data_7Q67 # _entry.id 7Q67 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.395 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7Q67 pdb_00007q67 10.2210/pdb7q67/pdb WWPDB D_1292119063 ? ? EMDB EMD-13854 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-10-12 2 'Structure model' 1 1 2022-11-16 3 'Structure model' 1 2 2024-07-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 3 'Structure model' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7Q67 _pdbx_database_status.recvd_initial_deposition_date 2021-11-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-em structure of the Nup98 fibril polymorph 4' _pdbx_database_related.db_id EMD-13854 _pdbx_database_related.content_type 'associated EM volume' # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 4 gu.schroeder@fz-juelich.de Gunnar Schroeder F. 'principal investigator/group leader' 0000-0003-1803-5431 5 markus.zweckstetter@dzne.de Markus Zweckstetter ? 'principal investigator/group leader' 0000-0002-2536-6581 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ibanez de Opakua, A.' 1 0000-0003-1700-9354 'Geraets, J.A.' 2 0000-0003-3378-0683 'Frieg, B.' 3 0000-0002-7877-0262 'Dienemann, C.' 4 ? 'Savastano, A.' 5 ? 'Rankovic, M.' 6 ? 'Cima-Omori, M.-S.' 7 ? 'Schroeder, G.F.' 8 0000-0003-1803-5431 'Zweckstetter, M.' 9 0000-0002-2536-6581 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nat.Chem. _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1755-4349 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 14 _citation.language ? _citation.page_first 1278 _citation.page_last 1285 _citation.title 'Molecular interactions of FG nucleoporin repeats at high resolution.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41557-022-01035-7 _citation.pdbx_database_id_PubMed 36138110 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ibanez de Opakua, A.' 1 ? primary 'Geraets, J.A.' 2 ? primary 'Frieg, B.' 3 ? primary 'Dienemann, C.' 4 ? primary 'Savastano, A.' 5 ? primary 'Rankovic, M.' 6 ? primary 'Cima-Omori, M.S.' 7 ? primary 'Schroder, G.F.' 8 ? primary 'Zweckstetter, M.' 9 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Nuclear pore complex protein Nup98' _entity.formula_weight 4005.211 _entity.pdbx_number_of_molecules 11 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name '98 kDa nucleoporin,Nucleoporin Nup98,Nup98' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code TGTANTLFGTASTGTSLFSSQNNAFAQNKPTGFGNFGTST _entity_poly.pdbx_seq_one_letter_code_can TGTANTLFGTASTGTSLFSSQNNAFAQNKPTGFGNFGTST _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H,I,J,K _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 GLY n 1 3 THR n 1 4 ALA n 1 5 ASN n 1 6 THR n 1 7 LEU n 1 8 PHE n 1 9 GLY n 1 10 THR n 1 11 ALA n 1 12 SER n 1 13 THR n 1 14 GLY n 1 15 THR n 1 16 SER n 1 17 LEU n 1 18 PHE n 1 19 SER n 1 20 SER n 1 21 GLN n 1 22 ASN n 1 23 ASN n 1 24 ALA n 1 25 PHE n 1 26 ALA n 1 27 GLN n 1 28 ASN n 1 29 LYS n 1 30 PRO n 1 31 THR n 1 32 GLY n 1 33 PHE n 1 34 GLY n 1 35 ASN n 1 36 PHE n 1 37 GLY n 1 38 THR n 1 39 SER n 1 40 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 40 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NUP98, ADAR2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 82 ? ? ? A . n A 1 2 GLY 2 83 ? ? ? A . n A 1 3 THR 3 84 ? ? ? A . n A 1 4 ALA 4 85 ? ? ? A . n A 1 5 ASN 5 86 ? ? ? A . n A 1 6 THR 6 87 87 THR THR A . n A 1 7 LEU 7 88 88 LEU LEU A . n A 1 8 PHE 8 89 89 PHE PHE A . n A 1 9 GLY 9 90 90 GLY GLY A . n A 1 10 THR 10 91 91 THR THR A . n A 1 11 ALA 11 92 92 ALA ALA A . n A 1 12 SER 12 93 93 SER SER A . n A 1 13 THR 13 94 94 THR THR A . n A 1 14 GLY 14 95 95 GLY GLY A . n A 1 15 THR 15 96 96 THR THR A . n A 1 16 SER 16 97 97 SER SER A . n A 1 17 LEU 17 98 98 LEU LEU A . n A 1 18 PHE 18 99 99 PHE PHE A . n A 1 19 SER 19 100 100 SER SER A . n A 1 20 SER 20 101 101 SER SER A . n A 1 21 GLN 21 102 102 GLN GLN A . n A 1 22 ASN 22 103 103 ASN ASN A . n A 1 23 ASN 23 104 104 ASN ASN A . n A 1 24 ALA 24 105 105 ALA ALA A . n A 1 25 PHE 25 106 106 PHE PHE A . n A 1 26 ALA 26 107 107 ALA ALA A . n A 1 27 GLN 27 108 108 GLN GLN A . n A 1 28 ASN 28 109 109 ASN ASN A . n A 1 29 LYS 29 110 110 LYS LYS A . n A 1 30 PRO 30 111 111 PRO PRO A . n A 1 31 THR 31 