HEADER ANTIMICROBIAL PROTEIN 01-OCT-21 7PVB TITLE STRUCTURE OF VISCOTOXIN A3 FROM VISCUM ALBUM IN THE COMPLEX WITH DPC TITLE 2 MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: VISCOTOXIN-A3; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VISCUM ALBUM; SOURCE 3 ORGANISM_COMMON: EUROPEAN MISTLETOE; SOURCE 4 ORGANISM_TAXID: 3972 KEYWDS ANTIMICROBIAL PEPTIDES, VISCOTOXIN, THIONIN, MEMBRANE ACTIVITY, KEYWDS 2 OLIGOMERIZATION, MEMBRANE DISRUPTION, CYTOTOXICITY, ANTIMICROBIAL KEYWDS 3 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.S.PARAMONOV,Z.O.SHENKAREV REVDAT 3 13-NOV-24 7PVB 1 REMARK REVDAT 2 14-JUN-23 7PVB 1 REMARK REVDAT 1 01-DEC-21 7PVB 0 JRNL AUTH A.S.PARAMONOV,E.N.LYUKMANOVA,A.G.TONEVITSKY,A.S.ARSENIEV, JRNL AUTH 2 Z.O.SHENKAREV JRNL TITL SPATIAL STRUCTURE AND OLIGOMERIZATION OF VISCOTOXIN A3 IN JRNL TITL 2 DETERGENT MICELLES: IMPLICATION FOR MECHANISMS OF ION JRNL TITL 3 CHANNEL FORMATION AND MEMBRANE LYSIS. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 585 22 2021 JRNL REFN ESSN 1090-2104 JRNL PMID 34781057 JRNL DOI 10.1016/J.BBRC.2021.11.022 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.98.13 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7PVB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1292118444. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 4.0 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 1.6 MM VTA3, 128 MM [U-100% 2H] REMARK 210 DPC, 95% H2O/5% D2O; 1.6 MM VTA3, REMARK 210 128 MM [U-100% 2H] DPC, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; 2D 1H-13C REMARK 210 HSQC; 2D DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY 3.98.13, CARA, VNMR REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 5 -76.79 -84.73 REMARK 500 1 SER A 38 35.69 -95.60 REMARK 500 1 TYR A 44 75.22 -113.65 REMARK 500 2 PRO A 5 -76.49 -82.70 REMARK 500 2 SER A 38 32.98 -96.07 REMARK 500 2 TYR A 44 70.73 -114.50 REMARK 500 3 PRO A 5 -76.41 -83.07 REMARK 500 3 SER A 36 37.05 -99.81 REMARK 500 3 SER A 38 36.24 -95.53 REMARK 500 3 TYR A 44 72.36 -114.02 REMARK 500 4 PRO A 5 -76.70 -84.24 REMARK 500 4 SER A 36 59.10 -100.21 REMARK 500 4 SER A 38 34.05 -95.86 REMARK 500 4 TYR A 44 70.01 -115.97 REMARK 500 5 PRO A 5 -78.18 -85.05 REMARK 500 5 SER A 38 34.45 -95.92 REMARK 500 5 TYR A 44 71.93 -114.49 REMARK 500 6 PRO A 5 -77.36 -84.57 REMARK 500 6 TYR A 44 71.84 -115.05 REMARK 500 7 PRO A 5 -76.87 -83.11 REMARK 500 7 SER A 38 36.31 -98.54 REMARK 500 7 TYR A 44 71.47 -114.29 REMARK 500 8 PRO A 5 -77.27 -83.10 REMARK 500 8 SER A 38 