HEADER HYDROLASE 18-OCT-21 7Q1C TITLE CRYSTAL STRUCTURE OF TRYPANOSOMA CRUZI HISTONE DEACETYLASE DAC2 TITLE 2 COMPLEXED WITH A HYDROXAMATE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE DEACETYLASE DAC2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI; SOURCE 3 ORGANISM_TAXID: 5693; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS EPIGENETICS, TRYPANOSOMA CRUZI, HISTONE DEACETYLASE, DAC2, PATHOGEN, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.RAMOS-MORALES,M.MAREK,C.ROMIER REVDAT 3 31-JAN-24 7Q1C 1 REMARK REVDAT 2 02-FEB-22 7Q1C 1 JRNL REVDAT 1 15-DEC-21 7Q1C 0 JRNL AUTH M.MAREK,E.RAMOS-MORALES,G.F.A.PICCHI-CONSTANTE,T.BAYER, JRNL AUTH 2 C.NORSTROM,D.HERP,P.A.SALES-JUNIOR,E.P.GUERRA-SLOMPO, JRNL AUTH 3 K.HAUSMANN,A.CHAKRABARTI,T.B.SHAIK,A.MERZ,E.TROESCH, JRNL AUTH 4 K.SCHMIDTKUNZ,S.GOLDENBERG,R.J.PIERCE,M.M.MOURAO,M.JUNG, JRNL AUTH 5 J.SCHULTZ,W.SIPPL,N.I.T.ZANCHIN,C.ROMIER JRNL TITL SPECIES-SELECTIVE TARGETING OF PATHOGENS REVEALED BY THE JRNL TITL 2 ATYPICAL STRUCTURE AND ACTIVE SITE OF TRYPANOSOMA CRUZI JRNL TITL 3 HISTONE DEACETYLASE DAC2. JRNL REF CELL REP V. 37 10129 2021 JRNL REFN ESSN 2211-1247 JRNL PMID 34936867 JRNL DOI 10.1016/J.CELREP.2021.110129 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR., SECT. D: V. 68 352 2012 REMARK 1 REF 2 BIOL. CRYSTALLOGR. REMARK 1 REFN ISSN 0907-4449 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19RC4_4035 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 51399 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 5163 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1100 - 7.1400 1.00 3245 167 0.1552 0.1983 REMARK 3 2 7.1300 - 5.6700 1.00 3215 181 0.1688 0.1869 REMARK 3 3 5.6600 - 4.9500 1.00 3242 170 0.1526 0.1804 REMARK 3 4 4.9500 - 4.5000 1.00 3239 178 0.1242 0.1334 REMARK 3 5 4.5000 - 4.1800 1.00 3215 174 0.1319 0.1902 REMARK 3 6 4.1800 - 3.9300 1.00 3157 216 0.1458 0.1648 REMARK 3 7 3.9300 - 3.7300 1.00 3241 166 0.1554 0.1920 REMARK 3 8 3.7300 - 3.5700 1.00 3234 204 0.1740 0.2194 REMARK 3 9 3.5700 - 3.4300 1.00 3209 199 0.1793 0.1893 REMARK 3 10 3.4300 - 3.3200 1.00 3230 129 0.1909 0.2112 REMARK 3 11 3.3200 - 3.2100 1.00 3288 178 0.1939 0.2182 REMARK 3 12 3.2100 - 3.1200 1.00 3264 145 0.2170 0.2597 REMARK 3 13 3.1200 - 3.0400 1.00 3247 164 0.2355 0.2581 REMARK 3 14 3.0400 - 2.9600 1.00 3199 171 0.2381 0.2463 REMARK 3 15 2.9600 - 2.9000 1.00 3235 186 0.2261 0.2604 REMARK 3 16 2.9000 - 2.8300 1.00 3235 189 0.2304 0.2811 REMARK 3 17 2.8300 - 2.7800 1.00 3223 165 0.2408 0.3237 REMARK 3 18 2.7800 - 2.7300 1.00 3266 170 0.2448 0.2362 REMARK 3 19 2.7300 - 2.6800 1.00 3287 170 0.2469 0.3181 REMARK 3 20 2.6800 - 2.6300 1.00 3193 167 0.2673 0.2991 REMARK 3 21 2.6300 - 2.5900 