HEADER MEMBRANE PROTEIN 27-OCT-21 7Q38 TITLE CRYSTAL STRUCTURE OF THE MUTANT BACTERIORHODOPSIN PRESSURIZED WITH TITLE 2 ARGON COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIORHODOPSIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BR,BACTERIOOPSIN,BO; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HALOBACTERIUM SALINARUM (STRAIN ATCC 700922 / SOURCE 3 JCM 11081 / NRC-1); SOURCE 4 ORGANISM_COMMON: HALOBACTERIUM HALOBIUM; SOURCE 5 ORGANISM_TAXID: 64091; SOURCE 6 STRAIN: ATCC 700922 / JCM 11081 / NRC-1; SOURCE 7 GENE: BOP, VNG_1467G; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTON PUMP RHODOPSIN, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.MELNIKOV,M.RULEV,R.ASTASHKIN,K.KOVALEV,P.CARPENTIER,V.GORDELIY, AUTHOR 2 A.POPOV REVDAT 2 31-JAN-24 7Q38 1 REMARK REVDAT 1 27-APR-22 7Q38 0 JRNL AUTH I.MELNIKOV,P.OREKHOV,M.RULEV,K.KOVALEV,R.ASTASHKIN, JRNL AUTH 2 D.BRATANOV,Y.RYZHYKAU,T.BALANDIN,S.BUKHDRUKER,I.OKHRIMENKO, JRNL AUTH 3 V.BORSHCHEVSKIY,G.BOURENKOV,C.MUELLER-DIECKMANN, JRNL AUTH 4 P.VAN DER LINDEN,P.CARPENTIER,G.LEONARD,V.GORDELIY,A.POPOV JRNL TITL HIGH-PRESSURE CRYSTALLOGRAPHY SHOWS NOBLE GAS INTERVENTION JRNL TITL 2 INTO PROTEIN-LIPID INTERACTION AND SUGGESTS A MODEL FOR JRNL TITL 3 ANAESTHETIC ACTION. JRNL REF COMMUN BIOL V. 5 360 2022 JRNL REFN ESSN 2399-3642 JRNL PMID 35422073 JRNL DOI 10.1038/S42003-022-03233-Y REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 83.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 29182 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1569 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2097 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.5060 REMARK 3 BIN FREE R VALUE SET COUNT : 113 REMARK 3 BIN FREE R VALUE : 0.4850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1737 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 296 REMARK 3 SOLVENT ATOMS : 119 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : -0.67000 REMARK 3 B33 (A**2) : 0.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.091 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.872 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2119 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2284 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2837 ; 1.810 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5283 ; 1.421 ; 1.563 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 262 ; 5.014 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 71 ;32.406 ;19.718 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 297 ;12.033 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;17.897 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 253 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2181 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 440 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 952 ; 2.077 ; 2.354 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 950 ; 2.048 ; 2.345 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1200 ; 3.041 ; 3.524 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1200 ; 3.046 ; 3.523 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1166 ; 3.639 ; 3.141 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1159 ; 3.511 ; 3.129 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1609 ; 5.095 ; 4.361 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2495 ; 7.132 ;63.931 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2492 ; 7.134 ;35.977 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7Q38 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1292118552. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97241 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57738 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.920 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4XXJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.0 M AMMONIUM SULFATE,0.1 M SODIUM REMARK 280 ACETATE, PH 4.6, LIPIDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 57.82850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.62250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 57.82850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.62250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 57.82850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.62250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 57.82850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.62250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C10 LFA A 302 LIES ON A SPECIAL POSITION. REMARK 375 O1 SO4 A 320 LIES ON A SPECIAL POSITION. REMARK 375 AR AR A 335 LIES ON A SPECIAL POSITION. REMARK 375 AR AR A 362 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 477 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 512 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLN A 1 REMARK 465 ALA A 2 REMARK 465 GLN A 3 REMARK 465 GLU A 232 REMARK 465 ALA A 233 REMARK 465 GLU A 234 REMARK 465 ALA A 235 REMARK 465 PRO A 236 REMARK 465 GLU A 237 REMARK 465 PRO A 238 REMARK 465 SER A 239 REMARK 465 ALA A 240 REMARK 465 GLY A 241 REMARK 465 ASP A 242 REMARK 465 GLY A 243 REMARK 465 ALA A 244 REMARK 465 ALA A 245 REMARK 465 ALA A 246 REMARK 465 THR A 247 REMARK 465 SER A 248 REMARK 465 ASP A 249 REMARK 465 GLY A 250 REMARK 465 SER A 251 REMARK 465 GLY A 252 REMARK 465 ILE A 253 REMARK 465 GLU A 254 REMARK 465 GLY A 255 REMARK 465 ARG A 256 REMARK 465 SER A 257 REMARK 465 GLY A 258 REMARK 465 ALA A 259 REMARK 465 PRO A 260 REMARK 465 HIS A 261 REMARK 465 HIS A 262 REMARK 465 HIS A 263 REMARK 465 HIS A 264 REMARK 465 HIS A 265 REMARK 465 HIS A 266 REMARK 465 HIS A 267 REMARK 465 HIS A 268 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 30 NZ REMARK 470 LYS A 41 NZ REMARK 470 GLU A 74 CB CG CD OE1 OE2 REMARK 470 LYS A 129 NZ REMARK 470 ARG A 164 CD NE CZ NH1 NH2 REMARK 470 GLU A 166 CG CD OE1 OE2 REMARK 470 ARG A 227 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 440 O HOH A 472 1.40 REMARK 500 O HOH A 468 O HOH A 499 1.69 REMARK 500 O HOH A 499 O HOH A 511 1.81 REMARK 500 O HOH A 503 O HOH A 505 2.04 REMARK 500 O HOH A 417 O HOH A 469 2.05 REMARK 500 AR AR A 336 O HOH A 429 2.11 REMARK 500 CE LYS A 216 C15 RET A 301 2.15 REMARK 500 CE2 TYR A 147 AR AR A 359 2.15 REMARK 500 O HOH A 416 O HOH A 469 2.18 REMARK 500 O HOH A 415 O HOH A 466 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLY A 73 O GLY A 73 4556 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 109 CB - CA - C ANGL. DEV. = 12.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 517 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 518 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A 519 DISTANCE = 6.39 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LFA A 302 REMARK 610 LFA A 303 REMARK 610 LFA A 305 REMARK 610 LFA A 306 REMARK 610 LFA A 307 REMARK 610 LFA A 308 REMARK 610 LFA A 309 REMARK 610 LFA A 310 REMARK 610 LFA A 311 REMARK 610 OLC A 312 REMARK 610 OLA A 314 REMARK 610 OLA A 315 REMARK 610 HEX A 318 DBREF 7Q38 A 1 249 UNP P02945 BACR_HALSA 14 262 SEQADV 7Q38 MET A 0 UNP P02945 INITIATING METHIONINE SEQADV 7Q38 ALA A 17 UNP P02945 THR 30 ENGINEERED MUTATION SEQADV 7Q38 ALA A 24 UNP P02945 THR 37 ENGINEERED MUTATION SEQADV 7Q38 ALA A 47 UNP P02945 THR 60 ENGINEERED MUTATION SEQADV 7Q38 GLY A 250 UNP P02945 EXPRESSION TAG SEQADV 7Q38 SER A 251 UNP P02945 EXPRESSION TAG SEQADV 7Q38 GLY A 252 UNP P02945 EXPRESSION TAG SEQADV 7Q38 ILE A 253 UNP P02945 EXPRESSION TAG SEQADV 7Q38 GLU A 254 UNP P02945 EXPRESSION TAG SEQADV 7Q38 GLY A 255 UNP P02945 EXPRESSION TAG SEQADV 7Q38 ARG A 256 UNP P02945 EXPRESSION TAG SEQADV 7Q38 SER A 257 UNP P02945 EXPRESSION TAG SEQADV 7Q38 GLY A 258 UNP P02945 EXPRESSION TAG SEQADV 7Q38 ALA A 259 UNP P02945 EXPRESSION TAG SEQADV 7Q38 PRO A 260 UNP P02945 EXPRESSION TAG SEQADV 7Q38 HIS A 261 UNP P02945 EXPRESSION TAG