112 112 THR THR A . n A 1 32 GLY 32 113 113 GLY GLY A . n A 1 33 PHE 33 114 114 PHE PHE A . n A 1 34 GLY 34 115 115 GLY GLY A . n A 1 35 ASN 35 116 116 ASN ASN A . n A 1 36 PHE 36 117 117 PHE PHE A . n A 1 37 GLY 37 118 118 GLY GLY A . n A 1 38 THR 38 119 119 THR THR A . n A 1 39 SER 39 120 ? ? ? A . n A 1 40 THR 40 121 ? ? ? A . n B 1 1 THR 1 82 ? ? ? B . n B 1 2 GLY 2 83 ? ? ? B . n B 1 3 THR 3 84 ? ? ? B . n B 1 4 ALA 4 85 ? ? ? B . n B 1 5 ASN 5 86 ? ? ? B . n B 1 6 THR 6 87 87 THR THR B . n B 1 7 LEU 7 88 88 LEU LEU B . n B 1 8 PHE 8 89 89 PHE PHE B . n B 1 9 GLY 9 90 90 GLY GLY B . n B 1 10 THR 10 91 91 THR THR B . n B 1 11 ALA 11 92 92 ALA ALA B . n B 1 12 SER 12 93 93 SER SER B . n B 1 13 THR 13 94 94 THR THR B . n B 1 14 GLY 14 95 95 GLY GLY B . n B 1 15 THR 15 96 96 THR THR B . n B 1 16 SER 16 97 97 SER SER B . n B 1 17 LEU 17 98 98 LEU LEU B . n B 1 18 PHE 18 99 99 PHE PHE B . n B 1 19 SER 19 100 100 SER SER B . n B 1 20 SER 20 101 101 SER SER B . n B 1 21 GLN 21 102 102 GLN GLN B . n B 1 22 ASN 22 103 103 ASN ASN B . n B 1 23 ASN 23 104 104 ASN ASN B . n B 1 24 ALA 24 105 105 ALA ALA B . n B 1 25 PHE 25 106 106 PHE PHE B . n B 1 26 ALA 26 107 107 ALA ALA B . n B 1 27 GLN 27 108 108 GLN GLN B . n B 1 28 ASN 28 109 109 ASN ASN B . n B 1 29 LYS 29 110 110 LYS LYS B . n B 1 30 PRO 30 111 111 PRO PRO B . n B 1 31 THR 31 112 112 THR THR B . n B 1 32 GLY 32 113 113 GLY GLY B . n B 1 33 PHE 33 114 114 PHE PHE B . n B 1 34 GLY 34 115 115 GLY GLY B . n B 1 35 ASN 35 116 116 ASN ASN B . n B 1 36 PHE 36 117 117 PHE PHE B . n B 1 37 GLY 37 118 118 GLY GLY B . n B 1 38 THR 38 119 119 THR THR B . n B 1 39 SER 39 120 ? ? ? B . n B 1 40 THR 40 121 ? ? ? B . n C 1 1 THR 1 82 ? ? ? C . n C 1 2 GLY 2 83 ? ? ? C . n C 1 3 THR 3 84 ? ? ? C . n C 1 4 ALA 4 85 ? ? ? C . n C 1 5 ASN 5 86 ? ? ? C . n C 1 6 THR 6 87 87 THR THR C . n C 1 7 LEU 7 88 88 LEU LEU C . n C 1 8 PHE 8 89 89 PHE PHE C . n C 1 9 GLY 9 90 90 GLY GLY C . n C 1 10 THR 10 91 91 THR THR C . n C 1 11 ALA 11 92 92 ALA ALA C . n C 1 12 SER 12 93 93 SER SER C . n C 1 13 THR 13 94 94 THR THR C . n C 1 14 GLY 14 95 95 GLY GLY C . n C 1 15 THR 15 96 96 THR THR C . n C 1 16 SER 16 97 97 SER SER C . n C 1 17 LEU 17 98 98 LEU LEU C . n C 1 18 PHE 18 99 99 PHE PHE C . n C 1 19 SER 19 100 100 SER SER C . n C 1 20 SER 20 101 101 SER SER C . n C 1 21 GLN 21 102 102 GLN GLN C . n C 1 22 ASN 22 103 103 ASN ASN C . n C 1 23 ASN 23 104 104 ASN ASN C . n C 1 24 ALA 24 105 105 ALA ALA C . n C 1 25 PHE 25 106 106 PHE PHE C . n C 1 26 ALA 26 107 107 ALA ALA C . n C 1 27 GLN 27 108 108 GLN GLN C . n C 1 28 ASN 28 109 109 ASN ASN C . n C 1 29 LYS 29 110 110 LYS LYS C . n C 1 30 PRO 30 111 111 PRO PRO C . n C 1 31 THR 31 112 112 THR THR C . n C 1 32 GLY 32 113 113 GLY GLY C . n C 1 33 PHE 33 114 114 PHE PHE C . n C 1 34 GLY 34 115 115 GLY GLY C . n C 1 35 ASN 35 116 116 ASN ASN C . n C 1 36 PHE 36 117 117 PHE PHE C . n C 1 37 GLY 37 118 118 GLY GLY C . n C 1 38 THR 38 119 119 THR THR C . n C 1 39 SER 39 120 ? ? ? C . n C 1 40 THR 40 121 ? ? ? C . n D 1 1 THR 1 82 ? ? ? D . n D 1 2 GLY 2 83 ? ? ? D . n D 1 3 THR 3 84 ? ? ? D . n D 1 4 ALA 4 85 ? ? ? D . n D 1 5 ASN 5 86 ? ? ? D . n D 1 6 THR 6 87 87 THR THR D . n D 1 7 LEU 7 88 88 LEU LEU D . n D 1 8 PHE 8 89 89 PHE PHE D . n D 1 9 GLY 9 90 90 GLY GLY D . n D 1 10 THR 10 91 91 THR THR D . n D 1 11 ALA 11 92 92 ALA ALA D . n D 1 12 SER 12 93 93 SER SER D . n D 1 13 THR 13 94 94 THR THR D . n D 1 14 GLY 14 95 95 GLY GLY D . n D 1 15 THR 15 96 96 THR THR D . n D 1 16 SER 16 97 97 SER SER D . n D 1 17 LEU 17 98 98 LEU LEU D . n D 1 18 PHE 18 99 99 PHE PHE D . n D 1 19 SER 19 100 100 SER SER D . n D 1 20 SER 20 101 101 SER SER D . n D 1 21 GLN 21 102 102 GLN GLN D . n D 1 22 ASN 22 103 103 ASN ASN D . n D 1 23 ASN 23 104 104 ASN ASN D . n D 1 24 ALA 24 105 105 ALA ALA D . n D 1 25 PHE 25 106 106 PHE PHE D . n D 1 26 ALA 26 107 107 ALA ALA D . n D 1 27 GLN 27 108 108 GLN GLN D . n D 1 28 ASN 28 109 109 ASN ASN D . n D 1 29 LYS 29 110 110 LYS LYS D . n D 1 30 PRO 30 111 111 PRO PRO D . n D 1 31 THR 31 112 112 THR THR D . n D 1 32 GLY 32 113 113 GLY GLY D . n D 1 33 PHE 33 114 114 PHE PHE D . n D 1 34 GLY 34 115 115 GLY GLY D . n D 1 35 ASN 35 116 116 ASN ASN D . n D 1 36 PHE 36 117 117 PHE