HEADER OXIDOREDUCTASE 10-NOV-21 7Q84 TITLE CRYSTAL STRUCTURE OF HUMAN PEROXISOMAL ACYL-CO-A OXIDASE 1A, APO-FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM 2 OF PEROXISOMAL ACYL-COENZYME A OXIDASE 1; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.3.3.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ACOX1, ACOX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ACYL-CO-A OXIDASE, PEROXISOMAL ENZYME, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.R.SONANI,A.BLAT,G.DUBIN REVDAT 2 31-JAN-24 7Q84 1 REMARK REVDAT 1 02-MAR-22 7Q84 0 JRNL AUTH R.R.SONANI,A.BLAT,G.DUBIN JRNL TITL CRYSTAL STRUCTURES OF APO- AND FAD-BOUND HUMAN PEROXISOMAL JRNL TITL 2 ACYL-COA OXIDASE PROVIDE MECHANISTIC BASIS EXPLAINING JRNL TITL 3 CLINICAL OBSERVATIONS. JRNL REF INT.J.BIOL.MACROMOL. V. 205 203 2022 JRNL REFN ISSN 0141-8130 JRNL PMID 35149097 JRNL DOI 10.1016/J.IJBIOMAC.2022.02.008 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 104443 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5573 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7623 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE SET COUNT : 423 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9979 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 85 REMARK 3 SOLVENT ATOMS : 492 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.06000 REMARK 3 B22 (A**2) : -3.18000 REMARK 3 B33 (A**2) : -2.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.154 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.326 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 10284 ; 0.015 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 9804 ; 0.004 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 13877 ; 1.969 ; 1.646 REMARK 3 BOND ANGLES OTHERS (DEGREES): 22573 ; 1.482 ; 1.576 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1246 ; 6.869 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 539 ;35.130 ;22.134 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1784 ;17.067 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 66 ;18.234 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1324 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 11478 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2366 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 709 REMARK 3 ORIGIN FOR THE GROUP (A): -17.4645 -13.9176 8.1983 REMARK 3 T TENSOR REMARK 3 T11: 0.0625 T22: 0.0138 REMARK 3 T33: 0.0138 T12: 0.0137 REMARK 3 T13: -0.0079 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.0770 L22: 0.1371 REMARK 3 L33: 0.3086 L12: 0.0472 REMARK 3 L13: 0.1529 L23: 0.1084 REMARK 3 S TENSOR REMARK 3 S11: 0.0372 S12: 0.0046 S13: -0.0007 REMARK 3 S21: -0.0322 S22: -0.0321 S23: 0.0268 REMARK 3 S31: 0.0681 S32: 0.0047 S33: -0.0051 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 707 REMARK 