HEADER OXIDOREDUCTASE 04-NOV-21 7Q5X TITLE HIF PROLYL HYDROXYLASE 2 (PHD2/EGLN1) IN COMPLEX WITH 2-OXOGLUTARATE TITLE 2 (2OG) AND HIF-2 ALPHA CODD (523-542) COMPND MOL_ID: 1; COMPND 2 MOLECULE: EGL NINE HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HYPOXIA-INDUCIBLE FACTOR PROLYL HYDROXYLASE 2,HPH-2,PROLYL COMPND 5 HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2,PHD2,SM-20; COMPND 6 EC: 1.14.11.29; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ENDOTHELIAL PAS DOMAIN-CONTAINING PROTEIN 1; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: EPAS-1,BASIC-HELIX-LOOP-HELIX-PAS PROTEIN MOP2,CLASS E BASIC COMPND 12 HELIX-LOOP-HELIX PROTEIN 73,BHLHE73,HIF-1-ALPHA-LIKE FACTOR,HLF, COMPND 13 HYPOXIA-INDUCIBLE FACTOR 2-ALPHA,HIF-2-ALPHA,HIF2-ALPHA,MEMBER OF PAS COMPND 14 PROTEIN 2,PAS DOMAIN-CONTAINING PROTEIN 2; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGLN1, C1ORF12, PNAS-118, PNAS-137; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS PHD2, HIF-2ALPHA, COMPLEX, 2OG, OXIDOREDUCTASE, HYPOXIA EXPDTA X-RAY DIFFRACTION AUTHOR W.D.FIGG JR,M.A.MCDONOUGH,R.CHOWDHURY,Y.NAKASHIMA,C.J.SCHOFIELD REVDAT 4 31-JAN-24 7Q5X 1 REMARK REVDAT 3 18-OCT-23 7Q5X 1 JRNL REVDAT 2 26-JUL-23 7Q5X 1 JRNL REVDAT 1 16-NOV-22 7Q5X 0 JRNL AUTH W.D.FIGG JR.,G.FIORINI,R.CHOWDHURY,Y.NAKASHIMA,A.TUMBER, JRNL AUTH 2 M.A.MCDONOUGH,C.J.SCHOFIELD JRNL TITL STRUCTURAL BASIS FOR BINDING OF THE RENAL CARCINOMA TARGET JRNL TITL 2 HYPOXIA-INDUCIBLE FACTOR 2 ALPHA TO PROLYL HYDROXYLASE JRNL TITL 3 DOMAIN 2. JRNL REF PROTEINS V. 91 1510 2023 JRNL REFN ESSN 1097-0134 JRNL PMID 37449559 JRNL DOI 10.1002/PROT.26541 REMARK 2 REMARK 2 RESOLUTION. 1.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 66197 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3329 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.7500 - 3.4900 1.00 2853 148 0.1577 0.1686 REMARK 3 2 3.4900 - 2.7700 1.00 2722 142 0.1320 0.1432 REMARK 3 3 2.7700 - 2.4200 1.00 2695 114 0.1328 0.1616 REMARK 3 4 2.4200 - 2.2000 1.00 2634 161 0.1307 0.1581 REMARK 3 5 2.2000 - 2.0400 1.00 2632 140 0.1265 0.1616 REMARK 3 6 2.0400 - 1.9200 1.00 2651 138 0.1403 0.1703 REMARK 3 7 1.9200 - 1.8200 1.00 2632 130 0.1407 0.1554 REMARK 3 8 1.8200 - 1.7400 1.00 2613 135 0.1420 0.1489 REMARK 3 9 1.7400 - 1.6800 1.00 2634 133 0.1498 0.1804 REMARK 3 10 1.6800 - 1.6200 1.00 2590 145 0.1586 0.1699 REMARK 3 11 1.6200 - 1.5700 1.00 2621 146 0.1589 0.1936 REMARK 3 12 1.5700 - 1.5200 1.00 2574 129 0.1796 0.1920 REMARK 3 13 1.5200 - 1.4800 1.00 2616 139 0.1969 0.2159 REMARK 3 14 1.4800 - 1.4500 1.00 2622 133 0.1888 0.2021 REMARK 3 15 1.4500 - 1.4100 1.00 2556 137 0.1916 0.2323 REMARK 3 16 1.4100 - 1.3800 1.00 2573 171 0.1989 0.2174 REMARK 3 17 1.3800 - 1.3600 1.00 2589 124 0.2084 0.2157 REMARK 3 18 1.3600 - 1.3300 1.00 2569 157 0.2202 0.2400 REMARK 3 19 1.3300 - 1.3100 1.00 2579 134 0.2272 0.2244 REMARK 3 20 1.3100 - 1.2900 1.00 2615 126 0.2492 0.2567 REMARK 3 21 1.2900 - 1.2600 1.00 2586 136 0.2569 0.2686 REMARK 3 22 1.2600 - 1.2500 1.00 2591 125 0.2857 0.3001 REMARK 3 23 1.2500 - 1.2300 1.00 2559 143 0.3032 0.3099 REMARK 3 24 1.2300 - 1.2100 0.99 2562 143 0.3180 0.3167 