HEADER STRUCTURAL PROTEIN 25-OCT-21 7Q2J TITLE QUATERNARY COMPLEX OF HUMAN WDR5 AND PVHL:ELONGINC:ELONGINB BOUND TO TITLE 2 PROTAC HOMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELONGIN-B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ELOB,ELONGIN 18 KDA SUBUNIT,RNA POLYMERASE II TRANSCRIPTION COMPND 5 FACTOR SIII SUBUNIT B,SIII P18,TRANSCRIPTION ELONGATION FACTOR B COMPND 6 POLYPEPTIDE 2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ELONGIN-C; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: ELOC,ELONGIN 15 KDA SUBUNIT,RNA POLYMERASE II TRANSCRIPTION COMPND 12 FACTOR SIII SUBUNIT C,SIII P15,TRANSCRIPTION ELONGATION FACTOR B COMPND 13 POLYPEPTIDE 1; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR; COMPND 17 CHAIN: C; COMPND 18 SYNONYM: PROTEIN G7,PVHL; COMPND 19 ENGINEERED: YES; COMPND 20 MOL_ID: 4; COMPND 21 MOLECULE: WD REPEAT-CONTAINING PROTEIN 5; COMPND 22 CHAIN: D; COMPND 23 SYNONYM: BMP2-INDUCED 3-KB GENE PROTEIN; COMPND 24 ENGINEERED: YES; COMPND 25 OTHER_DETAILS: COMPND 26 GTQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS COMPND 27 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT COMPND 28 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI COMPND 29 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ COMPND 30 GHTDVVISTACHPTENIIASAALENDKTIKLWKSDC SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ELOB, TCEB2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: ELOC, TCEB1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: VHL; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 21 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 24 ORGANISM_COMMON: HUMAN; SOURCE 25 ORGANISM_TAXID: 9606; SOURCE 26 GENE: WDR5, BIG3; SOURCE 27 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 28 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PROTAC, WDR5, VHL, QUATERNARY COMPLEX, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.KRAEMER,A.DOELLE,M.P.SCHWALM,B.ADHIKARI,E.WOLF,S.KNAPP,STRUCTURAL AUTHOR 2 GENOMICS CONSORTIUM (SGC) REVDAT 3 31-JAN-24 7Q2J 1 REMARK REVDAT 2 22-NOV-23 7Q2J 1 JRNL REMARK REVDAT 1 24-NOV-21 7Q2J 0 JRNL AUTH M.P.SCHWALM,A.KRAMER,A.DOLLE,J.WECKESSER,X.YU,J.JIN, JRNL AUTH 2 K.SAXENA,S.KNAPP JRNL TITL TRACKING THE PROTAC DEGRADATION PATHWAY IN LIVING CELLS JRNL TITL 2 HIGHLIGHTS THE IMPORTANCE OF TERNARY COMPLEX MEASUREMENT FOR JRNL TITL 3 PROTAC OPTIMIZATION. JRNL REF CELL CHEM BIOL V. 30 753 2023 JRNL REFN ESSN 2451-9456 JRNL PMID 37354907 JRNL DOI 10.1016/J.CHEMBIOL.2023.06.002 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 