3 ORIGIN FOR THE GROUP (A): -3.7827 7.2672 25.5720 REMARK 3 T TENSOR REMARK 3 T11: 0.0258 T22: 0.0109 REMARK 3 T33: 0.0273 T12: -0.0102 REMARK 3 T13: -0.0161 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 0.0183 L22: 0.2828 REMARK 3 L33: 0.3390 L12: -0.0130 REMARK 3 L13: 0.0575 L23: 0.1663 REMARK 3 S TENSOR REMARK 3 S11: -0.0209 S12: 0.0122 S13: 0.0108 REMARK 3 S21: 0.0570 S22: 0.0064 S23: -0.0250 REMARK 3 S31: -0.0241 S32: 0.0508 S33: 0.0145 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7Q84 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1292119165. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 80.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110023 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 48.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 13.90 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.31900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1IS2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5 % PEG 8000, 0.09 M AMMONIUM REMARK 280 SULFATE, 0.05 M SODIUM CACODYLATE (PH 6.0), VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.93550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.78200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.61100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.78200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.93550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 66.61100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 PRO A 268 REMARK 465 LEU A 269 REMARK 465 SER A 270 REMARK 465 ASN A 271 REMARK 465 LYS A 272 REMARK 465 LEU A 273 REMARK 465 THR A 274 REMARK 465 TYR A 275 REMARK 465 GLY A 276 REMARK 465 THR A 277 REMARK 465 GLU A 357 REMARK 465 GLY A 358 REMARK 465 ILE A 359 REMARK 465 GLY A 360 REMARK 465 GLN A 361 REMARK 465 GLY A 362 REMARK 465 ASP A 363 REMARK 465 ARG A 462 REMARK 465 ILE A 463 REMARK 465 GLN A 464 REMARK 465 PRO A 465 REMARK 465 GLN A 466 REMARK 465 GLN A 467 REMARK 465 VAL A 468 REMARK 465 ALA A 469 REMARK 465 VAL A 470 REMARK 465 TRP A 471 REMARK 465 LEU A 656 REMARK 465 GLN A 657 REMARK 465 SER A 658 REMARK 465 LYS A 659 REMARK 465 LEU A 660 REMARK 465 MET B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 PRO B 268 REMARK 465 LEU B 269 REMARK 465 SER B 270 REMARK 465 ASN B 271 REMARK 465 LYS B 272 REMARK 465 LEU B 273 REMARK 465 THR B 274 REMARK 465 TYR B 275 REMARK 465 GLY B 276 REMARK 465 THR B 277 REMARK 465 GLY B 358 REMARK 465 ILE B 359 REMARK 465 GLY B 360 REMARK 465 GLN B 361 REMARK 465 GLY B 362 REMARK 465 ASP B 363 REMARK 465 LEU B 364 REMARK 465 PRO B 459 REMARK 465 SER B 460 REMARK 465 GLN B 461 REMARK 465 ARG B 462 REMARK 465 ILE B 463 REMARK 465 GLN B 464 REMARK 465 PRO B 465 REMARK 465 GLN B 466 REMARK 465 GLN B 467 REMARK 465 VAL B 468 REMARK 465 ALA B 469 REMARK 465 VAL B 470 REMARK 