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 187 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3858 24.8324 12.2461 REMARK 3 T TENSOR REMARK 3 T11: 0.1793 T22: 0.0999 REMARK 3 T33: 0.1850 T12: 0.0127 REMARK 3 T13: -0.0081 T23: -0.0328 REMARK 3 L TENSOR REMARK 3 L11: 1.8980 L22: 1.9224 REMARK 3 L33: 1.0319 L12: -0.7741 REMARK 3 L13: 0.8576 L23: -0.9129 REMARK 3 S TENSOR REMARK 3 S11: -0.1169 S12: -0.1615 S13: 0.2700 REMARK 3 S21: 0.1281 S22: 0.0672 S23: -0.0433 REMARK 3 S31: -0.1326 S32: -0.1572 S33: 0.0435 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 216 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2567 6.4792 27.3292 REMARK 3 T TENSOR REMARK 3 T11: 0.3191 T22: 0.1940 REMARK 3 T33: 0.1199 T12: 0.0150 REMARK 3 T13: -0.0376 T23: 0.0179 REMARK 3 L TENSOR REMARK 3 L11: 1.4993 L22: 3.6843 REMARK 3 L33: 3.5018 L12: -1.2938 REMARK 3 L13: -1.6140 L23: 3.5243 REMARK 3 S TENSOR REMARK 3 S11: 0.0199 S12: -0.4058 S13: -0.0694 REMARK 3 S21: 0.6071 S22: 0.0937 S23: -0.3530 REMARK 3 S31: -0.0059 S32: -0.0035 S33: -0.1250 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9528 3.3600 12.9600 REMARK 3 T TENSOR REMARK 3 T11: 0.1251 T22: 0.0764 REMARK 3 T33: 0.1243 T12: -0.0051 REMARK 3 T13: -0.0087 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 1.7318 L22: 2.0326 REMARK 3 L33: 1.2517 L12: -0.8048 REMARK 3 L13: -0.2713 L23: 0.4916 REMARK 3 S TENSOR REMARK 3 S11: -0.0537 S12: -0.1223 S13: -0.1326 REMARK 3 S21: 0.1412 S22: 0.0439 S23: 0.0111 REMARK 3 S31: 0.1711 S32: -0.0211 S33: 0.0113 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 284 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2672 10.9924 8.1272 REMARK 3 T TENSOR REMARK 3 T11: 0.1203 T22: 0.0641 REMARK 3 T33: 0.0899 T12: 0.0095 REMARK 3 T13: 0.0104 T23: -0.0242 REMARK 3 L TENSOR REMARK 3 L11: 3.2598 L22: 2.9656 REMARK 3 L33: 2.3160 L12: -0.6359 REMARK 3 L13: 1.2233 L23: -1.0989 REMARK 3 S TENSOR REMARK 3 S11: -0.0168 S12: 0.0850 S13: 0.0455 REMARK 3 S21: -0.0522 S22: 0.0515 S23: 0.1737 REMARK 3 S31: -0.0678 S32: -0.0683 S33: -0.0853 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 305 THROUGH 342 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0855 9.4452 10.4149 REMARK 3 T TENSOR REMARK 3 T11: 0.1194 T22: 0.0422 REMARK 3 T33: 0.1252 T12: -0.0059 REMARK 3 T13: -0.0149 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 2.3836 L22: 1.0586 REMARK 3 L33: 1.8976 L12: -0.0709 REMARK 3 L13: 0.7122 L23: -0.0213 REMARK 3 S TENSOR REMARK 3 S11: -0.0051 S12: -0.0579 S13: -0.0509 REMARK 3 S21: 0.0456 S22: -0.0082 S23: -0.1264 REMARK 3 S31: -0.0140 S32: 0.0678 S33: 0.0073 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 343 THROUGH 353 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.1967 19.6821 1.3191 REMARK 3 T TENSOR REMARK 3 T11: 0.1641 T22: 0.0900 REMARK 3 T33: 0.2032 T12: -0.0198 REMARK 3 T13: 0.0061 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 3.3981 L22: 3.2361 REMARK 3 L33: 8.7397 L12: 0.3278 REMARK 3 L13: -1.6149 L23: -5.1728 REMARK 3 S TENSOR REMARK 3 S11: -0.0010 S12: 0.2761 S13: 0.5664 REMARK 3 S21: -0.2152 S22: -0.0048 S23: -0.2069 REMARK 3 S31: -0.2085 S32: 0.0916 