25571 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1368 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1896 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.4670 REMARK 3 BIN FREE R VALUE SET COUNT : 104 REMARK 3 BIN FREE R VALUE : 0.4740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4932 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 24 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.83000 REMARK 3 B22 (A**2) : -9.07000 REMARK 3 B33 (A**2) : 10.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.99000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.596 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.332 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.481 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.091 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5129 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4699 ; 0.003 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6999 ; 1.429 ; 1.637 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10822 ; 1.183 ; 1.594 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 637 ; 7.522 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 234 ;34.543 ;22.692 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 791 ;19.629 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;23.442 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 688 ; 0.054 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5959 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1145 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7Q2J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1292118901. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999998 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26976 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 47.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2H9M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% PEG 3350 0.4 M KSCN 0.1 M HEPES REMARK 280 6.8, PH 6.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 95.40450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 104 REMARK 465 GLY B 48 REMARK 465 PRO B 49 REMARK 465 GLY B 50 REMARK 465 GLN B 51 REMARK 465 PHE B 52 REMARK 465 ALA B 53 REMARK 465 GLU B 54 REMARK 465 ASN B 55 REMARK 465 GLU B 56 REMARK 465 MET C 17 REMARK 465 ASN C 18 REMARK 465 THR C 19 REMARK 465 ILE C 20 REMARK 465 HIS C 21 REMARK 465 HIS C 22 REMARK 465 HIS C 23 REMARK 465 HIS C 24 REMARK 465 HIS C 25 REMARK 465 HIS C 26 REMARK 465 ASN C 27 REMARK 465 THR C 28 REMARK 465 SER C 29 REMARK 465 GLY C 30 