 1.00 4230 142 0.1977 0.2578 REMARK 3 4 2.8900 - 2.6200 1.00 4194 141 0.2136 0.2576 REMARK 3 5 2.6200 - 2.4400 1.00 4182 140 0.2137 0.3014 REMARK 3 6 2.4400 - 2.2900 1.00 4179 140 0.2114 0.2521 REMARK 3 7 2.2900 - 2.1800 1.00 4133 139 0.2247 0.2616 REMARK 3 8 2.1800 - 2.0800 1.00 4166 140 0.2349 0.3174 REMARK 3 9 2.0800 - 2.0000 1.00 4156 139 0.2434 0.2897 REMARK 3 10 2.0000 - 1.9300 1.00 4137 139 0.2829 0.2678 REMARK 3 11 1.9300 - 1.8700 1.00 4121 138 0.3034 0.2672 REMARK 3 12 1.8700 - 1.8200 1.00 4141 139 0.3331 0.3792 REMARK 3 13 1.8200 - 1.7700 1.00 4112 138 0.3669 0.4061 REMARK 3 14 1.7700 - 1.7300 1.00 4102 138 0.4094 0.4433 REMARK 3 15 1.7300 - 1.6900 0.95 3946 133 0.4934 0.5584 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.314 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.757 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4465 REMARK 3 ANGLE : 0.892 6073 REMARK 3 CHIRALITY : 0.057 679 REMARK 3 PLANARITY : 0.007 796 REMARK 3 DIHEDRAL : 5.870 619 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 2 THROUGH 126) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2824 8.5007 -29.4872 REMARK 3 T TENSOR REMARK 3 T11: 0.5162 T22: 0.2386 REMARK 3 T33: 0.3131 T12: -0.0208 REMARK 3 T13: -0.0512 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 1.4002 L22: 1.7066 REMARK 3 L33: 2.8508 L12: 0.2851 REMARK 3 L13: 0.2399 L23: 0.3162 REMARK 3 S TENSOR REMARK 3 S11: -0.0747 S12: 0.0228 S13: 0.1738 REMARK 3 S21: 0.0553 S22: -0.0741 S23: -0.2137 REMARK 3 S31: -0.6530 S32: 0.0618 S33: -0.0453 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 16 THROUGH 176) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7323 1.1020 -19.1622 REMARK 3 T TENSOR REMARK 3 T11: 0.5670 T22: 0.3588 REMARK 3 T33: 0.5140 T12: 0.0245 REMARK 3 T13: -0.0701 T23: -0.0670 REMARK 3 L TENSOR REMARK 3 L11: 2.8702 L22: 1.4208 REMARK 3 L33: 1.4950 L12: 0.7667 REMARK 3 L13: 0.1010 L23: 0.3231 REMARK 3 S TENSOR REMARK 3 S11: 0.1673 S12: -0.0100 S13: -0.5000 REMARK 3 S21: 0.0396 S22: -0.0138 S23: -0.6046 REMARK 3 S31: 0.0672 S32: 0.3873 S33: -0.1084 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 1 THROUGH 123) REMARK 3 ORIGIN FOR THE GROUP (A): -25.8064 -8.8121 -11.5082 REMARK 3 T TENSOR REMARK 3 T11: 0.4741 T22: 0.3567 REMARK 3 T33: 0.2787 T12: -0.0850 REMARK 3 T13: 0.0136 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 1.1254 L22: 1.2456 REMARK 3 L33: 2.6857 L12: 0.1761 REMARK 3 L13: 0.0786 L23: 0.7527 