1.00 3242 172 0.2681 0.2925 REMARK 3 22 2.5900 - 2.5500 1.00 3274 134 0.2837 0.3576 REMARK 3 23 2.5500 - 2.5100 1.00 3217 175 0.2941 0.3418 REMARK 3 24 2.5100 - 2.4800 1.00 3287 162 0.2834 0.3398 REMARK 3 25 2.4800 - 2.4400 1.00 3162 203 0.2889 0.2946 REMARK 3 26 2.4400 - 2.4100 1.00 3330 131 0.3055 0.3145 REMARK 3 27 2.4100 - 2.3800 1.00 3215 174 0.3059 0.3348 REMARK 3 28 2.3800 - 2.3500 1.00 3187 193 0.3058 0.2794 REMARK 3 29 2.3500 - 2.3200 1.00 3227 175 0.3075 0.3094 REMARK 3 30 2.3200 - 2.3000 0.96 3122 155 0.3258 0.3667 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.314 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.335 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6668 REMARK 3 ANGLE : 0.927 9055 REMARK 3 CHIRALITY : 0.054 1023 REMARK 3 PLANARITY : 0.007 1170 REMARK 3 DIHEDRAL : 13.553 2403 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 87.7212 -91.3260 1.0871 REMARK 3 T TENSOR REMARK 3 T11: 0.2662 T22: 0.2780 REMARK 3 T33: 0.2987 T12: 0.0206 REMARK 3 T13: -0.0164 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.3741 L22: 0.4199 REMARK 3 L33: 0.9229 L12: 0.0957 REMARK 3 L13: 0.0000 L23: 0.2695 REMARK 3 S TENSOR REMARK 3 S11: -0.0242 S12: 0.0199 S13: -0.0168 REMARK 3 S21: -0.0123 S22: -0.0349 S23: 0.0264 REMARK 3 S31: -0.0710 S32: -0.1225 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 53.9580 -92.9589 -40.9190 REMARK 3 T TENSOR REMARK 3 T11: 0.2493 T22: 0.2902 REMARK 3 T33: 0.2812 T12: -0.0088 REMARK 3 T13: -0.0001 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 0.3478 L22: 0.6987 REMARK 3 L33: 1.0103 L12: 0.1553 REMARK 3 L13: -0.2254 L23: -0.3587 REMARK 3 S TENSOR REMARK 3 S11: -0.0280 S12: -0.0384 S13: -0.0108 REMARK 3 S21: -0.0385 S22: -0.0759 S23: -0.0578 REMARK 3 S31: -0.0166 S32: 0.1431 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7Q1C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1292118753. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979957 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52026 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.19500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.78 REMARK 200 R MERGE FOR SHELL (I) : 1.68700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.230 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1T67 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7.5%(W/V) PEG 8K, 0.1 M BIS-TRIS PH REMARK 280 6.3, 0.2 M MGCL2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.67650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 3 REMARK 465 THR A 4 REMARK 465 ASP A 5 REMARK 465 ALA A 6 REMARK 465 VAL A 7 REMARK 465 ALA A 8 REMARK 465 GLY A 9 REMARK 465 LYS A 10 REMARK 465 THR A 11 REMARK 465 SER A 12 REMARK 465 LYS