REMARK 465 SER C 31 REMARK 465 GLY C 32 REMARK 465 GLY C 33 REMARK 465 GLY C 34 REMARK 465 GLY C 35 REMARK 465 GLY C 36 REMARK 465 ARG C 37 REMARK 465 LEU C 38 REMARK 465 VAL C 39 REMARK 465 PRO C 40 REMARK 465 ARG C 41 REMARK 465 GLY C 42 REMARK 465 SER C 43 REMARK 465 MET C 44 REMARK 465 SER C 45 REMARK 465 GLU C 46 REMARK 465 ASN C 47 REMARK 465 LEU C 48 REMARK 465 TYR C 49 REMARK 465 PHE C 50 REMARK 465 GLN C 51 REMARK 465 GLY C 52 REMARK 465 SER C 53 REMARK 465 MET C 54 REMARK 465 GLU C 55 REMARK 465 ALA C 56 REMARK 465 GLY C 57 REMARK 465 ARG C 58 REMARK 465 ILE C 206 REMARK 465 ALA C 207 REMARK 465 HIS C 208 REMARK 465 GLN C 209 REMARK 465 ARG C 210 REMARK 465 MET C 211 REMARK 465 GLY C 212 REMARK 465 ASP C 213 REMARK 465 GLY D 23 REMARK 465 THR D 24 REMARK 465 GLN D 25 REMARK 465 SER D 26 REMARK 465 LYS D 27 REMARK 465 PRO D 28 REMARK 465 THR D 29 REMARK 465 CYS D 334 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 19 CD CE NZ REMARK 470 GLU A 26 CG CD OE1 OE2 REMARK 470 ARG A 29 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 30 CG1 CG2 CD1 REMARK 470 GLN A 65 CG CD OE1 NE2 REMARK 470 LEU A 99 CG CD1 CD2 REMARK 470 SER B 47 OG REMARK 470 THR B 57 OG1 CG2 REMARK 470 SER B 87 OG REMARK 470 LEU C 169 CG CD1 CD2 REMARK 470 LEU C 178 CG CD1 CD2 REMARK 470 ARG C 182 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 196 CG CD CE NZ REMARK 470 GLU C 199 CG CD OE1 OE2 REMARK 470 ARG C 200 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 203 CG CD OE1 NE2 REMARK 470 GLU C 204 CG CD OE1 OE2 REMARK 470 ARG C 205 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 32 CG CD CE NZ REMARK 470 LYS D 78 CD CE NZ REMARK 470 LYS D 87 CG CD CE NZ REMARK 470 LYS D 109 CG CD CE NZ REMARK 470 LYS D 120 CG CD CE NZ REMARK 470 LYS D 159 CG CD CE NZ REMARK 470 LYS D 162 CG CD CE NZ REMARK 470 ARG D 181 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 207 CG CD CE NZ REMARK 470 ILE D 210 CG1 CG2 CD1 REMARK 470 ASP D 211 CG OD1 OD2 REMARK 470 ASP D 212 CG OD1 OD2 REMARK 470 ASP D 213 CG OD1 OD2 REMARK 470 ASN D 214 CG OD1 ND2 REMARK 470 LYS D 227 CG CD CE NZ REMARK 470 SER D 244 OG REMARK 470 LYS D 245 CG CD CE NZ REMARK 470 LYS D 247 CG CD CE NZ REMARK 470 LYS D 256 CG CD CE NZ REMARK 470 LYS D 272 CG CD CE NZ REMARK 470 LYS D 325 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 10 -116.08 58.37 REMARK 500 ASP A 47 -84.67 70.61 REMARK 500 ASP A 48 20.58 -141.70 REMARK 500 ALA A 71 64.34 -159.08 REMARK 500 ASP A 82 -116.91 55.43 REMARK 500 LEU B 37 -8.89 -56.36 REMARK 500 ASN B 58 -4.90 66.72 