PHE D . n D 1 37 GLY 37 118 118 GLY GLY D . n D 1 38 THR 38 119 119 THR THR D . n D 1 39 SER 39 120 ? ? ? D . n D 1 40 THR 40 121 ? ? ? D . n E 1 1 THR 1 82 ? ? ? E . n E 1 2 GLY 2 83 ? ? ? E . n E 1 3 THR 3 84 ? ? ? E . n E 1 4 ALA 4 85 ? ? ? E . n E 1 5 ASN 5 86 ? ? ? E . n E 1 6 THR 6 87 87 THR THR E . n E 1 7 LEU 7 88 88 LEU LEU E . n E 1 8 PHE 8 89 89 PHE PHE E . n E 1 9 GLY 9 90 90 GLY GLY E . n E 1 10 THR 10 91 91 THR THR E . n E 1 11 ALA 11 92 92 ALA ALA E . n E 1 12 SER 12 93 93 SER SER E . n E 1 13 THR 13 94 94 THR THR E . n E 1 14 GLY 14 95 95 GLY GLY E . n E 1 15 THR 15 96 96 THR THR E . n E 1 16 SER 16 97 97 SER SER E . n E 1 17 LEU 17 98 98 LEU LEU E . n E 1 18 PHE 18 99 99 PHE PHE E . n E 1 19 SER 19 100 100 SER SER E . n E 1 20 SER 20 101 101 SER SER E . n E 1 21 GLN 21 102 102 GLN GLN E . n E 1 22 ASN 22 103 103 ASN ASN E . n E 1 23 ASN 23 104 104 ASN ASN E . n E 1 24 ALA 24 105 105 ALA ALA E . n E 1 25 PHE 25 106 106 PHE PHE E . n E 1 26 ALA 26 107 107 ALA ALA E . n E 1 27 GLN 27 108 108 GLN GLN E . n E 1 28 ASN 28 109 109 ASN ASN E . n E 1 29 LYS 29 110 110 LYS LYS E . n E 1 30 PRO 30 111 111 PRO PRO E . n E 1 31 THR 31 112 112 THR THR E . n E 1 32 GLY 32 113 113 GLY GLY E . n E 1 33 PHE 33 114 114 PHE PHE E . n E 1 34 GLY 34 115 115 GLY GLY E . n E 1 35 ASN 35 116 116 ASN ASN E . n E 1 36 PHE 36 117 117 PHE PHE E . n E 1 37 GLY 37 118 118 GLY GLY E . n E 1 38 THR 38 119 119 THR THR E . n E 1 39 SER 39 120 ? ? ? E . n E 1 40 THR 40 121 ? ? ? E . n F 1 1 THR 1 82 ? ? ? F . n F 1 2 GLY 2 83 ? ? ? F . n F 1 3 THR 3 84 ? ? ? F . n F 1 4 ALA 4 85 ? ? ? F . n F 1 5 ASN 5 86 ? ? ? F . n F 1 6 THR 6 87 87 THR THR F . n F 1 7 LEU 7 88 88 LEU LEU F . n F 1 8 PHE 8 89 89 PHE PHE F . n F 1 9 GLY 9 90 90 GLY GLY F . n F 1 10 THR 10 91 91 THR THR F . n F 1 11 ALA 11 92 92 ALA ALA F . n F 1 12 SER 12 93 93 SER SER F . n F 1 13 THR 13 94 94 THR THR F . n F 1 14 GLY 14 95 95 GLY GLY F . n F 1 15 THR 15 96 96 THR THR F . n F 1 16 SER 16 97 97 SER SER F . n F 1 17 LEU 17 98 98 LEU LEU F . n F 1 18 PHE 18 99 99 PHE PHE F . n F 1 19 SER 19 100 100 SER SER F . n F 1 20 SER 20 101 101 SER SER F . n F 1 21 GLN 21 102 102 GLN GLN F . n F 1 22 ASN 22 103 103 ASN ASN F . n F 1 23 ASN 23 104 104 ASN ASN F . n F 1 24 ALA 24 105 105 ALA ALA F . n F 1 25 PHE 25 106 106 PHE PHE F . n F 1 26 ALA 26 107 107 ALA ALA F . n F 1 27 GLN 27 108 108 GLN GLN F . n F 1 28 ASN 28 109 109 ASN ASN F . n F 1 29 LYS 29 110 110 LYS LYS F . n F 1 30 PRO 30 111 111 PRO PRO F . n F 1 31 THR 31 112 112 THR THR F . n F 1 32 GLY 32 113 113 GLY GLY F . n F 1 33 PHE 33 114 114 PHE PHE F . n F 1 34 GLY 34 115 115 GLY GLY F . n F 1 35 ASN 35 116 116 ASN ASN F . n F 1 36 PHE 36 117 117 PHE PHE F . n F 1 37 GLY 37 118 118 GLY GLY F . n F 1 38 THR 38 119 119 THR THR F . n F 1 39 SER 39 120 ? ? ? F . n F 1 40 THR 40 121 ? ? ? F . n G 1 1 THR 1 82 ? ? ? G . n G 1 2 GLY 2 83 ? ? ? G . n G 1 3 THR 3 84 ? ? ? G . n G 1 4 ALA 4 85 ? ? ? G . n G 1 5 ASN 5 86 ? ? ? G . n G 1 6 THR 6 87 87 THR THR G . n G 1 7 LEU 7 88 88 LEU LEU G . n G 1 8 PHE 8 89 89 PHE PHE G . n G 1 9 GLY 9 90 90 GLY GLY G . n G 1 10 THR 10 91 91 THR THR G . n G 1 11 ALA 11 92 92 ALA ALA G . n G 1 12 SER 12 93 93 SER SER G . n G 1 13 THR 13 94 94 THR THR G . n G 1 14 GLY 14 95 95 GLY GLY G . n G 1 15 THR 15 96 96 THR THR G . n G 1 16 SER 16 97 97 SER SER G . n G 1 17 LEU 17 98 98 LEU LEU G . n G 1 18 PHE 18 99 99 PHE PHE G . n G 1 19 SER 19 100 100 SER SER G . n G 1 20 SER 20 101 101 SER SER G . n G 1 21 GLN 21 102 102 GLN GLN G . n G 1 22 ASN 22 103 103 ASN ASN G . n G 1 23 ASN 23 104 104 ASN ASN G . n G 1 24 ALA 24 105 105 ALA ALA G . n G 1 25 PHE 25 106 106 PHE PHE G . n G 1 26 ALA 26 107 107 ALA ALA G . n G 1 27 GLN 27 108 108 GLN GLN G . n G 1 28 ASN 28 109 109 ASN ASN G . n G 1 29 LYS 29 110 110 LYS LYS G . n G 1 30 PRO 30 111 111 PRO PRO G . n G 1 31 THR 31 112 112 THR THR G . n G 1 32 GLY 32 113 113 GLY GLY G . n G 1 33 PHE 33 114 114 PHE PHE G . n G 1 34 GLY 34 115 115 GLY GLY G . n G 1 35 ASN 35 116 116 ASN ASN G . n G 1 36 PHE 36 117 117 PHE PHE G . n G 1 37 GLY 37 118 118 GLY GLY G . n G 1 38 THR 38 119 119 THR THR G . n G 1 39 SER 39 120 ? ? ? G . n G 1 40 THR 40 121 ? ? ? G . n H 1 1 THR 1 82 ? ? ? H . n H 1 2 GLY 2 83 ? ? ? H . n