S33: 0.0080 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 354 THROUGH 381 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2773 13.9375 9.1011 REMARK 3 T TENSOR REMARK 3 T11: 0.1322 T22: 0.0691 REMARK 3 T33: 0.1344 T12: -0.0054 REMARK 3 T13: -0.0112 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 1.1575 L22: 1.2965 REMARK 3 L33: 1.8228 L12: -0.0845 REMARK 3 L13: 0.0651 L23: -0.0941 REMARK 3 S TENSOR REMARK 3 S11: 0.0091 S12: -0.0262 S13: 0.0739 REMARK 3 S21: 0.0182 S22: 0.0123 S23: -0.1635 REMARK 3 S31: -0.0494 S32: 0.0791 S33: -0.0191 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 382 THROUGH 407 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3311 5.2821 3.0208 REMARK 3 T TENSOR REMARK 3 T11: 0.1294 T22: 0.0794 REMARK 3 T33: 0.1237 T12: -0.0139 REMARK 3 T13: 0.0040 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 4.4165 L22: 1.1956 REMARK 3 L33: 4.1235 L12: 0.9948 REMARK 3 L13: 3.3346 L23: 0.7010 REMARK 3 S TENSOR REMARK 3 S11: -0.0728 S12: 0.2116 S13: -0.0410 REMARK 3 S21: -0.0884 S22: 0.0399 S23: 0.0624 REMARK 3 S31: 0.1080 S32: -0.0290 S33: 0.0123 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 524 THROUGH 528 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1164 1.4158 -5.8872 REMARK 3 T TENSOR REMARK 3 T11: 0.2918 T22: 0.2117 REMARK 3 T33: 0.2187 T12: 0.0190 REMARK 3 T13: 0.0397 T23: -0.0343 REMARK 3 L TENSOR REMARK 3 L11: 3.6877 L22: 5.4109 REMARK 3 L33: 5.4022 L12: 2.6407 REMARK 3 L13: -3.2629 L23: -5.2047 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: 1.0612 S13: -0.2610 REMARK 3 S21: -1.2402 S22: 0.1027 S23: -0.5611 REMARK 3 S31: 0.8503 S32: 0.0171 S33: -0.1007 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 529 THROUGH 542 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4797 2.2532 5.7695 REMARK 3 T TENSOR REMARK 3 T11: 0.1734 T22: 0.1516 REMARK 3 T33: 0.2949 T12: -0.0207 REMARK 3 T13: 0.0298 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 5.1747 L22: 0.6213 REMARK 3 L33: 1.6328 L12: -1.5757 REMARK 3 L13: -2.7057 L23: 0.6580 REMARK 3 S TENSOR REMARK 3 S11: -0.3072 S12: 0.3417 S13: -0.8766 REMARK 3 S21: -0.0095 S22: -0.0516 S23: 0.4104 REMARK 3 S31: 0.2245 S32: -0.3194 S33: 0.2622 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7Q5X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1292118952. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97962 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 0.5.898 REMARK 200 DATA SCALING SOFTWARE : DIALS 1.14.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66301 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.210 REMARK 200 RESOLUTION RANGE LOW (A) : 43.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.13170 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 10.40 REMARK 200 R MERGE FOR SHELL (I) : 4.20400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 3HQR REMARK 200 REMARK 200 REMARK: ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SAMPLE: 1.0 MM PHD2, 1.2 MM MNCL2, 2.0 REMARK 280 MM 2OG, 2 MM 3C, 2-4 MM HIF-2ALPHA-CODD; RESERVOIR: 0.33 M REMARK 280 MAGNESIUM FORMATE (RANGE: 0.25-0.39 M), 17.5% W/V POLYETHYLENE REMARK 280 