REMARK 500 ASP B 111 73.62 60.33 REMARK 500 ARG C 79 43.61 -93.60 REMARK 500 VAL C 83 98.50 -65.30 REMARK 500 ASN C 90 -171.70 -65.14 REMARK 500 PRO C 102 155.88 -46.59 REMARK 500 HIS C 125 15.84 55.50 REMARK 500 GLN C 132 -11.84 79.70 REMARK 500 PRO C 172 -34.27 -38.29 REMARK 500 HIS C 191 152.22 -47.64 REMARK 500 LYS C 196 5.71 -61.70 REMARK 500 ASP C 197 -35.00 -131.69 REMARK 500 LYS D 38 -41.28 -130.12 REMARK 500 ALA D 42 73.82 -113.53 REMARK 500 GLU D 80 -67.79 -95.53 REMARK 500 ASP D 108 2.55 -60.70 REMARK 500 LYS D 109 -4.59 83.96 REMARK 500 ASN D 130 -157.95 -140.17 REMARK 500 ASP D 150 0.96 -66.38 REMARK 500 GLU D 151 -2.03 84.02 REMARK 500 SER D 223 172.71 -56.08 REMARK 500 LEU D 234 36.27 -73.63 REMARK 500 LYS D 259 -54.33 -142.41 REMARK 500 ASN D 314 66.74 -66.82 REMARK 500 LEU D 321 -146.35 -88.29 REMARK 500 ASP D 324 -76.07 -116.41 REMARK 500 SER D 332 -156.77 -140.83 REMARK 500 REMARK 500 REMARK: NULL DBREF 7Q2J A 1 104 UNP Q15370 ELOB_HUMAN 1 104 DBREF 7Q2J B 17 112 UNP Q15369 ELOC_HUMAN 17 112 DBREF 7Q2J C 54 213 UNP P40337 VHL_HUMAN 54 213 DBREF 7Q2J D 24 334 UNP P61964 WDR5_HUMAN 24 334 SEQADV 7Q2J MET B 16 UNP Q15369 INITIATING METHIONINE SEQADV 7Q2J MET C 17 UNP P40337 INITIATING METHIONINE SEQADV 7Q2J ASN C 18 UNP P40337 EXPRESSION TAG SEQADV 7Q2J THR C 19 UNP P40337 EXPRESSION TAG SEQADV 7Q2J ILE C 20 UNP P40337 EXPRESSION TAG SEQADV 7Q2J HIS C 21 UNP P40337 EXPRESSION TAG SEQADV 7Q2J HIS C 22 UNP P40337 EXPRESSION TAG SEQADV 7Q2J HIS C 23 UNP P40337 EXPRESSION TAG SEQADV 7Q2J HIS C 24 UNP P40337 EXPRESSION TAG SEQADV 7Q2J HIS C 25 UNP P40337 EXPRESSION TAG SEQADV 7Q2J HIS C 26 UNP P40337 EXPRESSION TAG SEQADV 7Q2J ASN C 27 UNP P40337 EXPRESSION TAG SEQADV 7Q2J THR C 28 UNP P40337 EXPRESSION TAG SEQADV 7Q2J SER C 29 UNP P40337 EXPRESSION TAG SEQADV 7Q2J GLY C 30 UNP P40337 EXPRESSION TAG SEQADV 7Q2J SER C 31 UNP P40337 EXPRESSION TAG SEQADV 7Q2J GLY C 32 UNP P40337 EXPRESSION TAG SEQADV 7Q2J GLY C 33 UNP P40337 EXPRESSION TAG SEQADV 7Q2J GLY C 34 UNP P40337 EXPRESSION TAG SEQADV 7Q2J GLY C 35 UNP P40337 EXPRESSION TAG SEQADV 7Q2J GLY C 36 UNP P40337 EXPRESSION TAG SEQADV 7Q2J ARG C 37 UNP P40337 EXPRESSION TAG SEQADV 7Q2J LEU C 38 UNP P40337 EXPRESSION TAG SEQADV 7Q2J VAL C 39 UNP P40337 EXPRESSION TAG SEQADV 7Q2J PRO C 40 UNP P40337 EXPRESSION TAG SEQADV 7Q2J ARG C 41 UNP P40337 EXPRESSION TAG SEQADV 7Q2J GLY C 42 UNP P40337 EXPRESSION TAG SEQADV 7Q2J SER C 43 UNP P40337 EXPRESSION TAG SEQADV 7Q2J MET C 44 UNP P40337 EXPRESSION TAG SEQADV 7Q2J SER C 45 UNP P40337 EXPRESSION TAG SEQADV 