H 1 3 THR 3 84 ? ? ? H . n H 1 4 ALA 4 85 ? ? ? H . n H 1 5 ASN 5 86 ? ? ? H . n H 1 6 THR 6 87 87 THR THR H . n H 1 7 LEU 7 88 88 LEU LEU H . n H 1 8 PHE 8 89 89 PHE PHE H . n H 1 9 GLY 9 90 90 GLY GLY H . n H 1 10 THR 10 91 91 THR THR H . n H 1 11 ALA 11 92 92 ALA ALA H . n H 1 12 SER 12 93 93 SER SER H . n H 1 13 THR 13 94 94 THR THR H . n H 1 14 GLY 14 95 95 GLY GLY H . n H 1 15 THR 15 96 96 THR THR H . n H 1 16 SER 16 97 97 SER SER H . n H 1 17 LEU 17 98 98 LEU LEU H . n H 1 18 PHE 18 99 99 PHE PHE H . n H 1 19 SER 19 100 100 SER SER H . n H 1 20 SER 20 101 101 SER SER H . n H 1 21 GLN 21 102 102 GLN GLN H . n H 1 22 ASN 22 103 103 ASN ASN H . n H 1 23 ASN 23 104 104 ASN ASN H . n H 1 24 ALA 24 105 105 ALA ALA H . n H 1 25 PHE 25 106 106 PHE PHE H . n H 1 26 ALA 26 107 107 ALA ALA H . n H 1 27 GLN 27 108 108 GLN GLN H . n H 1 28 ASN 28 109 109 ASN ASN H . n H 1 29 LYS 29 110 110 LYS LYS H . n H 1 30 PRO 30 111 111 PRO PRO H . n H 1 31 THR 31 112 112 THR THR H . n H 1 32 GLY 32 113 113 GLY GLY H . n H 1 33 PHE 33 114 114 PHE PHE H . n H 1 34 GLY 34 115 115 GLY GLY H . n H 1 35 ASN 35 116 116 ASN ASN H . n H 1 36 PHE 36 117 117 PHE PHE H . n H 1 37 GLY 37 118 118 GLY GLY H . n H 1 38 THR 38 119 119 THR THR H . n H 1 39 SER 39 120 ? ? ? H . n H 1 40 THR 40 121 ? ? ? H . n I 1 1 THR 1 82 ? ? ? I . n I 1 2 GLY 2 83 ? ? ? I . n I 1 3 THR 3 84 ? ? ? I . n I 1 4 ALA 4 85 ? ? ? I . n I 1 5 ASN 5 86 ? ? ? I . n I 1 6 THR 6 87 87 THR THR I . n I 1 7 LEU 7 88 88 LEU LEU I . n I 1 8 PHE 8 89 89 PHE PHE I . n I 1 9 GLY 9 90 90 GLY GLY I . n I 1 10 THR 10 91 91 THR THR I . n I 1 11 ALA 11 92 92 ALA ALA I . n I 1 12 SER 12 93 93 SER SER I . n I 1 13 THR 13 94 94 THR THR I . n I 1 14 GLY 14 95 95 GLY GLY I . n I 1 15 THR 15 96 96 THR THR I . n I 1 16 SER 16 97 97 SER SER I . n I 1 17 LEU 17 98 98 LEU LEU I . n I 1 18 PHE 18 99 99 PHE PHE I . n I 1 19 SER 19 100 100 SER SER I . n I 1 20 SER 20 101 101 SER SER I . n I 1 21 GLN 21 102 102 GLN GLN I . n I 1 22 ASN 22 103 103 ASN ASN I . n I 1 23 ASN 23 104 104 ASN ASN I . n I 1 24 ALA 24 105 105 ALA ALA I . n I 1 25 PHE 25 106 106 PHE PHE I . n I 1 26 ALA 26 107 107 ALA ALA I . n I 1 27 GLN 27 108 108 GLN GLN I . n I 1 28 ASN 28 109 109 ASN ASN I . n I 1 29 LYS 29 110 110 LYS LYS I . n I 1 30 PRO 30 111 111 PRO PRO I . n I 1 31 THR 31 112 112 THR THR I . n I 1 32 GLY 32 113 113 GLY GLY I . n I 1 33 PHE 33 114 114 PHE PHE I . n I 1 34 GLY 34 115 115 GLY GLY I . n I 1 35 ASN 35 116 116 ASN ASN I . n I 1 36 PHE 36 117 117 PHE PHE I . n I 1 37 GLY 37 118 118 GLY GLY I . n I 1 38 THR 38 119 119 THR THR I . n I 1 39 SER 39 120 ? ? ? I . n I 1 40 THR 40 121 ? ? ? I . n J 1 1 THR 1 82 ? ? ? J . n J 1 2 GLY 2 83 ? ? ? J . n J 1 3 THR 3 84 ? ? ? J . n J 1 4 ALA 4 85 ? ? ? J . n J 1 5 ASN 5 86 ? ? ? J . n J 1 6 THR 6 87 87 THR THR J . n J 1 7 LEU 7 88 88 LEU LEU J . n J 1 8 PHE 8 89 89 PHE PHE J . n J 1 9 GLY 9 90 90 GLY GLY J . n J 1 10 THR 10 91 91 THR THR J . n J 1 11 ALA 11 92 92 ALA ALA J . n J 1 12 SER 12 93 93 SER SER J . n J 1 13 THR 13 94 94 THR THR J . n J 1 14 GLY 14 95 95 GLY GLY J . n J 1 15 THR 15 96 96 THR THR J . n J 1 16 SER 16 97 97 SER SER J . n J 1 17 LEU 17 98 98 LEU LEU J . n J 1 18 PHE 18 99 99 PHE PHE J . n J 1 19 SER 19 100 100 SER SER J . n J 1 20 SER 20 101 101 SER SER J . n J 1 21 GLN 21 102 102 GLN GLN J . n J 1 22 ASN 22 103 103 ASN ASN J . n J 1 23 ASN 23 104 104 ASN ASN J . n J 1 24 ALA 24 105 105 ALA ALA J . n J 1 25 PHE 25 106 106 PHE PHE J . n J 1 26 ALA 26 107 107 ALA ALA J . n J 1 27 GLN 27 108 108 GLN GLN J . n J 1 28 ASN 28 109 109 ASN ASN J . n J 1 29 LYS 29 110 110 LYS LYS J . n J 1 30 PRO 30 111 111 PRO PRO J . n J 1 31 THR 31 112 112 THR THR J . n J 1 32 GLY 32 113 113 GLY GLY J . n J 1 33 PHE 33 114 114 PHE PHE J . n J 1 34 GLY 34 115 115 GLY GLY J . n J 1 35 ASN 35 116 116 ASN ASN J . n J 1 36 PHE 36 117 117 PHE PHE J . n J 1 37 GLY 37 118 118 GLY GLY J . n J 1 38 THR 38 119 119 THR THR J . n J 1 39 SER 39 120 ? ? ? J . n J 1 40 THR 40 121 ? ? ? J . n K 1 1 THR 1 82 ? ? ? K . n K 1 2 GLY 2 83 ? ? ? K . n K 1 3 THR 3 84 ? ? ? K . n K 1 4 ALA 4 85 ? ? ? K . n K 1 5 ASN 5 86 ? ? ? K . n K 1 6 THR 6 87 87 THR THR K . n K 1 7 LEU 7 88 88 LEU LEU K . n K 1 8 PHE 8 89 89 PHE PHE K . n K 1 9 GLY 9 90 