SEQADV 7Q38 HIS A 262 UNP P02945 EXPRESSION TAG SEQADV 7Q38 HIS A 263 UNP P02945 EXPRESSION TAG SEQADV 7Q38 HIS A 264 UNP P02945 EXPRESSION TAG SEQADV 7Q38 HIS A 265 UNP P02945 EXPRESSION TAG SEQADV 7Q38 HIS A 266 UNP P02945 EXPRESSION TAG SEQADV 7Q38 HIS A 267 UNP P02945 EXPRESSION TAG SEQADV 7Q38 HIS A 268 UNP P02945 EXPRESSION TAG SEQRES 1 A 269 MET GLN ALA GLN ILE THR GLY ARG PRO GLU TRP ILE TRP SEQRES 2 A 269 LEU ALA LEU GLY ALA ALA LEU MET GLY LEU GLY ALA LEU SEQRES 3 A 269 TYR PHE LEU VAL LYS GLY MET GLY VAL SER ASP PRO ASP SEQRES 4 A 269 ALA LYS LYS PHE TYR ALA ILE THR ALA LEU VAL PRO ALA SEQRES 5 A 269 ILE ALA PHE THR MET TYR LEU SER MET LEU LEU GLY TYR SEQRES 6 A 269 GLY LEU THR MET VAL PRO PHE GLY GLY GLU GLN ASN PRO SEQRES 7 A 269 ILE TYR TRP ALA ARG TYR ALA ASP TRP LEU PHE THR THR SEQRES 8 A 269 PRO LEU LEU LEU LEU ASP LEU ALA LEU LEU VAL ASP ALA SEQRES 9 A 269 ASP GLN GLY THR ILE LEU ALA LEU VAL GLY ALA ASP GLY SEQRES 10 A 269 ILE MET ILE GLY THR GLY LEU VAL GLY ALA LEU THR LYS SEQRES 11 A 269 VAL TYR SER TYR ARG PHE VAL TRP TRP ALA ILE SER THR SEQRES 12 A 269 ALA ALA MET LEU TYR ILE LEU TYR VAL LEU PHE PHE GLY SEQRES 13 A 269 PHE THR SER LYS ALA GLU SER MET ARG PRO GLU VAL ALA SEQRES 14 A 269 SER THR PHE LYS VAL LEU ARG ASN VAL THR VAL VAL LEU SEQRES 15 A 269 TRP SER ALA TYR PRO VAL VAL TRP LEU ILE GLY SER GLU SEQRES 16 A 269 GLY ALA GLY ILE VAL PRO LEU ASN ILE GLU THR LEU LEU SEQRES 17 A 269 PHE MET VAL LEU ASP VAL SER ALA LYS VAL GLY PHE GLY SEQRES 18 A 269 LEU ILE LEU LEU ARG SER ARG ALA ILE PHE GLY GLU ALA SEQRES 19 A 269 GLU ALA PRO GLU PRO SER ALA GLY ASP GLY ALA ALA ALA SEQRES 20 A 269 THR SER ASP GLY SER GLY ILE GLU GLY ARG SER GLY ALA SEQRES 21 A 269 PRO HIS HIS HIS HIS HIS HIS HIS HIS HET RET A 301 20 HET LFA A 302 18 HET LFA A 303 13 HET LFA A 304 20 HET LFA A 305 18 HET LFA A 306 7 HET LFA A 307 6 HET LFA A 308 10 HET LFA A 309 11 HET LFA A 310 9 HET LFA A 311 11 HET OLC A 312 20 HET OLA A 313 20 HET OLA A 314 19 HET OLA A 315 15 HET HEX A 316 6 HET HEX A 317 6 HET HEX A 318 4 HET HEX A 319 6 HET SO4 A 320 5 HET SO4 A 321 5 HET AR A 322 1 HET AR A 323 1 HET AR A 324 1 HET AR A 325 1 HET AR A 326 1 HET AR A 327 1 HET AR A 328 1 HET AR A 329 1 HET AR A 330 1 HET AR A 331 1 HET AR A 332 1 HET AR A 333 1 HET AR A 334 1 HET AR A 335 1 HET AR A 336 1 HET AR A 337 1 HET AR A 338 1 HET AR A 339 1 HET AR A 340 1 HET AR A 341 1 HET AR A 342 1 HET AR A 343 1 HET AR A 344 1 HET AR A 345 1 HET AR A 346 1 HET AR A 347 1 HET AR A 348 1 HET AR A 349 1 HET AR A 350 1 HET AR A 351 1 HET AR A 352 1 HET AR A 353 1 HET AR A 354 1 HET AR A 355 1 HET AR A 356 1 HET AR A 357 1 HET AR A 358 1 HET AR A 359 1 HET AR A 360 1 HET AR A 361 1 HET AR A 362 1 HET AR A 363 1 HET AR A 364 1 HET AR A 365 1 HET AR A 366 1 HET AR A 367 1 HET AR A 368 1 HETNAM RET RETINAL HETNAM LFA EICOSANE HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM OLA OLEIC ACID HETNAM HEX HEXANE HETNAM SO4 SULFATE ION HETNAM AR ARGON HETSYN LFA LIPID FRAGMENT HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 2 RET C20 H28 O FORMUL 3 LFA 10(C20 H42) FORMUL 13 OLC C21 H40 O4 FORMUL 14 OLA 3(C18 H34 O2) FORMUL 17 HEX 4(C6 H14) FORMUL 21 SO4 2(O4 S 2-) FORMUL 23 AR 47(AR) FORMUL 70 HOH *119(H2 O) HELIX 1 AA1 GLU A 9 GLY A 33 1 25 HELIX 2 AA2 ASP A 36 LEU A 62 1 27 HELIX 3 AA3 TRP A 80 VAL A 101 1 22 HELIX 4 AA4 ASP A 104 LEU A 127 1 24 HELIX 5 AA5 VAL A 130 PHE A 154 1 25 HELIX 6 AA6 PHE A 154 SER A 162 1 9 HELIX 7 AA7 ARG A 164 GLY A 192 1 29 HELIX 8 AA8 PRO A 200 ARG A 225 1 26 HELIX 9 AA9 SER A 226 PHE A 230 5 5 SHEET 1 AA1 2 LEU A 66 PHE A 71 0 SHEET 2 AA1 2 GLU A 74 TYR A 79 -1 O ILE A 78 N THR A 67 LINK NZ LYS A 216 C15 RET A 301 1555 1555 1.30 CRYST1 115.657 119.245 36.393 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008646 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008386 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027478 0.00000