7Q2J GLU C 46 UNP P40337 EXPRESSION TAG SEQADV 7Q2J ASN C 47 UNP P40337 EXPRESSION TAG SEQADV 7Q2J LEU C 48 UNP P40337 EXPRESSION TAG SEQADV 7Q2J TYR C 49 UNP P40337 EXPRESSION TAG SEQADV 7Q2J PHE C 50 UNP P40337 EXPRESSION TAG SEQADV 7Q2J GLN C 51 UNP P40337 EXPRESSION TAG SEQADV 7Q2J GLY C 52 UNP P40337 EXPRESSION TAG SEQADV 7Q2J SER C 53 UNP P40337 EXPRESSION TAG SEQADV 7Q2J GLY D 23 UNP P61964 EXPRESSION TAG SEQRES 1 A 104 MET ASP VAL PHE LEU MET ILE ARG ARG HIS LYS THR THR SEQRES 2 A 104 ILE PHE THR ASP ALA LYS GLU SER SER THR VAL PHE GLU SEQRES 3 A 104 LEU LYS ARG ILE VAL GLU GLY ILE LEU LYS ARG PRO PRO SEQRES 4 A 104 ASP GLU GLN ARG LEU TYR LYS ASP ASP GLN LEU LEU ASP SEQRES 5 A 104 ASP GLY LYS THR LEU GLY GLU CYS GLY PHE THR SER GLN SEQRES 6 A 104 THR ALA ARG PRO GLN ALA PRO ALA THR VAL GLY LEU ALA SEQRES 7 A 104 PHE ARG ALA ASP ASP THR PHE GLU ALA LEU CYS ILE GLU SEQRES 8 A 104 PRO PHE SER SER PRO PRO GLU LEU PRO ASP VAL MET LYS SEQRES 1 B 97 MET MET TYR VAL LYS LEU ILE SER SER ASP GLY HIS GLU SEQRES 2 B 97 PHE ILE VAL LYS ARG GLU HIS ALA LEU THR SER GLY THR SEQRES 3 B 97 ILE LYS ALA MET LEU SER GLY PRO GLY GLN PHE ALA GLU SEQRES 4 B 97 ASN GLU THR ASN GLU VAL ASN PHE ARG GLU ILE PRO SER SEQRES 5 B 97 HIS VAL LEU SER LYS VAL CYS MET TYR PHE THR TYR LYS SEQRES 6 B 97 VAL ARG TYR THR ASN SER SER THR GLU ILE PRO GLU PHE SEQRES 7 B 97 PRO ILE ALA PRO GLU ILE ALA LEU GLU LEU LEU MET ALA SEQRES 8 B 97 ALA ASN PHE LEU ASP CYS SEQRES 1 C 197 MET ASN THR ILE HIS HIS HIS HIS HIS HIS ASN THR SER SEQRES 2 C 197 GLY SER GLY GLY GLY GLY GLY ARG LEU VAL PRO ARG GLY SEQRES 3 C 197 SER MET SER GLU ASN LEU TYR PHE GLN GLY SER MET GLU SEQRES 4 C 197 ALA GLY ARG PRO ARG PRO VAL LEU ARG SER VAL ASN SER SEQRES 5 C 197 ARG GLU PRO SER GLN VAL ILE PHE CYS ASN ARG SER PRO SEQRES 6 C 197 ARG VAL VAL LEU PRO VAL TRP LEU ASN PHE ASP GLY GLU SEQRES 7 C 197 PRO GLN PRO TYR PRO THR LEU PRO PRO GLY THR GLY ARG SEQRES 8 C 197 ARG ILE HIS SER TYR ARG GLY HIS LEU TRP LEU PHE ARG SEQRES 9 C 197 ASP ALA GLY THR HIS ASP GLY LEU LEU VAL ASN GLN THR SEQRES 10 C 197 GLU LEU PHE VAL PRO SER LEU ASN VAL ASP GLY GLN PRO SEQRES 11 C 197 ILE PHE ALA ASN ILE THR LEU PRO VAL TYR THR LEU LYS SEQRES 12 C 197 GLU ARG CYS LEU GLN VAL VAL ARG SER LEU VAL LYS PRO SEQRES 13 C 197 GLU ASN TYR ARG ARG LEU ASP ILE VAL ARG SER LEU TYR SEQRES 14 C 197 GLU ASP LEU GLU ASP HIS PRO ASN VAL GLN LYS ASP LEU SEQRES 15 C 197 GLU ARG LEU THR GLN GLU ARG ILE ALA HIS GLN ARG MET SEQRES 16 C 197 GLY ASP SEQRES 1 D 312 GLY THR GLN SER LYS PRO THR PRO VAL LYS PRO ASN TYR