90 GLY GLY K . n K 1 10 THR 10 91 91 THR THR K . n K 1 11 ALA 11 92 92 ALA ALA K . n K 1 12 SER 12 93 93 SER SER K . n K 1 13 THR 13 94 94 THR THR K . n K 1 14 GLY 14 95 95 GLY GLY K . n K 1 15 THR 15 96 96 THR THR K . n K 1 16 SER 16 97 97 SER SER K . n K 1 17 LEU 17 98 98 LEU LEU K . n K 1 18 PHE 18 99 99 PHE PHE K . n K 1 19 SER 19 100 100 SER SER K . n K 1 20 SER 20 101 101 SER SER K . n K 1 21 GLN 21 102 102 GLN GLN K . n K 1 22 ASN 22 103 103 ASN ASN K . n K 1 23 ASN 23 104 104 ASN ASN K . n K 1 24 ALA 24 105 105 ALA ALA K . n K 1 25 PHE 25 106 106 PHE PHE K . n K 1 26 ALA 26 107 107 ALA ALA K . n K 1 27 GLN 27 108 108 GLN GLN K . n K 1 28 ASN 28 109 109 ASN ASN K . n K 1 29 LYS 29 110 110 LYS LYS K . n K 1 30 PRO 30 111 111 PRO PRO K . n K 1 31 THR 31 112 112 THR THR K . n K 1 32 GLY 32 113 113 GLY GLY K . n K 1 33 PHE 33 114 114 PHE PHE K . n K 1 34 GLY 34 115 115 GLY GLY K . n K 1 35 ASN 35 116 116 ASN ASN K . n K 1 36 PHE 36 117 117 PHE PHE K . n K 1 37 GLY 37 118 118 GLY GLY K . n K 1 38 THR 38 119 119 THR THR K . n K 1 39 SER 39 120 ? ? ? K . n K 1 40 THR 40 121 ? ? ? K . n # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? 'Pavel Afonine' pafonine@lbl.gov ? ? ? ? Python/C++ https://www.phenix-online.org/ ? phenix.real_space_refine ? ? program 1.19.2_4158 1 ? refinement ? ? 'Paul D. Adams' pdadams@lbl.gov ? ? ? ? Python/C++ https://www.phenix-online.org/ ? PHENIX ? ? program 1.19.2_4158 2 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7Q67 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q67 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7Q67 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 36.40 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7Q67 _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.0205 ? 2673 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 2.2088 ? 3608 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.1364 ? 396 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.0094 ? 484 ? f_plane_restr ? ? 'ELECTRON MICROSCOPY' ? 14.4670 ? 847 ? f_dihedral_angle_d ? ? # _struct.entry_id 7Q67 _struct.title 'Cryo-em structure of the Nup98 fibril polymorph 4' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7Q67 _struct_keywords.text 'Nuclear pore complex protein Nup98 functional amyloid fibril PROTEIN FIBRIL, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NUP98_HUMAN _struct_ref.pdbx_db_accession P52948 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code TGTANTLFGTASTGTSLFSSQNNAFAQNKPTGFGNFGTST _struct_ref.pdbx_align_begin 85 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7Q67 A 1 ? 40 ? P52948 85 ? 124 ? 82 121 2 1 7Q67 B 1 ? 40 ? P52948 85 ? 124 ? 82 121 3 1 7Q67 C 1 ? 40 ? P52948 85 ? 124 ? 82 121 4 1 7Q67 D 1 ? 40 ? P52948 85 ? 124 ? 82 121 5 1 7Q67 E 1 ? 40 ? P52948 85 ? 124 ? 82 121 6 1 7Q67 F 1 ? 40 ? P52948 85 ? 124 ? 82 121 7 1 7Q67 G 1 ? 40 ? P52948 85 ? 124 ? 82 121 8 1 7Q67 H 1 ? 40 ? P52948 85 ? 124 ? 82 121 9 1 7Q67 I 1 ? 40 ? P52948 85 ? 124 ? 82 121 10 1 7Q67 J 1 ? 40 ? P52948 85 ? 124 ? 82 121 11 1 7Q67 K 1 ? 40 ? P52948 85 ? 124 ? 82 121 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details undecameric _pdbx_struct_assembly.oligomeric_count 11 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 26760 ? 1 MORE -155 ? 1 'SSA (A^2)' 12480 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASN A 22 ? ASN A 28 ? ASN A 103 ASN A 109 AA1 2 ASN C 22 ? ASN C 28 ? ASN C 103 ASN C 109 AA1 3 ASN E 22 ? ASN E 28 ? ASN E 103 ASN E 109 AA1 4 ASN G 22 ? ASN G 28 ? ASN G 103 ASN G 109 AA1 5 ASN I 22 ? ASN I 28 ? ASN I 103 ASN I 109 AA1 6 ASN K 22 ? ASN K 28 ? ASN K 103 ASN K 109 AA2 1 ASN B 22 ? ASN B 28 ? ASN B 103 ASN B 109 AA2 2 ASN D 22 ? ASN D 28 ? ASN D 103 ASN D 109 AA2 3 ASN F 22 ? ASN F 28 ? ASN F 103 ASN F 109 AA2 4 ASN H 22 ? ASN H 28 ? ASN H 103 ASN H 109 AA2 5 ASN J 22 ? ASN J 28 ? ASN J 103 ASN J 109 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ALA A 24 ? N ALA A 105 O ASN C 23 ? O ASN C 104 AA1 2 3 N ALA C 24 ? N ALA C 105 O ASN E 23 ? O ASN E 104 AA1 3 4 N ALA E 24 ? N ALA E 105 O ASN G 23 ? O ASN G 104 AA1 4 5 N ALA G 24 ? N ALA G 105 O ASN I 23 ? O ASN I 104 AA1 5 6 N ALA I 24 ? N ALA I 105 O ASN K 23 ? O ASN K 104 AA2 1 2 N ALA B 24 ? N ALA B 105 O ASN D 23 ? O ASN D 104 AA2 2 3 N ALA D 24 ? N ALA D 105 O ASN F 23 ? O ASN F 104 AA2 3 4 N ALA F 24 ? N ALA F 105 O ASN H 23 ? O ASN H 104 AA2 4 5 N ALA H 24 ? N ALA H 105 O ASN J 23 ? O ASN J 104 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A LEU 88 ? ? CB A LEU 88 ? ? CG A LEU 88 ? ? 