GLYCOL 3350 (RANGE: 18-22%); SITTING DROP (200 NL): PROTEIN-TO- REMARK 280 WELL RATIO, 1:1; CRYO-PROTECTANT: 15% V/V DILUTION OF RESERVIOR REMARK 280 SOLUTION WITH GLYCEROL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 65.22700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.08750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 65.22700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 19.08750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 175 REMARK 465 SER A 176 REMARK 465 HIS A 177 REMARK 465 MET A 178 REMARK 465 ALA A 179 REMARK 465 SER A 180 REMARK 465 PRO A 181 REMARK 465 ASN A 182 REMARK 465 GLY A 183 REMARK 465 GLN A 184 REMARK 465 THR A 185 REMARK 465 LYS A 186 REMARK 465 GLU B 523 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 LYS A 216 CE NZ REMARK 470 GLU A 217 CG CD OE1 OE2 REMARK 470 GLN A 221 CD OE1 NE2 REMARK 470 LYS A 244 NZ REMARK 470 LYS A 249 NZ REMARK 470 LYS A 262 CG CD CE NZ REMARK 470 LYS A 291 NZ REMARK 470 LYS A 332 NZ REMARK 470 LYS A 359 CD CE NZ REMARK 470 LYS A 402 NZ REMARK 470 GLU A 407 CD OE1 OE2 REMARK 470 LEU B 524 CD1 CD2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 216 CD REMARK 480 LYS A 332 CD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG A 281 O HOH A 602 1.58 REMARK 500 OD2 ASP A 278 O HOH A 601 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 283 CB CYS A 283 SG -0.115 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 197 -60.69 -130.46 REMARK 500 LYS A 244 -140.36 -121.03 REMARK 500 LYS A 244 -140.61 -121.03 REMARK 500 PRO A 304 49.18 -83.95 REMARK 500 LEU A 330 38.37 -140.84 REMARK 500 PHE A 346 74.20 -117.18 REMARK 500 ASP A 369 -168.97 -78.27 REMARK 500 GLU B 538 111.32 69.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 322 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 313 NE2 REMARK 620 2 ASP A 315 OD1 92.5 REMARK 620 3 HIS A 374 NE2 85.1 89.6 REMARK 620 4 AKG A 502 O1 95.2 96.9 173.5 REMARK 620 5 AKG A 502 O5 92.9 174.6 91.0 82.6 REMARK 620 6 HOH A 630 O 176.1 89.4 91.6 87.9 85.2 REMARK 620 N 1 2 3 4 5 DBREF 7Q5X A 181 407 UNP Q9GZT9 EGLN1_HUMAN 181 407 DBREF 7Q5X B 523 542 UNP Q99814 EPAS1_HUMAN 523 542 SEQADV 7Q5X GLY A 175 UNP Q9GZT9 EXPRESSION TAG SEQADV 7Q5X SER A 176 UNP Q9GZT9 EXPRESSION TAG SEQADV 7Q5X HIS A 177 UNP Q9GZT9 EXPRESSION TAG SEQADV 7Q5X MET A 178 UNP Q9GZT9 EXPRESSION TAG SEQADV 7Q5X ALA A 179 UNP Q9GZT9 EXPRESSION TAG SEQADV 7Q5X SER A 180 UNP Q9GZT9 EXPRESSION TAG SEQRES 1 A 233 GLY SER HIS MET ALA SER PRO ASN GLY GLN THR LYS PRO SEQRES 2 A 233 LEU PRO ALA LEU LYS LEU ALA LEU GLU TYR ILE VAL PRO SEQRES 3 A 233 CYS MET ASN LYS HIS GLY ILE CYS VAL VAL ASP ASP PHE SEQRES 4 A 233 LEU GLY LYS GLU THR GLY GLN GLN ILE GLY ASP GLU VAL SEQRES 5 A 233 ARG ALA LEU HIS ASP THR GLY LYS PHE THR ASP GLY GLN SEQRES 6 A 233 LEU VAL SER GLN LYS SER ASP SER SER LYS ASP ILE ARG SEQRES 7 A 233 GLY ASP LYS ILE THR TRP ILE GLU GLY LYS GLU PRO GLY SEQRES 8 A 233 CYS GLU THR ILE GLY LEU LEU MET SER SER MET ASP ASP SEQRES 9 A 233 LEU ILE ARG HIS CYS ASN GLY LYS LEU GLY SER TYR LYS SEQRES 10 A 233 ILE ASN GLY ARG THR LYS ALA MET VAL ALA CYS TYR PRO SEQRES 11 A 233 GLY ASN