36.15 -95.19 REMARK 500 8 TYR A 44 72.45 -114.02 REMARK 500 9 PRO A 5 -75.63 -82.74 REMARK 500 9 SER A 38 32.45 -95.87 REMARK 500 9 TYR A 44 71.30 -114.26 REMARK 500 10 PRO A 5 -76.76 -84.07 REMARK 500 10 TYR A 44 72.68 -115.90 REMARK 500 11 PRO A 5 -77.60 -83.20 REMARK 500 11 SER A 36 44.13 -97.93 REMARK 500 11 SER A 38 35.81 -96.83 REMARK 500 11 TYR A 44 72.26 -114.06 REMARK 500 12 PRO A 5 -77.44 -84.50 REMARK 500 12 SER A 36 36.60 -96.37 REMARK 500 12 TYR A 44 71.66 -114.34 REMARK 500 13 PRO A 5 -75.65 -82.68 REMARK 500 13 SER A 38 36.26 -95.44 REMARK 500 13 TYR A 44 72.89 -114.01 REMARK 500 14 PRO A 5 -76.58 -84.02 REMARK 500 14 SER A 36 58.83 -100.13 REMARK 500 14 TYR A 44 73.66 -115.44 REMARK 500 15 PRO A 5 -78.23 -83.50 REMARK 500 15 SER A 36 57.69 -100.13 REMARK 500 16 PRO A 5 -77.30 -83.09 REMARK 500 16 SER A 38 31.33 -95.92 REMARK 500 16 TYR A 44 70.73 -114.46 REMARK 500 17 PRO A 5 -76.63 -83.96 REMARK 500 17 SER A 38 35.66 -96.31 REMARK 500 REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34671 RELATED DB: BMRB REMARK 900 STRUCTURE OF VISCOTOXIN A3 FROM VISCUM ALBUM IN THE COMPLEX WITH REMARK 900 DPC MICELLES DBREF 7PVB A 1 46 UNP P01538 THN3_VISAL 27 72 SEQRES 1 A 46 LYS SER CYS CYS PRO ASN THR THR GLY ARG ASN ILE TYR SEQRES 2 A 46 ASN ALA CYS ARG LEU THR GLY ALA PRO ARG PRO THR CYS SEQRES 3 A 46 ALA LYS LEU SER GLY CYS LYS ILE ILE SER GLY SER THR SEQRES 4 A 46 CYS PRO SER ASP TYR PRO LYS HELIX 1 AA1 ASN A 6 GLY A 20 1 15 HELIX 2 AA2 PRO A 22 GLY A 31 1 10 SHEET 1 AA1 2 SER A 2 CYS A 3 0 SHEET 2 AA1 2 LYS A 33 ILE A 34 -1 O LYS A 33 N CYS A 3 SSBOND 1 CYS A 3 CYS A 40 1555 1555 1.91 SSBOND 2 CYS A 4 CYS A 32 1555 1555 1.95 SSBOND 3 CYS A 16 CYS A 26 1555 1555 2.01 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 TER 665 LYS A 46 ENDMDL MODEL 2 TER 665 LYS A 46 ENDMDL MODEL 3 TER 665 LYS A 46 ENDMDL MODEL 4 TER 665 LYS A 46 ENDMDL MODEL 5 TER 665 LYS A 46 ENDMDL MODEL 6 TER 665 LYS A 46 ENDMDL MODEL 7 TER 665 LYS A 46 ENDMDL MODEL 8 TER 665 LYS A 46 ENDMDL MODEL 9 TER 665 LYS A 46 ENDMDL MODEL 10 TER 665 LYS A 46 ENDMDL MODEL 11 TER 665 LYS A 46 ENDMDL MODEL 12 TER 665 LYS A 46 ENDMDL MODEL 13 TER 665 LYS A 46 ENDMDL MODEL 14 TER 665 LYS A 46 ENDMDL MODEL 15 TER 665 LYS A 46 ENDMDL MODEL 16 TER 665 LYS A 46 ENDMDL MODEL 17 TER 665 LYS A 46 ENDMDL MODEL 18 TER 665 LYS A 46 ENDMDL MODEL 19 TER 665 LYS A 46 ENDMDL MODEL 20 TER 665 LYS A 46 ENDMDL CONECT 39 566 CONECT 49 453 CONECT 224 374 CONECT 374 224 CONECT 453 49 CONECT 566 39 MASTER 140 0 0 2 2 0 0 6 332 1 6 4 END