132.23 115.30 16.93 2.30 N 2 1 CA B LEU 88 ? ? CB B LEU 88 ? ? CG B LEU 88 ? ? 132.22 115.30 16.92 2.30 N 3 1 CA C LEU 88 ? ? CB C LEU 88 ? ? CG C LEU 88 ? ? 132.23 115.30 16.93 2.30 N 4 1 CA D LEU 88 ? ? CB D LEU 88 ? ? CG D LEU 88 ? ? 132.23 115.30 16.93 2.30 N 5 1 CA E LEU 88 ? ? CB E LEU 88 ? ? CG E LEU 88 ? ? 132.23 115.30 16.93 2.30 N 6 1 CA F LEU 88 ? ? CB F LEU 88 ? ? CG F LEU 88 ? ? 132.22 115.30 16.92 2.30 N 7 1 CA G LEU 88 ? ? CB G LEU 88 ? ? CG G LEU 88 ? ? 132.23 115.30 16.93 2.30 N 8 1 CA H LEU 88 ? ? CB H LEU 88 ? ? CG H LEU 88 ? ? 132.24 115.30 16.94 2.30 N 9 1 CA I LEU 88 ? ? CB I LEU 88 ? ? CG I LEU 88 ? ? 132.21 115.30 16.91 2.30 N 10 1 CA J LEU 88 ? ? CB J LEU 88 ? ? CG J LEU 88 ? ? 132.23 115.30 16.93 2.30 N 11 1 CA K LEU 88 ? ? CB K LEU 88 ? ? CG K LEU 88 ? ? 132.24 115.30 16.94 2.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 96 ? ? 29.67 58.47 2 1 ASN A 116 ? ? 53.04 81.62 3 1 THR B 96 ? ? 29.72 58.46 4 1 ASN B 116 ? ? 52.97 81.64 5 1 THR C 96 ? ? 29.66 58.48 6 1 ASN C 116 ? ? 53.05 81.62 7 1 THR D 96 ? ? 29.69 58.49 8 1 ASN D 116 ? ? 52.98 81.65 9 1 THR E 96 ? ? 29.67 58.50 10 1 ASN E 116 ? ? 53.02 81.63 11 1 THR F 96 ? ? 29.66 58.48 12 1 ASN F 116 ? ? 53.00 81.61 13 1 THR G 96 ? ? 29.64 58.52 14 1 ASN G 116 ? ? 52.93 81.69 15 1 THR H 96 ? ? 29.69 58.44 16 1 ASN H 116 ? ? 52.99 81.69 17 1 THR I 96 ? ? 29.68 58.45 18 1 ASN I 116 ? ? 52.97 81.66 19 1 THR J 96 ? ? 29.72 58.45 20 1 ASN J 116 ? ? 52.99 81.66 21 1 THR K 96 ? ? 29.72 58.45 22 1 ASN K 116 ? ? 52.91 81.67 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 GLY A 113 ? ? PHE A 114 ? ? -138.13 2 1 GLY B 113 ? ? PHE B 114 ? ? -138.10 3 1 GLY C 113 ? ? PHE C 114 ? ? -138.15 4 1 GLY D 113 ? ? PHE D 114 ? ? -138.10 5 1 GLY E 113 ? ? PHE E 114 ? ? -138.08 6 1 GLY F 113 ? ? PHE F 114 ? ? -138.14 7 1 GLY G 113 ? ? PHE G 114 ? ? -138.09 8 1 GLY H 113 ? ? PHE H 114 ? ? -138.14 9 1 GLY I 113 ? ? PHE I 114 ? ? -138.13 10 1 GLY J 113 ? ? PHE J 114 ? ? -138.09 11 1 GLY K 113 ? ? PHE K 114 ? ? -138.11 # _space_group_symop.id 1 _space_group_symop.operation_xyz x,y,z # _em_3d_fitting.entry_id 7Q67 _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7Q67 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 12674 _em_3d_reconstruction.resolution 3.37 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.0 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details 'The Nup98 polymorph 4 fibril is formed by two protofilaments, consisting of Nup98 monomers.' _em_entity_assembly.name 'The nuclear pore complex protein Nup98 fibril polymorph 4' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7Q67 _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max 2000 _em_imaging.nominal_defocus_min 700 _em_imaging.nominal_magnification 81000 _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 293 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 7Q67 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7Q67 _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.reconstruction_method HELICAL _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A THR 82 ? A THR 1 2 1 Y 1 A GLY 83 ? A GLY 2 3 1 Y 1 A THR 84 ? A THR 3 4 1 Y 1 A ALA 85 ? A ALA 4 5 1 Y 1 A ASN 86 ? A ASN 5 6 1 Y 1 A SER 120 ? A SER 39 7 1 Y 1 A THR 121 ? A THR 40 8 1 Y 1 B THR 82 ? B THR 1 9 1 Y 1 B GLY 83 ? B GLY 2 10 1 Y 1 B THR 84 ? B THR 3 11 1 Y 1 B ALA 85 ? B ALA 4 12 1 Y 1 B ASN 86 ? B ASN 5 13 1 Y 1 B SER 120 ? B SER 39 14 1 Y 1 B THR 121 ? B THR 40 15 1 Y 1 C THR 82 ? C THR 1 16 1 Y 1 C GLY 83 ? C GLY 2 17 1 Y 1 C THR 84 ? C THR 3 18 1 Y 1 C ALA 85 ? C ALA 4 19 1 Y 1 C ASN 86 ? C ASN 5 20 1 Y 1 C SER 120 ? C SER 39 21 1 Y 1 C THR 121 ? C THR 40 22 1 Y 1 D THR 82 ? D THR 1 23 1 Y 1 D GLY 83 ? D GLY 2 24 1 Y 1 D THR 84 ? D THR 3 25 1 Y 1 D ALA 85 ? D ALA 4 26 1 Y 1 D ASN 86 ? D ASN 5 27 1 Y 1 D SER 120 ? D SER 39 28 1 Y 1 D THR 121 ? D THR 40 29 1 Y 1 E THR 82 ? E THR 1 30 1 Y 1 E GLY 83 ? E GLY 2 31 1 Y 1 E THR 84 ? E THR 3 