A 55 REMARK 465 LYS A 56 REMARK 465 SER A 57 REMARK 465 GLY A 58 REMARK 465 ASP A 59 REMARK 465 ALA A 60 REMARK 465 MET A 61 REMARK 465 ASN A 62 REMARK 465 THR A 63 REMARK 465 LEU A 469 REMARK 465 ASN A 470 REMARK 465 GLN A 471 REMARK 465 GLU A 472 REMARK 465 GLN A 473 REMARK 465 ASP A 474 REMARK 465 GLU A 475 REMARK 465 GLU A 476 REMARK 465 GLU A 477 REMARK 465 ASP A 478 REMARK 465 ALA A 479 REMARK 465 GLU A 480 REMARK 465 ASP A 481 REMARK 465 SER A 482 REMARK 465 GLY A 483 REMARK 465 LEU A 484 REMARK 465 GLU A 485 REMARK 465 VAL A 486 REMARK 465 LEU A 487 REMARK 465 PHE A 488 REMARK 465 GLN A 489 REMARK 465 MET B 3 REMARK 465 THR B 4 REMARK 465 ASP B 5 REMARK 465 ALA B 6 REMARK 465 VAL B 7 REMARK 465 ALA B 8 REMARK 465 GLY B 9 REMARK 465 LYS B 10 REMARK 465 THR B 11 REMARK 465 SER B 12 REMARK 465 LYS B 55 REMARK 465 LYS B 56 REMARK 465 SER B 57 REMARK 465 GLY B 58 REMARK 465 ASP B 59 REMARK 465 ALA B 60 REMARK 465 MET B 61 REMARK 465 ASN B 62 REMARK 465 THR B 63 REMARK 465 ARG B 468 REMARK 465 LEU B 469 REMARK 465 ASN B 470 REMARK 465 GLN B 471 REMARK 465 GLU B 472 REMARK 465 GLN B 473 REMARK 465 ASP B 474 REMARK 465 GLU B 475 REMARK 465 GLU B 476 REMARK 465 GLU B 477 REMARK 465 ASP B 478 REMARK 465 ALA B 479 REMARK 465 GLU B 480 REMARK 465 ASP B 481 REMARK 465 SER B 482 REMARK 465 GLY B 483 REMARK 465 LEU B 484 REMARK 465 GLU B 485 REMARK 465 VAL B 486 REMARK 465 LEU B 487 REMARK 465 PHE B 488 REMARK 465 GLN B 489 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ALA B 337 O HOH B 601 2.05 REMARK 500 OE2 GLU B 156 O HOH B 602 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 155 -119.62 52.08 REMARK 500 SER A 202 27.22 -145.48 REMARK 500 ASN A 229 22.90 -146.89 REMARK 500 ALA A 368 -132.64 -169.68 REMARK 500 PHE B 87 -51.53 -131.17 REMARK 500 ASN B 155 -121.04 48.17 REMARK 500 SER B 202 33.07 -142.96 REMARK 500 ASN B 229 22.84 -142.68 REMARK 500 VAL B 288 79.44 -118.39 REMARK 500 ASN B 339 39.75 -143.30 REMARK 500 ALA B 368 -132.68 -169.46 REMARK 500 SER B 450 116.16 -23.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 502 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 235 O REMARK 620 2 ASP A 235 OD1 72.7 REMARK 620 3 ASP A 237 O 99.1 102.1 REMARK 620 4 HIS A 239 O 170.5 98.0 84.7 REMARK 620 5 SER A 258 OG 86.6 112.1 145.4 95.2 REMARK 620 6 MET A 259 O 77.7 145.5 65.2 111.8 83.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 237 OD1 REMARK 620 2 ASP A 237 OD2 54.7 REMARK 620 3 HIS A 239 ND1 97.7 149.0 REMARK 620 4 ASP A 328 OD2 109.5 87.2 90.1 REMARK 620 5 T56 A 504 N18 113.4 113.5 89.0 136.9 REMARK 620 6 T56 A 504 O19 90.4 82.3 114.8 146.1 31.