GLY THR GLY TYR VAL ARG HIS VAL ASP ASN PRO SEQRES 12 A 233 ASN GLY ASP GLY ARG CYS VAL THR CYS ILE TYR TYR LEU SEQRES 13 A 233 ASN LYS ASP TRP ASP ALA LYS VAL SER GLY GLY ILE LEU SEQRES 14 A 233 ARG ILE PHE PRO GLU GLY LYS ALA GLN PHE ALA ASP ILE SEQRES 15 A 233 GLU PRO LYS PHE ASP ARG LEU LEU PHE PHE TRP SER ASP SEQRES 16 A 233 ARG ARG ASN PRO HIS GLU VAL GLN PRO ALA TYR ALA THR SEQRES 17 A 233 ARG TYR ALA ILE THR VAL TRP TYR PHE ASP ALA ASP GLU SEQRES 18 A 233 ARG ALA ARG ALA LYS VAL LYS TYR LEU THR GLY GLU SEQRES 1 B 20 GLU LEU ASP LEU GLU THR LEU ALA PRO TYR ILE PRO MET SEQRES 2 B 20 ASP GLY GLU ASP PHE GLN LEU HET MN A 501 1 HET AKG A 502 14 HET PEG A 503 17 HET FMT A 504 8 HET GOL A 505 14 HET FMT A 506 4 HET FMT A 507 4 HET FMT A 508 4 HET FMT A 509 8 HET FMT A 510 4 HET FMT A 511 4 HET FMT A 512 4 HET FMT A 513 8 HET FMT A 514 4 HET MG A 515 1 HET MG A 516 1 HET MG A 517 1 HET CL A 518 1 HET CL A 519 1 HET CL A 520 1 HET FMT B 601 4 HETNAM MN MANGANESE (II) ION HETNAM AKG 2-OXOGLUTARIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM FMT FORMIC ACID HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MN MN 2+ FORMUL 4 AKG C5 H6 O5 FORMUL 5 PEG C4 H10 O3 FORMUL 6 FMT 11(C H2 O2) FORMUL 7 GOL C3 H8 O3 FORMUL 17 MG 3(MG 2+) FORMUL 20 CL 3(CL 1-) FORMUL 24 HOH *147(H2 O) HELIX 1 AA1 PRO A 189 TYR A 197 1 9 HELIX 2 AA2 TYR A 197 GLY A 206 1 10 HELIX 3 AA3 GLY A 215 THR A 232 1 18 HELIX 4 AA4 SER A 247 ILE A 251 5 5 HELIX 5 AA5 CYS A 266 ASN A 284 1 19 HELIX 6 AA6 ASP A 335 GLY A 340 1 6 HELIX 7 AA7 ALA A 393 THR A 405 1 13 HELIX 8 AA8 ASP B 525 LEU B 529 5 5 SHEET 1 AA1 7 ILE A 207 VAL A 210 0 SHEET 2 AA1 7 LEU A 363 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 3 AA1 7 ARG A 322 TYR A 329 -1 N THR A 325 O PHE A 366 SHEET 4 AA1 7 THR A 382 ASP A 392 -1 O TYR A 390 N CYS A 323 SHEET 5 AA1 7 ALA A 298 PRO A 304 -1 N MET A 299 O THR A 387 SHEET 6 AA1 7 LYS A 255 ILE A 259 -1 N THR A 257 O VAL A 300 SHEET 7 AA1 7 THR A 236 ASP A 237 -1 N THR A 236 O ILE A 256 SHEET 1 AA2 6 ILE A 207 VAL A 210 0 SHEET 2 AA2 6 LEU A 363 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 3 AA2 6 ARG A 322 TYR A 329 -1 N THR A 325 O PHE A 366 SHEET 4 AA2 6 THR A 382 ASP A 392 -1 O TYR A 390 N CYS A 323 SHEET 5 AA2 6 ILE A 292 ARG A 295 -1 N GLY A 294 O PHE A 391 SHEET 6 AA2 6 PHE B 540 GLN B 541 -1 O PHE B 540 N ARG A 295 SHEET 1 AA3 4 THR A 308 HIS A 313 0 SHEET 2 AA3 4 HIS A 374 ALA A 379 -1 O HIS A 374 N HIS A 313 SHEET 3 AA3 4 LEU A 343 ILE A 345 -1 N ARG A 344 O GLU A 375 SHEET 4 AA3 4 ALA A 354 ILE A 356 -1 O ILE A 356 N LEU A 343 SSBOND 1 CYS A 201 CYS A 208 1555 1555 2.03 LINK NE2 HIS A 313 MN MN A 501 1555 1555 2.16 LINK OD1 ASP A 315 MN MN A 501 1555 1555 2.15 LINK NE2 HIS A 374 MN MN A 501 1555 1555 2.14 LINK MN MN A 501 O1 AKG A 502 1555 1555 2.11 LINK MN MN A 501 O5 AKG A 502 1555 1555 2.15 LINK MN MN A 501 O HOH A 630 1555 1555 2.19 LINK O2 BFMT A 513 MG MG A 515 1555 1555 2.88 CRYST1 130.454 38.175 42.751 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007666 0.000000 0.000000 0.00000 SCALE2 0.000000 0.026195 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023391 0.00000