REMARK 3 S TENSOR REMARK 3 S11: 0.0570 S12: -0.0906 S13: -0.2361 REMARK 3 S21: 0.1628 S22: -0.1519 S23: 0.0612 REMARK 3 S31: 0.5651 S32: -0.4453 S33: 0.1657 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 11 THROUGH 175) REMARK 3 ORIGIN FOR THE GROUP (A): -23.9281 10.6112 -0.3608 REMARK 3 T TENSOR REMARK 3 T11: 0.2759 T22: 0.2314 REMARK 3 T33: 0.2147 T12: 0.0248 REMARK 3 T13: -0.0441 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.7766 L22: 1.3908 REMARK 3 L33: 3.0164 L12: -0.1080 REMARK 3 L13: -0.8207 L23: 1.1930 REMARK 3 S TENSOR REMARK 3 S11: 0.0485 S12: -0.0459 S13: -0.0117 REMARK 3 S21: -0.0495 S22: -0.1032 S23: 0.1322 REMARK 3 S31: -0.1882 S32: -0.1063 S33: 0.0272 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7PU4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1292118375. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-AUG-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : DCM SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64629 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 39.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.12180 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : 1.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.960 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2FN9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH: 7.5, PEG 20000 15% REMARK 280 W/V, RBP-N AND RBP-TRUNC EQUIMOLARLY MIXED AT 0.5 MM, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.60500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.90000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.10000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.90000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.60500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.10000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 127 REMARK 465 GLU A 128 REMARK 465 HIS A 129 REMARK 465 HIS A 130 REMARK 465 HIS A 131 REMARK 465 HIS A 132 REMARK 465 HIS A 133 REMARK 465 HIS A 134 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 GLU B 3 REMARK 465 TYR B 4 REMARK 465 PHE B 5 REMARK 465 VAL B 6 REMARK 465 LYS B 7 REMARK 465 PHE B 8 REMARK 465 LEU B 9 REMARK 465 LYS B 10 REMARK 465 GLU B 11 REMARK 465 LYS B 12 REMARK 465 TYR B 13 REMARK 465 PRO B 14 REMARK 465 ASP B 15 REMARK 465 TYR B 177 REMARK 465 GLY B 178 REMARK 465 ARG B 179 REMARK 465 LYS B 180 REMARK 465 LEU B 181 REMARK 465 GLU B 182 REMARK 465 HIS B 183 REMARK 465 HIS B 184 REMARK 