32 1 Y 1 E ALA 85 ? E ALA 4 33 1 Y 1 E ASN 86 ? E ASN 5 34 1 Y 1 E SER 120 ? E SER 39 35 1 Y 1 E THR 121 ? E THR 40 36 1 Y 1 F THR 82 ? F THR 1 37 1 Y 1 F GLY 83 ? F GLY 2 38 1 Y 1 F THR 84 ? F THR 3 39 1 Y 1 F ALA 85 ? F ALA 4 40 1 Y 1 F ASN 86 ? F ASN 5 41 1 Y 1 F SER 120 ? F SER 39 42 1 Y 1 F THR 121 ? F THR 40 43 1 Y 1 G THR 82 ? G THR 1 44 1 Y 1 G GLY 83 ? G GLY 2 45 1 Y 1 G THR 84 ? G THR 3 46 1 Y 1 G ALA 85 ? G ALA 4 47 1 Y 1 G ASN 86 ? G ASN 5 48 1 Y 1 G SER 120 ? G SER 39 49 1 Y 1 G THR 121 ? G THR 40 50 1 Y 1 H THR 82 ? H THR 1 51 1 Y 1 H GLY 83 ? H GLY 2 52 1 Y 1 H THR 84 ? H THR 3 53 1 Y 1 H ALA 85 ? H ALA 4 54 1 Y 1 H ASN 86 ? H ASN 5 55 1 Y 1 H SER 120 ? H SER 39 56 1 Y 1 H THR 121 ? H THR 40 57 1 Y 1 I THR 82 ? I THR 1 58 1 Y 1 I GLY 83 ? I GLY 2 59 1 Y 1 I THR 84 ? I THR 3 60 1 Y 1 I ALA 85 ? I ALA 4 61 1 Y 1 I ASN 86 ? I ASN 5 62 1 Y 1 I SER 120 ? I SER 39 63 1 Y 1 I THR 121 ? I THR 40 64 1 Y 1 J THR 82 ? J THR 1 65 1 Y 1 J GLY 83 ? J GLY 2 66 1 Y 1 J THR 84 ? J THR 3 67 1 Y 1 J ALA 85 ? J ALA 4 68 1 Y 1 J ASN 86 ? J ASN 5 69 1 Y 1 J SER 120 ? J SER 39 70 1 Y 1 J THR 121 ? J THR 40 71 1 Y 1 K THR 82 ? K THR 1 72 1 Y 1 K GLY 83 ? K GLY 2 73 1 Y 1 K THR 84 ? K THR 3 74 1 Y 1 K ALA 85 ? K ALA 4 75 1 Y 1 K ASN 86 ? K ASN 5 76 1 Y 1 K SER 120 ? K SER 39 77 1 Y 1 K THR 121 ? K THR 40 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 GLN N N N N 31 GLN CA C N S 32 GLN C C N N 33 GLN O O N N 34 GLN CB C N N 35 GLN CG C N N 36 GLN CD C N N 37 GLN OE1 O N N 38 GLN NE2 N N N 39 GLN OXT O N N 40 GLN H H N N 41 GLN H2 H N N 42 GLN HA H N N 43 GLN HB2 H N N 44 GLN HB3 H N N 45 GLN HG2 H N N 46 GLN HG3 H N N 47 GLN HE21 H N N 48 GLN HE22 H N N 49 GLN HXT H N N 50 GLY N N N N 51 GLY CA C N N 52 GLY C C N N 53 GLY O O N N 54 GLY OXT O N N 55 GLY H H N N 56 GLY H2 H N N 57 GLY HA2 H N N 58 GLY HA3 H N N 59 GLY HXT H N N 60 LEU N N N N 61 LEU CA C N S 62 LEU C C N N 63 LEU O O N N 64 LEU CB C N N 65 LEU CG C N N 66 LEU CD1 C N N 67 LEU CD2 C N N 68 LEU OXT O N N 69 LEU H H N N 70 LEU H2 H N N 71 LEU HA H N N 72 LEU HB2 H N N 73 LEU HB3 H N N 74 LEU HG H N N 75 LEU HD11 H N N 76 LEU HD12 H N N 77 LEU HD13 H N N 78 LEU HD21 H N N 79 LEU HD22 H N N 80 LEU HD23 H N N 81 LEU HXT H N N 82 LYS N N N N 83 LYS CA C N S 84 LYS C C N N 85 LYS O O N N 86 LYS CB C N N 87 LYS CG C N N 88 LYS CD C N N 89 LYS CE C N N 90 LYS NZ N N N 91 LYS OXT O N N 92 LYS H H N N 93 LYS H2 H N N 94 LYS HA H N N 95 LYS HB2 H N N 96 LYS HB3 H N N 97 LYS HG2 H N N 98 LYS HG3 H N N 99 LYS HD2 H N N 100 LYS HD3 H N N 101 LYS HE2 H N N 102 LYS HE3 H N N 103 LYS HZ1 H N N 104 LYS HZ2 H N N 105 LYS HZ3 H N N 106 LYS HXT H N N 107 PHE N N N N 108 PHE CA C N S 109 PHE C C N N 110 PHE O O N N 111 PHE CB C N N 112 PHE CG C Y N 113 PHE CD1 C Y N 114 PHE CD2 C Y N 115 PHE CE1 C Y N 116 PHE CE2 C Y N 117 PHE CZ C Y N 118 PHE OXT O N N 119 PHE H H N N 120 PHE H2 H N N 121 PHE HA H N N 122 PHE HB2 H N N 123 PHE HB3 H N N 124 PHE HD1 H N N 125 PHE HD2 H N N 126 PHE HE1 H N N 127 PHE HE2 H N N 128 PHE HZ H N N 129 PHE HXT H N N 130 PRO N N N N 131 PRO CA C N S 132 PRO C C N N 133 PRO O O N N 134 PRO CB C N N 135 PRO CG C N N 136 PRO CD C N N 137 PRO OXT O N N 138 PRO H H N N 139 PRO HA H N N 140 PRO HB2 H N N 141 PRO HB3 H N N 142 PRO HG2 H N N 143 PRO HG3 H N N 144 PRO HD2 H N N 145 PRO HD3 H N N 146 PRO HXT H N N 147 SER N N N N 148 SER CA C N S 149 SER C C N N 150 SER O O N N 151 SER CB C N N 152 SER OG O N N 153 SER OXT O N N 154 SER H H N N 155 SER H2 H N N 156 SER HA H N N 157 SER HB2 H N N 158 SER HB3 H N N 159 SER HG H N N 160 SER HXT H N N 161 THR N N N N 162 THR CA C N S 163 THR C C N N 164 THR O O N N 165 THR CB C N R 166 THR OG1 O N N 167 THR CG2 C N N 168 THR OXT O N N 169 THR H H N N 170 THR H2 H N N 171 THR HA H N N 172 THR HB H N N 173 THR HG1 H N N 174 THR HG21 H N N 175 THR HG22 H N N 176 THR HG23 H N N 177 THR HXT H N N 178 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 GLN N CA sing N N 29 GLN N H sing N N 30 GLN N H2 sing N N 31 GLN CA C sing N N 32 GLN CA CB sing N N 33 GLN CA HA sing N N 34 GLN C O doub N N 35 GLN C OXT sing N N 36 GLN CB CG sing N N 37 GLN CB HB2 sing N N 38 GLN CB HB3 sing N N 39 GLN CG CD sing N N 40 GLN CG HG2 sing N N 41 GLN CG HG3 sing N N 42 GLN CD OE1 doub