465 TRP B 471 REMARK 465 LEU B 656 REMARK 465 GLN B 657 REMARK 465 SER B 658 REMARK 465 LYS B 659 REMARK 465 LEU B 660 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 365 OG REMARK 470 LEU A 367 CG CD1 CD2 REMARK 470 THR A 473 OG1 CG2 REMARK 470 THR B 473 OG1 CG2 REMARK 470 LYS B 643 CG CD CE NZ REMARK 470 GLU B 648 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 106 -62.53 -141.87 REMARK 500 GLN A 138 -60.14 -109.17 REMARK 500 TRP A 176 -40.72 108.76 REMARK 500 LYS A 182 -30.70 -131.97 REMARK 500 LYS A 196 -138.03 56.27 REMARK 500 GLN A 309 139.18 -172.74 REMARK 500 SER A 310 -170.96 70.62 REMARK 500 ILE A 312 -83.03 -99.38 REMARK 500 SER A 365 14.63 -62.57 REMARK 500 THR A 473 120.57 154.84 REMARK 500 HIS A 652 -40.27 -166.48 REMARK 500 ARG B 96 150.66 -35.51 REMARK 500 MET B 106 -51.59 -133.11 REMARK 500 SER B 167 78.11 -113.67 REMARK 500 TRP B 176 -40.70 112.65 REMARK 500 LYS B 196 -128.29 58.47 REMARK 500 ASN B 244 59.11 38.83 REMARK 500 GLN B 309 146.96 -171.88 REMARK 500 SER B 310 177.90 65.19 REMARK 500 ILE B 312 -81.82 -97.86 REMARK 500 THR B 473 79.90 154.44 REMARK 500 REMARK 500 REMARK: NULL DBREF 7Q84 A -6 660 PDB 7Q84 7Q84 -6 660 DBREF 7Q84 B -6 660 PDB 7Q84 7Q84 -6 660 SEQRES 1 A 667 MET HIS HIS HIS HIS HIS HIS MET ASN PRO ASP LEU ARG SEQRES 2 A 667 ARG GLU ARG ASP SER ALA SER PHE ASN PRO GLU LEU LEU SEQRES 3 A 667 THR HIS ILE LEU ASP GLY SER PRO GLU LYS THR ARG ARG SEQRES 4 A 667 ARG ARG GLU ILE GLU ASN MET ILE LEU ASN ASP PRO ASP SEQRES 5 A 667 PHE GLN HIS GLU ASP LEU ASN PHE LEU THR ARG SER GLN SEQRES 6 A 667 ARG TYR GLU VAL ALA VAL ARG LYS SER ALA ILE MET VAL SEQRES 7 A 667 LYS LYS MET ARG GLU PHE GLY ILE ALA ASP PRO ASP GLU SEQRES 8 A 667 ILE MET TRP PHE LYS ASN PHE VAL HIS ARG GLY ARG PRO SEQRES 9 A 667 GLU PRO LEU ASP LEU HIS LEU GLY MET PHE LEU PRO THR SEQRES 10 A 667 LEU LEU HIS GLN ALA THR ALA GLU GLN GLN GLU ARG PHE SEQRES 11 A 667 PHE MET PRO ALA TRP ASN LEU GLU ILE ILE GLY THR TYR SEQRES 12 A 667 ALA GLN THR GLU MET GLY HIS GLY THR HIS LEU ARG GLY SEQRES 13 A 667 LEU GLU THR THR ALA THR TYR ASP PRO GLU THR GLN GLU SEQRES 14 A 667 PHE ILE LEU ASN SER PRO THR VAL THR SER ILE LYS TRP SEQRES 15 A 667 TRP PRO GLY GLY LEU GLY LYS THR SER ASN HIS ALA ILE SEQRES 16 A 667 VAL LEU ALA GLN LEU ILE THR LYS GLY LYS CSO TYR GLY SEQRES 17 A 667 LEU HIS ALA PHE ILE VAL PRO ILE ARG GLU ILE GLY THR SEQRES 18 A 667 HIS LYS PRO LEU PRO GLY ILE THR VAL GLY ASP ILE GLY SEQRES 19 A 667 PRO LYS PHE GLY TYR ASP GLU ILE ASP ASN GLY TYR LEU SEQRES 20 A 667 LYS MET ASP ASN HIS ARG ILE PRO ARG GLU ASN MET LEU SEQRES 21 A 667 MET LYS TYR ALA GLN VAL LYS PRO ASP GLY THR TYR VAL SEQRES 22 A 667 LYS PRO LEU SER ASN LYS LEU THR TYR GLY THR MET VAL SEQRES 23 A 667 PHE VAL ARG SER PHE LEU VAL GLY GLU ALA ALA ARG ALA SEQRES 24 A 667 LEU SER LYS ALA CYS THR ILE ALA