465 HIS B 185 REMARK 465 HIS B 186 REMARK 465 HIS B 187 REMARK 465 HIS B 188 REMARK 465 GLU C 124 REMARK 465 LYS C 125 REMARK 465 LYS C 126 REMARK 465 LEU C 127 REMARK 465 GLU C 128 REMARK 465 HIS C 129 REMARK 465 HIS C 130 REMARK 465 HIS C 131 REMARK 465 HIS C 132 REMARK 465 HIS C 133 REMARK 465 HIS C 134 REMARK 465 MET D 1 REMARK 465 GLY D 2 REMARK 465 GLU D 3 REMARK 465 TYR D 4 REMARK 465 PHE D 5 REMARK 465 VAL D 6 REMARK 465 LYS D 7 REMARK 465 PHE D 8 REMARK 465 LEU D 9 REMARK 465 LYS D 10 REMARK 465 ALA D 176 REMARK 465 TYR D 177 REMARK 465 GLY D 178 REMARK 465 ARG D 179 REMARK 465 LYS D 180 REMARK 465 LEU D 181 REMARK 465 GLU D 182 REMARK 465 HIS D 183 REMARK 465 HIS D 184 REMARK 465 HIS D 185 REMARK 465 HIS D 186 REMARK 465 HIS D 187 REMARK 465 HIS D 188 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 LYS A 77 CG CD CE NZ REMARK 470 LYS A 80 NZ REMARK 470 LYS A 123 CE NZ REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 LYS A 126 CD CE NZ REMARK 470 LYS B 17 CG CD CE NZ REMARK 470 GLU B 18 CG CD OE1 OE2 REMARK 470 LYS B 51 CG CD CE NZ REMARK 470 VAL B 53 CG1 CG2 REMARK 470 ARG B 62 NH1 NH2 REMARK 470 LYS B 67 CG CD CE NZ REMARK 470 GLN B 71 CG CD OE1 NE2 REMARK 470 GLN B 74 CG CD OE1 NE2 REMARK 470 LYS B 80 CE NZ REMARK 470 LYS B 95 CG CD CE NZ REMARK 470 GLU B 114 CG CD OE1 OE2 REMARK 470 LYS B 121 CG CD CE NZ REMARK 470 LYS B 124 CE NZ REMARK 470 GLU B 169 CG CD OE1 OE2 REMARK 470 ASP B 172 CG OD1 OD2 REMARK 470 LYS B 173 CE NZ REMARK 470 LYS C 2 CG CD CE NZ REMARK 470 GLU C 34 CG CD OE1 OE2 REMARK 470 LYS C 46 CG CD CE NZ REMARK 470 LYS C 77 CE NZ REMARK 470 GLU C 81 CG CD OE1 OE2 REMARK 470 GLU D 11 CG CD OE1 OE2 REMARK 470 LYS D 17 CE NZ REMARK 470 LYS D 67 CD CE NZ REMARK 470 GLN D 71 CD OE1 NE2 REMARK 470 LYS D 95 CG CD CE NZ REMARK 470 GLU D 114 CG CD OE1 OE2 REMARK 470 GLU D 169 CG CD OE1 OE2 REMARK 470 LYS D 173 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 90 -56.82 74.37 REMARK 500 ASN A 94 43.51 -82.18 REMARK 500 LEU A 98 -67.62 -101.87 REMARK 500 ASP B 111 -42.61 149.98 REMARK 500 ASN C 13 53.35 -96.03 REMARK 500 ASN C 14 118.49 -175.57 REMARK 500 ASP C 90 -54.83 73.20 REMARK 500 ASN C 94 40.46 -79.33 REMARK 500 LEU C 98 -66.04 -105.49 REMARK 500 ARG D 102 53.99 -100.64 REMARK 500 ASP D 111 -43.89 149.12 REMARK 500 REMARK 500 REMARK: NULL DBREF 7PU4 A 2 125 UNP Q9X053 Q9X053_THEMA 30 153 DBREF 7PU4 B 1 182 UNP Q9X053 Q9X053_THEMA 142 323 DBREF 7PU4 C 2 125 UNP Q9X053 