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 503 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 248 O REMARK 620 2 ASP A 251 O 79.3 REMARK 620 3 VAL A 254 O 121.9 83.7 REMARK 620 4 PHE A 284 O 150.8 117.5 85.1 REMARK 620 5 HOH A 646 O 80.1 88.2 154.2 77.1 REMARK 620 6 HOH A 661 O 75.7 154.5 114.3 83.3 82.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 502 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 235 O REMARK 620 2 ASP B 235 OD1 71.0 REMARK 620 3 ASP B 237 O 100.0 103.7 REMARK 620 4 HIS B 239 O 171.1 101.4 86.2 REMARK 620 5 SER B 258 OG 85.3 111.3 144.2 93.5 REMARK 620 6 MET B 259 O 77.2 143.2 63.7 111.4 83.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 237 OD1 REMARK 620 2 ASP B 237 OD2 54.8 REMARK 620 3 HIS B 239 ND1 94.2 144.8 REMARK 620 4 ASP B 328 OD2 109.5 84.7 92.0 REMARK 620 5 T56 B 504 N18 113.4 118.1 87.6 137.0 REMARK 620 6 T56 B 504 O01 164.2 120.6 93.7 83.8 53.3 REMARK 620 7 T56 B 504 O19 85.4 88.4 107.1 155.1 32.9 79.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 503 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 248 O REMARK 620 2 ASP B 251 O 80.2 REMARK 620 3 VAL B 254 O 122.6 89.3 REMARK 620 4 PHE B 284 O 151.0 112.1 84.7 REMARK 620 5 HOH B 661 O 78.4 157.1 109.2 83.8 REMARK 620 6 HOH B 669 O 80.4 79.0 152.2 76.7 89.4 REMARK 620 N 1 2 3 4 5 DBREF 7Q1C A 3 489 PDB 7Q1C 7Q1C 3 489 DBREF 7Q1C B 3 489 PDB 7Q1C 7Q1C 3 489 SEQRES 1 A 467 MET THR ASP ALA VAL ALA GLY LYS THR SER LEU PRO PRO SEQRES 2 A 467 PRO VAL ALA ILE ILE VAL GLY HIS ASN ILE ASP ALA SER SEQRES 3 A 467 ALA MET PRO LEU THR TYR GLU ARG ASN ARG PHE VAL ILE SEQRES 4 A 467 ASP MET LEU GLN HIS TYR ALA CYS PRO VAL PHE SER HIS SEQRES 5 A 467 LYS LYS SER GLY ASP ALA MET ASN THR VAL SER SER ASP SEQRES 6 A 467 VAL PHE GLU TRP VAL LEU GLU PRO PHE PRO VAL VAL GLY SEQRES 7 A 467 VAL GLU ASP MET THR ALA PHE HIS ASP ARG ALA TYR LEU SEQRES 8 A 467 ASN TYR LEU SER ILE ARG GLU ALA LEU SER GLU VAL ASP SEQRES 9 A 467 GLU ARG ALA SER THR VAL LYS PRO PRO LEU ARG VAL LEU SEQRES 10 A 467 PRO ASP LEU VAL PRO ILE PRO ALA ASP GLU GLU TYR GLY SEQRES 11 A 467 LEU VAL ASN GLU ASN MET PRO PHE VAL GLY MET TRP ARG SEQRES 12 A 467 THR ILE GLN ALA THR VAL SER GLY THR LEU LEU ALA ALA SEQRES 13 A 467 ARG LEU LEU ALA GLN PRO GLY ARG PHE ALA ALA ILE HIS SEQRES 14 A 467 TRP PHE GLY GLY ARG HIS HIS ALA LYS LYS SER THR ALA SEQRES 15 A 467 GLY GLY PHE CYS PHE ALA ASN ASP VAL VAL LEU GLY VAL SEQRES 16 A 467 LEU GLU LEU LYS LYS LEU LEU SER SER ASP LYS ASN GLY SEQRES 17 A 467 ILE LEU VAL VAL ASP VAL ASP ALA HIS HIS GLY ASP GLY SEQRES 18 A 467 THR GLN SER ALA PHE LEU HIS ASP ASN SER VAL LEU THR SEQRES 19 A 467 LEU SER MET HIS ALA HIS GLY VAL GLY ILE PHE PRO GLY SEQRES 20 A 467 THR GLY GLY ILE GLU GLU ILE GLY ALA GLY LEU GLY ARG SEQRES 21 A 467 GLY PHE THR MET ASN