N N 43 GLN CD NE2 sing N N 44 GLN NE2 HE21 sing N N 45 GLN NE2 HE22 sing N N 46 GLN OXT HXT sing N N 47 GLY N CA sing N N 48 GLY N H sing N N 49 GLY N H2 sing N N 50 GLY CA C sing N N 51 GLY CA HA2 sing N N 52 GLY CA HA3 sing N N 53 GLY C O doub N N 54 GLY C OXT sing N N 55 GLY OXT HXT sing N N 56 LEU N CA sing N N 57 LEU N H sing N N 58 LEU N H2 sing N N 59 LEU CA C sing N N 60 LEU CA CB sing N N 61 LEU CA HA sing N N 62 LEU C O doub N N 63 LEU C OXT sing N N 64 LEU CB CG sing N N 65 LEU CB HB2 sing N N 66 LEU CB HB3 sing N N 67 LEU CG CD1 sing N N 68 LEU CG CD2 sing N N 69 LEU CG HG sing N N 70 LEU CD1 HD11 sing N N 71 LEU CD1 HD12 sing N N 72 LEU CD1 HD13 sing N N 73 LEU CD2 HD21 sing N N 74 LEU CD2 HD22 sing N N 75 LEU CD2 HD23 sing N N 76 LEU OXT HXT sing N N 77 LYS N CA sing N N 78 LYS N H sing N N 79 LYS N H2 sing N N 80 LYS CA C sing N N 81 LYS CA CB sing N N 82 LYS CA HA sing N N 83 LYS C O doub N N 84 LYS C OXT sing N N 85 LYS CB CG sing N N 86 LYS CB HB2 sing N N 87 LYS CB HB3 sing N N 88 LYS CG CD sing N N 89 LYS CG HG2 sing N N 90 LYS CG HG3 sing N N 91 LYS CD CE sing N N 92 LYS CD HD2 sing N N 93 LYS CD HD3 sing N N 94 LYS CE NZ sing N N 95 LYS CE HE2 sing N N 96 LYS CE HE3 sing N N 97 LYS NZ HZ1 sing N N 98 LYS NZ HZ2 sing N N 99 LYS NZ HZ3 sing N N 100 LYS OXT HXT sing N N 101 PHE N CA sing N N 102 PHE N H sing N N 103 PHE N H2 sing N N 104 PHE CA C sing N N 105 PHE CA CB sing N N 106 PHE CA HA sing N N 107 PHE C O doub N N 108 PHE C OXT sing N N 109 PHE CB CG sing N N 110 PHE CB HB2 sing N N 111 PHE CB HB3 sing N N 112 PHE CG CD1 doub Y N 113 PHE CG CD2 sing Y N 114 PHE CD1 CE1 sing Y N 115 PHE CD1 HD1 sing N N 116 PHE CD2 CE2 doub Y N 117 PHE CD2 HD2 sing N N 118 PHE CE1 CZ doub Y N 119 PHE CE1 HE1 sing N N 120 PHE CE2 CZ sing Y N 121 PHE CE2 HE2 sing N N 122 PHE CZ HZ sing N N 123 PHE OXT HXT sing N N 124 PRO N CA sing N N 125 PRO N CD sing N N 126 PRO N H sing N N 127 PRO CA C sing N N 128 PRO CA CB sing N N 129 PRO CA HA sing N N 130 PRO C O doub N N 131 PRO C OXT sing N N 132 PRO CB CG sing N N 133 PRO CB HB2 sing N N 134 PRO CB HB3 sing N N 135 PRO CG CD sing N N 136 PRO CG HG2 sing N N 137 PRO CG HG3 sing N N 138 PRO CD HD2 sing N N 139 PRO CD HD3 sing N N 140 PRO OXT HXT sing N N 141 SER N CA sing N N 142 SER N H sing N N 143 SER N H2 sing N N 144 SER CA C sing N N 145 SER CA CB sing N N 146 SER CA HA sing N N 147 SER C O doub N N 148 SER C OXT sing N N 149 SER CB OG sing N N 150 SER CB HB2 sing N N 151 SER CB HB3 sing N N 152 SER OG HG sing N N 153 SER OXT HXT sing N N 154 THR N CA sing N N 155 THR N H sing N N 156 THR N H2 sing N N 157 THR CA C sing N N 158 THR CA CB sing N N 159 THR CA HA sing N N 160 THR C O doub N N 161 THR C OXT sing N N 162 THR CB OG1 sing N N 163 THR CB CG2 sing N N 164 THR CB HB sing N N 165 THR OG1 HG1 sing N N 166 THR CG2 HG21 sing N N 167 THR CG2 HG22 sing N N 168 THR CG2 HG23 sing N N 169 THR OXT HXT sing N N 170 # _em_admin.entry_id 7Q67 _em_admin.current_status REL _em_admin.deposition_date 2021-11-05 _em_admin.deposition_site PDBE _em_admin.last_update 2024-07-17 _em_admin.map_release_date 2022-10-12 _em_admin.title 'Cryo-em structure of the Nup98 fibril polymorph 4' # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.angular_rotation_per_subunit 178.49 _em_helical_entity.axial_rise_per_subunit 2.37 _em_helical_entity.axial_symmetry C1 _em_helical_entity.details ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 41 _em_image_recording.average_exposure_time 2.557 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images 4180 _em_image_recording.avg_electron_dose_per_subtomogram ? # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details ? _em_particle_selection.method ? _em_particle_selection.num_particles_selected 356482 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'MODEL REFINEMENT' ? PHENIX ? ? 1 ? 10 'MODEL REFINEMENT' ? Coot ? ? 1 ? 11 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 13 CLASSIFICATION ? ? ? 1 ? ? 14 RECONSTRUCTION ? RELION 3.1 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'European Research Council (ERC)' Germany 787679 1 'German Research Foundation (DFG)' Germany 656281 2 # _atom_sites.entry_id 7Q67 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_