Q9X053_THEMA 30 153 DBREF 7PU4 D 1 182 UNP Q9X053 Q9X053_THEMA 142 323 SEQADV 7PU4 MET A 1 UNP Q9X053 INITIATING METHIONINE SEQADV 7PU4 LYS A 126 UNP Q9X053 EXPRESSION TAG SEQADV 7PU4 LEU A 127 UNP Q9X053 EXPRESSION TAG SEQADV 7PU4 GLU A 128 UNP Q9X053 EXPRESSION TAG SEQADV 7PU4 HIS A 129 UNP Q9X053 EXPRESSION TAG SEQADV 7PU4 HIS A 130 UNP Q9X053 EXPRESSION TAG SEQADV 7PU4 HIS A 131 UNP Q9X053 EXPRESSION TAG SEQADV 7PU4 HIS A 132 UNP Q9X053 EXPRESSION TAG SEQADV 7PU4 HIS A 133 UNP Q9X053 EXPRESSION TAG SEQADV 7PU4 HIS A 134 UNP Q9X053 EXPRESSION TAG SEQADV 7PU4 LEU B 181 UNP Q9X053 GLU 322 CONFLICT SEQADV 7PU4 HIS B 183 UNP Q9X053 EXPRESSION TAG SEQADV 7PU4 HIS B 184 UNP Q9X053 EXPRESSION TAG SEQADV 7PU4 HIS B 185 UNP Q9X053 EXPRESSION TAG SEQADV 7PU4 HIS B 186 UNP Q9X053 EXPRESSION TAG SEQADV 7PU4 HIS B 187 UNP Q9X053 EXPRESSION TAG SEQADV 7PU4 HIS B 188 UNP Q9X053 EXPRESSION TAG SEQADV 7PU4 MET C 1 UNP Q9X053 INITIATING METHIONINE SEQADV 7PU4 LYS C 126 UNP Q9X053 EXPRESSION TAG SEQADV 7PU4 LEU C 127 UNP Q9X053 EXPRESSION TAG SEQADV 7PU4 GLU C 128 UNP Q9X053 EXPRESSION TAG SEQADV 7PU4 HIS C 129 UNP Q9X053 EXPRESSION TAG SEQADV 7PU4 HIS C 130 UNP Q9X053 EXPRESSION TAG SEQADV 7PU4 HIS C 131 UNP Q9X053 EXPRESSION TAG SEQADV 7PU4 HIS C 132 UNP Q9X053 EXPRESSION TAG SEQADV 7PU4 HIS C 133 UNP Q9X053 EXPRESSION TAG SEQADV 7PU4 HIS C 134 UNP Q9X053 EXPRESSION TAG SEQADV 7PU4 LEU D 181 UNP Q9X053 GLU 322 CONFLICT SEQADV 7PU4 HIS D 183 UNP Q9X053 EXPRESSION TAG SEQADV 7PU4 HIS D 184 UNP Q9X053 EXPRESSION TAG SEQADV 7PU4 HIS D 185 UNP Q9X053 EXPRESSION TAG SEQADV 7PU4 HIS D 186 UNP Q9X053 EXPRESSION TAG SEQADV 7PU4 HIS D 187 UNP Q9X053 EXPRESSION TAG SEQADV 7PU4 HIS D 188 UNP Q9X053 EXPRESSION TAG SEQRES 1 A 134 MET LYS GLY LYS MET ALA ILE VAL ILE SER THR LEU ASN SEQRES 2 A 134 ASN PRO TRP PHE VAL VAL LEU ALA GLU THR ALA LYS GLN SEQRES 3 A 134 ARG ALA GLU GLN LEU GLY TYR GLU ALA THR ILE PHE ASP SEQRES 4 A 134 SER GLN ASN ASP THR ALA LYS GLU SER ALA HIS PHE ASP SEQRES 5 A 134 ALA ILE ILE ALA ALA GLY TYR ASP ALA ILE ILE PHE ASN SEQRES 6 A 134 PRO THR ASP ALA ASP GLY SER ILE ALA ASN VAL LYS ARG SEQRES 7 A 134 ALA LYS GLU ALA GLY ILE PRO VAL PHE CYS VAL ASP ARG SEQRES 8 A 134 GLY ILE ASN ALA ARG GLY LEU ALA VAL ALA GLN ILE TYR SEQRES 9 A 134 SER ASP ASN TYR TYR GLY GLY VAL LEU MET GLY GLU TYR SEQRES 10 A 134 PHE VAL LYS PHE LEU LYS GLU LYS LYS LEU GLU HIS HIS SEQRES 11 A 134 HIS HIS HIS HIS SEQRES 1 B 188 MET GLY GLU