VAL PRO LEU PRO GLU GLY ALA THR SEQRES 22 A 467 ASP ILE LEU ALA VAL THR LEU MET TYR ARG SER ILE HIS SEQRES 23 A 467 PHE ALA PHE LYS LYS LEU GLY GLU GLY LEU ALA ALA ILE SEQRES 24 A 467 VAL ILE VAL CYS GLY SER ASP ALA LEU SER GLY ASP PRO SEQRES 25 A 467 LEU GLY ALA LEU ASN LEU THR VAL GLY GLY MET GLN SER SEQRES 26 A 467 ILE ILE ARG LEU LEU LEU LYS GLU ALA ALA ARG ARG SER SEQRES 27 A 467 LEU LYS VAL LEU LEU LEU GLY ALA GLY GLY TYR VAL ASP SEQRES 28 A 467 THR SER CYS ALA ARG LEU ALA GLY VAL VAL THR LYS ASP SEQRES 29 A 467 VAL LEU SER CYS ALA ALA ALA MET ARG LEU GLY LYS THR SEQRES 30 A 467 GLU TYR PHE GLY ASP SER ALA ASN LEU GLY ASP ASN LEU SEQRES 31 A 467 GLY VAL ALA VAL PRO GLU GLY CYS GLU TYR PHE THR ARG SEQRES 32 A 467 TYR GLY PRO SER PHE LEU MET HIS GLY LEU PRO PRO ALA SEQRES 33 A 467 ARG VAL SER LYS LEU TYR ARG LEU PRO TYR GLY SER PRO SEQRES 34 A 467 LEU PHE MET ARG MET GLN ARG ALA ALA THR LYS GLU ALA SEQRES 35 A 467 LEU ARG ARG ARG LEU ASN GLN GLU GLN ASP GLU GLU GLU SEQRES 36 A 467 ASP ALA GLU ASP SER GLY LEU GLU VAL LEU PHE GLN SEQRES 1 B 467 MET THR ASP ALA VAL ALA GLY LYS THR SER LEU PRO PRO SEQRES 2 B 467 PRO VAL ALA ILE ILE VAL GLY HIS ASN ILE ASP ALA SER SEQRES 3 B 467 ALA MET PRO LEU THR TYR GLU ARG ASN ARG PHE VAL ILE SEQRES 4 B 467 ASP MET LEU GLN HIS TYR ALA CYS PRO VAL PHE SER HIS SEQRES 5 B 467 LYS LYS SER GLY ASP ALA MET ASN THR VAL SER SER ASP SEQRES 6 B 467 VAL PHE GLU TRP VAL LEU GLU PRO PHE PRO VAL VAL GLY SEQRES 7 B 467 VAL GLU ASP MET THR ALA PHE HIS ASP ARG ALA TYR LEU SEQRES 8 B 467 ASN TYR LEU SER ILE ARG GLU ALA LEU SER GLU VAL ASP SEQRES 9 B 467 GLU ARG ALA SER THR VAL LYS PRO PRO LEU ARG VAL LEU SEQRES 10 B 467 PRO ASP LEU VAL PRO ILE PRO ALA ASP GLU GLU TYR GLY SEQRES 11 B 467 LEU VAL ASN GLU ASN MET PRO PHE VAL GLY MET TRP ARG SEQRES 12 B 467 THR ILE GLN ALA THR VAL SER GLY THR LEU LEU ALA ALA SEQRES 13 B 467 ARG LEU LEU ALA GLN PRO GLY ARG PHE ALA ALA ILE HIS SEQRES 14 B 467 TRP PHE GLY GLY ARG HIS HIS ALA LYS LYS SER THR ALA SEQRES 15 B 467 GLY GLY PHE CYS PHE ALA ASN ASP VAL VAL LEU GLY VAL SEQRES 16 B 467 LEU GLU LEU LYS LYS LEU LEU SER SER ASP LYS ASN GLY SEQRES 17 B 467 ILE LEU VAL VAL ASP VAL ASP ALA HIS HIS GLY ASP GLY SEQRES 18 B 467 THR GLN SER ALA PHE LEU HIS ASP ASN SER VAL LEU THR SEQRES 19 B 467 LEU SER MET HIS ALA HIS GLY VAL GLY ILE PHE PRO GLY SEQRES 20 B 467 THR GLY GLY ILE GLU GLU ILE GLY ALA GLY LEU GLY ARG SEQRES 21 B 467 GLY PHE THR MET ASN VAL PRO LEU PRO GLU GLY ALA THR SEQRES 22 B 467 ASP ILE LEU ALA VAL THR LEU MET TYR ARG SER ILE HIS SEQRES 23 B 467 PHE ALA PHE LYS LYS LEU GLY GLU GLY LEU ALA ALA ILE SEQRES 24 B 467 VAL ILE VAL CYS GLY SER ASP ALA LEU SER GLY ASP PRO SEQRES 25 B 467 LEU GLY ALA LEU ASN