ILE ARG TYR SER ALA SEQRES 25 A 667 VAL ARG HIS GLN SER GLU ILE LYS PRO GLY GLU PRO GLU SEQRES 26 A 667 PRO GLN ILE LEU ASP PHE GLN THR GLN GLN TYR LYS LEU SEQRES 27 A 667 PHE PRO LEU LEU ALA THR ALA TYR ALA PHE GLN PHE VAL SEQRES 28 A 667 GLY ALA TYR MET LYS GLU THR TYR HIS ARG ILE ASN GLU SEQRES 29 A 667 GLY ILE GLY GLN GLY ASP LEU SER GLU LEU PRO GLU LEU SEQRES 30 A 667 HIS ALA LEU THR ALA GLY LEU LYS ALA PHE THR SER TRP SEQRES 31 A 667 THR ALA ASN THR GLY ILE GLU ALA CYS ARG MET ALA CYS SEQRES 32 A 667 GLY GLY HIS GLY TYR SER HIS CYS SER GLY LEU PRO ASN SEQRES 33 A 667 ILE TYR VAL ASN PHE THR PRO SER CYS THR PHE GLU GLY SEQRES 34 A 667 GLU ASN THR VAL MET MET LEU GLN THR ALA ARG PHE LEU SEQRES 35 A 667 MET LYS SER TYR ASP GLN VAL HIS SER GLY LYS LEU VAL SEQRES 36 A 667 CSO GLY MET VAL SER TYR LEU ASN ASP LEU PRO SER GLN SEQRES 37 A 667 ARG ILE GLN PRO GLN GLN VAL ALA VAL TRP PRO THR MET SEQRES 38 A 667 VAL ASP ILE ASN SER PRO GLU SER LEU THR GLU ALA TYR SEQRES 39 A 667 LYS LEU ARG ALA ALA ARG LEU VAL GLU ILE ALA ALA LYS SEQRES 40 A 667 ASN LEU GLN LYS GLU VAL ILE HIS ARG LYS SER LYS GLU SEQRES 41 A 667 VAL ALA TRP ASN LEU THR SER VAL ASP LEU VAL ARG ALA SEQRES 42 A 667 SER GLU ALA HIS CYS HIS TYR VAL VAL VAL LYS LEU PHE SEQRES 43 A 667 SER GLU LYS LEU LEU LYS ILE GLN ASP LYS ALA ILE GLN SEQRES 44 A 667 ALA VAL LEU ARG SER LEU CYS LEU LEU TYR SER LEU TYR SEQRES 45 A 667 GLY ILE SER GLN ASN ALA GLY ASP PHE LEU GLN GLY SER SEQRES 46 A 667 ILE MET THR GLU PRO GLN ILE THR GLN VAL ASN GLN ARG SEQRES 47 A 667 VAL LYS GLU LEU LEU THR LEU ILE ARG SER ASP ALA VAL SEQRES 48 A 667 ALA LEU VAL ASP ALA PHE ASP PHE GLN ASP VAL THR LEU SEQRES 49 A 667 GLY SER VAL LEU GLY ARG TYR ASP GLY ASN VAL TYR GLU SEQRES 50 A 667 ASN LEU PHE GLU TRP ALA LYS ASN SER PRO LEU ASN LYS SEQRES 51 A 667 ALA GLU VAL HIS GLU SER TYR LYS HIS LEU LYS SER LEU SEQRES 52 A 667 GLN SER LYS LEU SEQRES 1 B 667 MET HIS HIS HIS HIS HIS HIS MET ASN PRO ASP LEU ARG SEQRES 2 B 667 ARG GLU ARG ASP SER ALA SER PHE ASN PRO GLU LEU LEU SEQRES 3 B 667 THR HIS ILE LEU ASP GLY SER PRO GLU LYS THR ARG ARG SEQRES 4 B 667 ARG ARG GLU ILE GLU ASN MET ILE LEU ASN ASP PRO ASP SEQRES 5 B 667 PHE GLN HIS GLU ASP LEU ASN PHE LEU THR ARG SER GLN SEQRES 6 B 667 ARG TYR GLU VAL ALA VAL ARG LYS SER ALA ILE MET VAL SEQRES 7 B 667 LYS LYS MET ARG GLU PHE GLY ILE ALA ASP PRO ASP GLU SEQRES 8 B 667 ILE MET TRP PHE LYS ASN PHE VAL HIS ARG GLY ARG PRO SEQRES 9 B 667 GLU PRO LEU ASP LEU HIS LEU GLY MET PHE LEU PRO THR SEQRES 10 B 667 LEU LEU HIS GLN ALA THR ALA GLU GLN GLN GLU ARG PHE SEQRES 11 B 667 PHE MET PRO ALA TRP ASN LEU GLU ILE ILE GLY THR TYR SEQRES 12 B 667 ALA GLN THR GLU MET GLY HIS GLY THR HIS LEU ARG GLY SEQRES 13 B 667 LEU GLU THR THR ALA THR TYR ASP PRO GLU THR GLN GLU SEQRES 14 B 667 PHE ILE LEU ASN SER PRO THR VAL THR