TYR PHE VAL LYS PHE LEU LYS GLU LYS TYR SEQRES 2 B 188 PRO ASP ALA LYS GLU ILE PRO TYR ALA GLU LEU LEU GLY SEQRES 3 B 188 ILE LEU SER ALA GLN PRO THR TRP ASP ARG SER ASN GLY SEQRES 4 B 188 PHE HIS SER VAL VAL ASP GLN TYR PRO GLU PHE LYS MET SEQRES 5 B 188 VAL ALA GLN GLN SER ALA GLU PHE ASP ARG ASP THR ALA SEQRES 6 B 188 TYR LYS VAL THR GLU GLN ILE LEU GLN ALA HIS PRO GLU SEQRES 7 B 188 ILE LYS ALA ILE TRP CYS GLY ASN ASP ALA MET ALA LEU SEQRES 8 B 188 GLY ALA MET LYS ALA CYS GLU ALA ALA GLY ARG THR ASP SEQRES 9 B 188 ILE TYR ILE PHE GLY PHE ASP GLY ALA GLU ASP VAL ILE SEQRES 10 B 188 ASN ALA ILE LYS GLU GLY LYS GLN ILE VAL ALA THR ILE SEQRES 11 B 188 MET GLN PHE PRO LYS LEU MET ALA ARG LEU ALA VAL GLU SEQRES 12 B 188 TRP ALA ASP GLN TYR LEU ARG GLY GLU ARG SER PHE PRO SEQRES 13 B 188 GLU ILE VAL PRO VAL THR VAL GLU LEU VAL THR ARG GLU SEQRES 14 B 188 ASN ILE ASP LYS TYR THR ALA TYR GLY ARG LYS LEU GLU SEQRES 15 B 188 HIS HIS HIS HIS HIS HIS SEQRES 1 C 134 MET LYS GLY LYS MET ALA ILE VAL ILE SER THR LEU ASN SEQRES 2 C 134 ASN PRO TRP PHE VAL VAL LEU ALA GLU THR ALA LYS GLN SEQRES 3 C 134 ARG ALA GLU GLN LEU GLY TYR GLU ALA THR ILE PHE ASP SEQRES 4 C 134 SER GLN ASN ASP THR ALA LYS GLU SER ALA HIS PHE ASP SEQRES 5 C 134 ALA ILE ILE ALA ALA GLY TYR ASP ALA ILE ILE PHE ASN SEQRES 6 C 134 PRO THR ASP ALA ASP GLY SER ILE ALA ASN VAL LYS ARG SEQRES 7 C 134 ALA LYS GLU ALA GLY ILE PRO VAL PHE CYS VAL ASP ARG SEQRES 8 C 134 GLY ILE ASN ALA ARG GLY LEU ALA VAL ALA GLN ILE TYR SEQRES 9 C 134 SER ASP ASN TYR TYR GLY GLY VAL LEU MET GLY GLU TYR SEQRES 10 C 134 PHE VAL LYS PHE LEU LYS GLU LYS LYS LEU GLU HIS HIS SEQRES 11 C 134 HIS HIS HIS HIS SEQRES 1 D 188 MET GLY GLU TYR PHE VAL LYS PHE LEU LYS GLU LYS TYR SEQRES 2 D 188 PRO ASP ALA LYS GLU ILE PRO TYR ALA GLU LEU LEU GLY SEQRES 3 D 188 ILE LEU SER ALA GLN PRO THR TRP ASP ARG SER ASN GLY SEQRES 4 D 188 PHE HIS SER VAL VAL ASP GLN TYR PRO GLU PHE LYS MET SEQRES 5 D 188 VAL ALA GLN GLN SER ALA GLU PHE ASP ARG ASP THR ALA SEQRES 6 D 188 TYR LYS VAL THR GLU GLN ILE LEU GLN ALA HIS PRO GLU SEQRES 7 D 188 ILE LYS ALA ILE TRP CYS GLY ASN ASP ALA MET ALA LEU SEQRES 8 D 188 GLY ALA MET LYS ALA CYS GLU ALA ALA GLY ARG THR ASP SEQRES 9 D 188 ILE TYR ILE PHE GLY PHE ASP GLY ALA GLU ASP VAL ILE SEQRES 10 D 188 ASN ALA ILE LYS GLU GLY LYS GLN ILE VAL ALA THR ILE SEQRES 11 D 188 MET GLN PHE PRO LYS LEU MET ALA ARG LEU ALA VAL GLU SEQRES 12 D 188 TRP ALA ASP GLN TYR LEU ARG GLY