LEU THR VAL GLY GLY MET GLN SER SEQRES 26 B 467 ILE ILE ARG LEU LEU LEU LYS GLU ALA ALA ARG ARG SER SEQRES 27 B 467 LEU LYS VAL LEU LEU LEU GLY ALA GLY GLY TYR VAL ASP SEQRES 28 B 467 THR SER CYS ALA ARG LEU ALA GLY VAL VAL THR LYS ASP SEQRES 29 B 467 VAL LEU SER CYS ALA ALA ALA MET ARG LEU GLY LYS THR SEQRES 30 B 467 GLU TYR PHE GLY ASP SER ALA ASN LEU GLY ASP ASN LEU SEQRES 31 B 467 GLY VAL ALA VAL PRO GLU GLY CYS GLU TYR PHE THR ARG SEQRES 32 B 467 TYR GLY PRO SER PHE LEU MET HIS GLY LEU PRO PRO ALA SEQRES 33 B 467 ARG VAL SER LYS LEU TYR ARG LEU PRO TYR GLY SER PRO SEQRES 34 B 467 LEU PHE MET ARG MET GLN ARG ALA ALA THR LYS GLU ALA SEQRES 35 B 467 LEU ARG ARG ARG LEU ASN GLN GLU GLN ASP GLU GLU GLU SEQRES 36 B 467 ASP ALA GLU ASP SER GLY LEU GLU VAL LEU PHE GLN HET ZN A 501 1 HET K A 502 1 HET K A 503 1 HET T56 A 504 19 HET ZN B 501 1 HET K B 502 1 HET K B 503 1 HET T56 B 504 19 HETNAM ZN ZINC ION HETNAM K POTASSIUM ION HETNAM T56 (E)-3-DIBENZOFURAN-4-YL-N-OXIDANYL-PROP-2-ENAMIDE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 K 4(K 1+) FORMUL 6 T56 2(C15 H11 N O3) FORMUL 11 HOH *230(H2 O) HELIX 1 AA1 MET A 30 TYR A 34 5 5 HELIX 2 AA2 GLU A 35 TYR A 47 1 13 HELIX 3 AA3 CYS A 49 SER A 53 5 5 HELIX 4 AA4 GLY A 80 MET A 84 5 5 HELIX 5 AA5 ASP A 89 ARG A 99 1 11 HELIX 6 AA6 GLU A 100 LEU A 102 5 3 HELIX 7 AA7 ILE A 145 GLU A 149 5 5 HELIX 8 AA8 VAL A 154 MET A 158 5 5 HELIX 9 AA9 GLY A 162 GLN A 183 1 22 HELIX 10 AB1 ASN A 211 LEU A 224 1 14 HELIX 11 AB2 GLY A 241 PHE A 248 1 8 HELIX 12 AB3 ALA A 278 ARG A 282 5 5 HELIX 13 AB4 THR A 295 GLY A 315 1 21 HELIX 14 AB5 THR A 341 ARG A 359 1 19 HELIX 15 AB6 VAL A 372 LEU A 396 1 25 HELIX 16 AB7 TYR A 422 TYR A 426 5 5 HELIX 17 AB8 SER A 450 LEU A 465 1 16 HELIX 18 AB9 MET B 30 TYR B 34 5 5 HELIX 19 AC1 GLU B 35 TYR B 47 1 13 HELIX 20 AC2 CYS B 49 SER B 53 5 5 HELIX 21 AC3 GLY B 80 MET B 84 5 5 HELIX 22 AC4 ASP B 89 ARG B 99 1 11 HELIX 23 AC5 GLU B 100 LEU B 102 5 3 HELIX 24 AC6 ILE B 145 GLU B 149 5 5 HELIX 25 AC7 VAL B 154 MET B 158 5 5 HELIX 26 AC8 GLY B 162 GLN B 183 1 22 HELIX 27 AC9 ASN B 211 LEU B 224 1 14 HELIX 28 AD1 GLY B 241 PHE B 248 1 8 HELIX 29 AD2 ALA B 278 ARG B 282 5 5 HELIX 30 AD3 THR B 295 GLY B 315 1 21 HELIX 31 AD4 THR B 341 SER B 360 1 20 HELIX 32 AD5 VAL B 372 ARG B 395 1 24 HELIX 33 AD6 TYR B 422 GLY B 427 5 6 HELIX 34 AD7 SER B 450 ALA B 459 1 10 HELIX 35 AD8 ALA B 460 ARG B 467 1 8 SHEET 1 AA1 8 PHE A 69 VAL A 72 0 SHEET 2 AA1 8 VAL A 17 ILE A 20 1 N ILE A 19 O GLU A 70 SHEET 3 AA1 8 ALA A 188 HIS A 191 1 O ILE A 190 N ALA A 18 SHEET 4 AA1 8 LYS A 362 LEU A 366 1 O LEU A 365 N HIS A 191 SHEET 5 AA1 8 LEU A 318 VAL A 324 1 N ILE A 323 O LEU A 366 SHEET 6 AA1 8 GLY A 230 ASP A 235 1 N