SEQRES 2 D 312 ALA LEU LYS PHE THR LEU ALA GLY HIS THR LYS ALA VAL SEQRES 3 D 312 SER SER VAL LYS PHE SER PRO ASN GLY GLU TRP LEU ALA SEQRES 4 D 312 SER SER SER ALA ASP LYS LEU ILE LYS ILE TRP GLY ALA SEQRES 5 D 312 TYR ASP GLY LYS PHE GLU LYS THR ILE SER GLY HIS LYS SEQRES 6 D 312 LEU GLY ILE SER ASP VAL ALA TRP SER SER ASP SER ASN SEQRES 7 D 312 LEU LEU VAL SER ALA SER ASP ASP LYS THR LEU LYS ILE SEQRES 8 D 312 TRP ASP VAL SER SER GLY LYS CYS LEU LYS THR LEU LYS SEQRES 9 D 312 GLY HIS SER ASN TYR VAL PHE CYS CYS ASN PHE ASN PRO SEQRES 10 D 312 GLN SER ASN LEU ILE VAL SER GLY SER PHE ASP GLU SER SEQRES 11 D 312 VAL ARG ILE TRP ASP VAL LYS THR GLY LYS CYS LEU LYS SEQRES 12 D 312 THR LEU PRO ALA HIS SER ASP PRO VAL SER ALA VAL HIS SEQRES 13 D 312 PHE ASN ARG ASP GLY SER LEU ILE VAL SER SER SER TYR SEQRES 14 D 312 ASP GLY LEU CYS ARG ILE TRP ASP THR ALA SER GLY GLN SEQRES 15 D 312 CYS LEU LYS THR LEU ILE ASP ASP ASP ASN PRO PRO VAL SEQRES 16 D 312 SER PHE VAL LYS PHE SER PRO ASN GLY LYS TYR ILE LEU SEQRES 17 D 312 ALA ALA THR LEU ASP ASN THR LEU LYS LEU TRP ASP TYR SEQRES 18 D 312 SER LYS GLY LYS CYS LEU LYS THR TYR THR GLY HIS LYS SEQRES 19 D 312 ASN GLU LYS TYR CYS ILE PHE ALA ASN PHE SER VAL THR SEQRES 20 D 312 GLY GLY LYS TRP ILE VAL SER GLY SER GLU ASP ASN LEU SEQRES 21 D 312 VAL TYR ILE TRP ASN LEU GLN THR LYS GLU ILE VAL GLN SEQRES 22 D 312 LYS LEU GLN GLY HIS THR ASP VAL VAL ILE SER THR ALA SEQRES 23 D 312 CYS HIS PRO THR GLU ASN ILE ILE ALA SER ALA ALA LEU SEQRES 24 D 312 GLU ASN ASP LYS THR ILE LYS LEU TRP LYS SER ASP CYS HET 8KH D 401 72 HETNAM 8KH N-[5-[4-[[5-[[(2S)-3,3-DIMETHYL-1-[(2S,4R)-2-[[4-(4- HETNAM 2 8KH METHYL-1,3-THIAZOL-5-YL)PHENYL]METHYLCARBAMOYL]-4- HETNAM 3 8KH OXIDANYL-PYRROLIDIN-1-YL]-1-OXIDANYLIDENE-BUTAN-2- HETNAM 4 8KH YL]AMINO]-5-OXIDANYLIDENE-PENTYL]CARBAMOYL]PHENYL]-2- HETNAM 5 8KH (4-METHYLPIPERAZIN-1-YL)PHENYL]-6-OXIDANYLIDENE-4- HETNAM 6 8KH (TRIFLUOROMETHYL)-1H-PYRIDINE-3-CARBOXAMIDE HETSYN 8KH HOMER (CHEMICAL DEGRADER PROBE) FORMUL 5 8KH C52 H60 F3 N9 O7 S FORMUL 6 HOH *24(H2 O) HELIX 1 AA1 THR A 23 LYS A 36 1 14 HELIX 2 AA2 PRO A 38 ASP A 40 5 3 HELIX 3 AA3 ARG B 33 THR B 38 1 6 HELIX 4 AA4 SER B 39 SER B 47 1 9 HELIX 5 AA5 PRO B 66 THR B 84 1 19 HELIX 6 AA6 ALA B 96 ASP B 111 1 16 HELIX 7 AA7 THR C 157 VAL C 170 1 14 HELIX 8 AA8 LYS C 171 LEU C 178 5 8 HELIX 9 AA9 VAL C 181 ASP C 190 1 10 HELIX 10 AB1 VAL C 194 ARG C 205 1 12 SHEET 1 AA1 5 THR A 12 ALA A 18 0 SHEET 2 AA1 5 VAL A 3 ARG A 9 -1 N VAL A 3 O ALA A 18 SHEET 3 AA1 5 ALA A 73 ALA A 81 1 O VAL A 75 N MET A 6 SHEET 