GLU ARG SER PHE PRO SEQRES 13 D 188 GLU ILE VAL PRO VAL THR VAL GLU LEU VAL THR ARG GLU SEQRES 14 D 188 ASN ILE ASP LYS TYR THR ALA TYR GLY ARG LYS LEU GLU SEQRES 15 D 188 HIS HIS HIS HIS HIS HIS FORMUL 5 HOH *382(H2 O) HELIX 1 AA1 ASN A 14 LEU A 31 1 18 HELIX 2 AA2 ASP A 43 ALA A 57 1 15 HELIX 3 AA3 SER A 72 GLY A 83 1 12 HELIX 4 AA4 ASP A 106 LYS A 126 1 21 HELIX 5 AA5 ALA B 30 ASP B 45 1 16 HELIX 6 AA6 ASP B 61 HIS B 76 1 16 HELIX 7 AA7 ASN B 86 GLY B 101 1 16 HELIX 8 AA8 ALA B 113 GLU B 122 1 10 HELIX 9 AA9 PHE B 133 ARG B 150 1 18 HELIX 10 AB1 ASN B 170 THR B 175 5 6 HELIX 11 AB2 ASN C 14 LEU C 31 1 18 HELIX 12 AB3 ASP C 43 GLY C 58 1 16 HELIX 13 AB4 SER C 72 ALA C 82 1 11 HELIX 14 AB5 ASP C 106 LYS C 123 1 18 HELIX 15 AB6 ALA D 30 ASP D 45 1 16 HELIX 16 AB7 ASP D 61 HIS D 76 1 16 HELIX 17 AB8 ASN D 86 ALA D 100 1 15 HELIX 18 AB9 ALA D 113 GLU D 122 1 10 HELIX 19 AC1 PHE D 133 ARG D 150 1 18 HELIX 20 AC2 ASN D 170 TYR D 174 5 5 SHEET 1 AA1 6 GLU A 34 ASP A 39 0 SHEET 2 AA1 6 LYS A 4 ILE A 9 1 N ILE A 7 O THR A 36 SHEET 3 AA1 6 ALA A 61 PHE A 64 1 O ILE A 63 N ALA A 6 SHEET 4 AA1 6 VAL A 86 VAL A 89 1 O PHE A 87 N PHE A 64 SHEET 5 AA1 6 ALA A 101 SER A 105 1 O ILE A 103 N CYS A 88 SHEET 6 AA1 6 ILE B 158 VAL B 161 1 O VAL B 159 N GLN A 102 SHEET 1 AA2 6 PHE B 50 SER B 57 0 SHEET 2 AA2 6 ILE B 19 LEU B 25 1 N TYR B 21 O VAL B 53 SHEET 3 AA2 6 ALA B 81 CYS B 84 1 O TRP B 83 N LEU B 24 SHEET 4 AA2 6 TYR B 106 PHE B 108 1 O PHE B 108 N CYS B 84 SHEET 5 AA2 6 ILE B 126 MET B 131 1 O VAL B 127 N ILE B 107 SHEET 6 AA2 6 GLU B 164 THR B 167 -1 O GLU B 164 N MET B 131 SHEET 1 AA3 6 GLU C 34 ASP C 39 0 SHEET 2 AA3 6 LYS C 4 ILE C 9 1 N ILE C 7 O PHE C 38 SHEET 3 AA3 6 ALA C 61 PHE C 64 1 O ILE C 63 N VAL C 8 SHEET 4 AA3 6 VAL C 86 VAL C 89 1 O PHE C 87 N ILE C 62 SHEET 5 AA3 6 ALA C 101 SER C 105 1 O ILE C 103 N CYS C 88 SHEET 6 AA3 6 ILE D 158 VAL D 161 1 O VAL D 159 N GLN C 102 SHEET 1 AA4 6 PHE D 50 SER D 57 0 SHEET 2 AA4 6 ILE D 19 LEU D 25 1 N LEU D 25 O GLN D 56 SHEET 3 AA4 6 ALA D 81 CYS D 84 1 O TRP D 83 N LEU D 24 SHEET 4 AA4 6 TYR D 106 PHE D 108 1 O PHE D 108 N CYS D 84 SHEET 5 AA4 6 ILE D 126 MET D 131 1 O VAL D 127 N ILE D 107 SHEET 6 AA4 6 GLU D 164 THR D 167 -1 O GLU D 164 N MET D 131 CRYST1 65.210 84.200 103.800 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015335 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011876 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009634 0.00000