GLY A 230 O ALA A 319 SHEET 7 AA1 8 VAL A 254 ALA A 261 1 O LEU A 257 N ASP A 235 SHEET 8 AA1 8 THR A 285 LEU A 290 1 O LEU A 290 N HIS A 260 SHEET 1 AA2 8 PHE B 69 VAL B 72 0 SHEET 2 AA2 8 VAL B 17 ILE B 20 1 N ILE B 19 O GLU B 70 SHEET 3 AA2 8 ALA B 188 HIS B 191 1 O ILE B 190 N ALA B 18 SHEET 4 AA2 8 LYS B 362 LEU B 366 1 O LEU B 365 N HIS B 191 SHEET 5 AA2 8 LEU B 318 VAL B 324 1 N ILE B 323 O LEU B 364 SHEET 6 AA2 8 GLY B 230 ASP B 235 1 N LEU B 232 O VAL B 322 SHEET 7 AA2 8 VAL B 254 ALA B 261 1 O LEU B 257 N VAL B 233 SHEET 8 AA2 8 THR B 285 LEU B 290 1 O LEU B 290 N HIS B 260 LINK O ASP A 235 K K A 502 1555 1555 2.78 LINK OD1 ASP A 235 K K A 502 1555 1555 2.72 LINK OD1 ASP A 237 ZN ZN A 501 1555 1555 2.25 LINK OD2 ASP A 237 ZN ZN A 501 1555 1555 2.57 LINK O ASP A 237 K K A 502 1555 1555 2.73 LINK ND1 HIS A 239 ZN ZN A 501 1555 1555 2.29 LINK O HIS A 239 K K A 502 1555 1555 2.75 LINK O PHE A 248 K K A 503 1555 1555 2.64 LINK O ASP A 251 K K A 503 1555 1555 2.78 LINK O VAL A 254 K K A 503 1555 1555 2.51 LINK OG SER A 258 K K A 502 1555 1555 2.85 LINK O MET A 259 K K A 502 1555 1555 2.61 LINK O PHE A 284 K K A 503 1555 1555 2.94 LINK OD2 ASP A 328 ZN ZN A 501 1555 1555 2.24 LINK ZN ZN A 501 N18 T56 A 504 1555 1555 2.67 LINK ZN ZN A 501 O19 T56 A 504 1555 1555 2.11 LINK K K A 503 O HOH A 646 1555 1555 2.71 LINK K K A 503 O HOH A 661 1555 1555 2.81 LINK O ASP B 235 K K B 502 1555 1555 2.79 LINK OD1 ASP B 235 K K B 502 1555 1555 2.70 LINK OD1 ASP B 237 ZN ZN B 501 1555 1555 2.18 LINK OD2 ASP B 237 ZN ZN B 501 1555 1555 2.58 LINK O ASP B 237 K K B 502 1555 1555 2.73 LINK ND1 HIS B 239 ZN ZN B 501 1555 1555 2.31 LINK O HIS B 239 K K B 502 1555 1555 2.69 LINK O PHE B 248 K K B 503 1555 1555 2.62 LINK O ASP B 251 K K B 503 1555 1555 2.87 LINK O VAL B 254 K K B 503 1555 1555 2.52 LINK OG SER B 258 K K B 502 1555 1555 2.85 LINK O MET B 259 K K B 502 1555 1555 2.63 LINK O PHE B 284 K K B 503 1555 1555 3.07 LINK OD2 ASP B 328 ZN ZN B 501 1555 1555 2.19 LINK ZN ZN B 501 N18 T56 B 504 1555 1555 2.62 LINK ZN ZN B 501 O01 T56 B 504 1555 1555 2.56 LINK ZN ZN B 501 O19 T56 B 504 1555 1555 2.10 LINK K K B 503 O HOH B 661 1555 1555 2.77 LINK K K B 503 O HOH B 669 1555 1555 2.68 CISPEP 1 GLU A 74 PRO A 75 0 0.81 CISPEP 2 PRO A 134 PRO A 135 0 5.78 CISPEP 3 PHE A 267 PRO A 268 0 -5.83 CISPEP 4 GLY A 427 PRO A 428 0 2.48 CISPEP 5 GLU B 74 PRO B 75 0 -6.24 CISPEP 6 PRO B 134 PRO B 135 0 5.89 CISPEP 7 PHE B 267 PRO B 268 0 -2.63 CISPEP 8 GLY B 427 PRO B 428 0 4.23 CRYST1 66.071 95.353 96.920 90.00 103.50 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015135 0.000000 0.003634 0.00000 SCALE2 0.000000 0.010487 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010611 0.00000