4 AA1 5 GLN A 42 LYS A 46 -1 N ARG A 43 O ALA A 78 SHEET 5 AA1 5 GLN A 49 LEU A 50 -1 O GLN A 49 N LYS A 46 SHEET 1 AA2 4 THR A 12 ALA A 18 0 SHEET 2 AA2 4 VAL A 3 ARG A 9 -1 N VAL A 3 O ALA A 18 SHEET 3 AA2 4 ALA A 73 ALA A 81 1 O VAL A 75 N MET A 6 SHEET 4 AA2 4 THR A 84 PHE A 85 -1 O THR A 84 N ALA A 81 SHEET 1 AA3 3 GLU B 28 LYS B 32 0 SHEET 2 AA3 3 TYR B 18 ILE B 22 -1 N LEU B 21 O PHE B 29 SHEET 3 AA3 3 GLU B 59 ASN B 61 1 O VAL B 60 N ILE B 22 SHEET 1 AA4 4 GLY C 106 TYR C 112 0 SHEET 2 AA4 4 PRO C 71 ASN C 78 -1 N SER C 72 O SER C 111 SHEET 3 AA4 4 ILE C 147 THR C 152 1 O ALA C 149 N ILE C 75 SHEET 4 AA4 4 LEU C 129 VAL C 130 -1 N LEU C 129 O THR C 152 SHEET 1 AA5 3 PRO C 95 PRO C 97 0 SHEET 2 AA5 3 VAL C 84 LEU C 89 -1 N TRP C 88 O GLN C 96 SHEET 3 AA5 3 LEU C 116 ASP C 121 -1 O LEU C 118 N VAL C 87 SHEET 1 AA6 4 ALA D 36 LEU D 41 0 SHEET 2 AA6 4 ILE D 327 LYS D 331 -1 O ILE D 327 N LEU D 41 SHEET 3 AA6 4 ILE D 315 ALA D 320 -1 N SER D 318 O LYS D 328 SHEET 4 AA6 4 VAL D 304 CYS D 309 -1 N ALA D 308 O ALA D 317 SHEET 1 AA7 4 VAL D 48 PHE D 53 0 SHEET 2 AA7 4 TRP D 59 SER D 64 -1 O SER D 63 N SER D 49 SHEET 3 AA7 4 LEU D 68 GLY D 73 -1 O TRP D 72 N LEU D 60 SHEET 4 AA7 4 PHE D 79 SER D 84 -1 O ILE D 83 N ILE D 69 SHEET 1 AA8 4 ILE D 90 TRP D 95 0 SHEET 2 AA8 4 LEU D 101 SER D 106 -1 O ALA D 105 N SER D 91 SHEET 3 AA8 4 LEU D 111 ASP D 115 -1 O TRP D 114 N LEU D 102 SHEET 4 AA8 4 CYS D 121 LEU D 125 -1 O LEU D 125 N LEU D 111 SHEET 1 AA9 4 VAL D 132 PHE D 137 0 SHEET 2 AA9 4 LEU D 143 SER D 148 -1 O VAL D 145 N ASN D 136 SHEET 3 AA9 4 VAL D 153 ASP D 157 -1 O ARG D 154 N SER D 146 SHEET 4 AA9 4 CYS D 163 LEU D 167 -1 O LEU D 167 N VAL D 153 SHEET 1 AB1 4 VAL D 174 PHE D 179 0 SHEET 2 AB1 4 LEU D 185 SER D 190 -1 O VAL D 187 N HIS D 178 SHEET 3 AB1 4 CYS D 195 ASP D 199 -1 O TRP D 198 N ILE D 186 SHEET 4 AB1 4 CYS D 205 LEU D 209 -1 O LEU D 206 N ILE D 197 SHEET 1 AB2 4 VAL D 217 PHE D 222 0 SHEET 2 AB2 4 TYR D 228 THR D 233 -1 O LEU D 230 N LYS D 221 SHEET 3 AB2 4 THR D 237 ASP D 242 -1 O LYS D 239 N ALA D 231 SHEET 4 AB2 4 LYS D 247 TYR D 252 -1 O LYS D 247 N ASP D 242 SHEET 1 AB3 4 ALA D 264 SER D 267 0 SHEET 2 AB3 4 TRP D 273 SER D 276 -1 O TRP D 273 N SER D 267 SHEET 3 AB3 4 VAL D 283 ASN D 287 -1 O TRP D 286 N ILE D 274 SHEET 4 AB3 4 ILE D 293 LEU D 297 -1 O LEU D 297 N VAL D 283 CRYST1 47.702 190.809 48.698 90.00 115.25 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020963 0.000000 0.009888 0.00000 SCALE2 0.000000 0.005241 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022705 0.00000