SER ILE LYS TRP SEQRES 15 B 667 TRP PRO GLY GLY LEU GLY LYS THR SER ASN HIS ALA ILE SEQRES 16 B 667 VAL LEU ALA GLN LEU ILE THR LYS GLY LYS CSO TYR GLY SEQRES 17 B 667 LEU HIS ALA PHE ILE VAL PRO ILE ARG GLU ILE GLY THR SEQRES 18 B 667 HIS LYS PRO LEU PRO GLY ILE THR VAL GLY ASP ILE GLY SEQRES 19 B 667 PRO LYS PHE GLY TYR ASP GLU ILE ASP ASN GLY TYR LEU SEQRES 20 B 667 LYS MET ASP ASN HIS ARG ILE PRO ARG GLU ASN MET LEU SEQRES 21 B 667 MET LYS TYR ALA GLN VAL LYS PRO ASP GLY THR TYR VAL SEQRES 22 B 667 LYS PRO LEU SER ASN LYS LEU THR TYR GLY THR MET VAL SEQRES 23 B 667 PHE VAL ARG SER PHE LEU VAL GLY GLU ALA ALA ARG ALA SEQRES 24 B 667 LEU SER LYS ALA CYS THR ILE ALA ILE ARG TYR SER ALA SEQRES 25 B 667 VAL ARG HIS GLN SER GLU ILE LYS PRO GLY GLU PRO GLU SEQRES 26 B 667 PRO GLN ILE LEU ASP PHE GLN THR GLN GLN TYR LYS LEU SEQRES 27 B 667 PHE PRO LEU LEU ALA THR ALA TYR ALA PHE GLN PHE VAL SEQRES 28 B 667 GLY ALA TYR MET LYS GLU THR TYR HIS ARG ILE ASN GLU SEQRES 29 B 667 GLY ILE GLY GLN GLY ASP LEU SER GLU LEU PRO GLU LEU SEQRES 30 B 667 HIS ALA LEU THR ALA GLY LEU LYS ALA PHE THR SER TRP SEQRES 31 B 667 THR ALA ASN THR GLY ILE GLU ALA CYS ARG MET ALA CYS SEQRES 32 B 667 GLY GLY HIS GLY TYR SER HIS CYS SER GLY LEU PRO ASN SEQRES 33 B 667 ILE TYR VAL ASN PHE THR PRO SER CYS THR PHE GLU GLY SEQRES 34 B 667 GLU ASN THR VAL MET MET LEU GLN THR ALA ARG PHE LEU SEQRES 35 B 667 MET LYS SER TYR ASP GLN VAL HIS SER GLY LYS LEU VAL SEQRES 36 B 667 CSO GLY MET VAL SER TYR LEU ASN ASP LEU PRO SER GLN SEQRES 37 B 667 ARG ILE GLN PRO GLN GLN VAL ALA VAL TRP PRO THR MET SEQRES 38 B 667 VAL ASP ILE ASN SER PRO GLU SER LEU THR GLU ALA TYR SEQRES 39 B 667 LYS LEU ARG ALA ALA ARG LEU VAL GLU ILE ALA ALA LYS SEQRES 40 B 667 ASN LEU GLN LYS GLU VAL ILE HIS ARG LYS SER LYS GLU SEQRES 41 B 667 VAL ALA TRP ASN LEU THR SER VAL ASP LEU VAL ARG ALA SEQRES 42 B 667 SER GLU ALA HIS CYS HIS TYR VAL VAL VAL LYS LEU PHE SEQRES 43 B 667 SER GLU LYS LEU LEU LYS ILE GLN ASP LYS ALA ILE GLN SEQRES 44 B 667 ALA VAL LEU ARG SER LEU CYS LEU LEU TYR SER LEU TYR SEQRES 45 B 667 GLY ILE SER GLN ASN ALA GLY ASP PHE LEU GLN GLY SER SEQRES 46 B 667 ILE MET THR GLU PRO GLN ILE THR GLN VAL ASN GLN ARG SEQRES 47 B 667 VAL LYS GLU LEU LEU THR LEU ILE ARG SER ASP ALA VAL SEQRES 48 B 667 ALA LEU VAL ASP ALA PHE ASP PHE GLN ASP VAL THR LEU SEQRES 49 B 667 GLY SER VAL LEU GLY ARG TYR ASP GLY ASN VAL TYR GLU SEQRES 50 B 667 ASN LEU PHE GLU TRP ALA LYS ASN SER PRO LEU ASN LYS SEQRES 51 B 667 ALA GLU VAL HIS GLU SER TYR LYS HIS LEU LYS SER LEU SEQRES 52 B 667 GLN SER LYS LEU MODRES 7Q84 CSO A 199 CYS MODIFIED RESIDUE MODRES 7Q84 CSO A 449 CYS MODIFIED RESIDUE MODRES 7Q84 CSO B 199 CYS MODIFIED RESIDUE MODRES 7Q84 CSO B 449 CYS MODIFIED RESIDUE HET CSO A 199 7 HET CSO A 449 7 HET CSO B 199 7 HET CSO B 449 7 HET PGE A 701 10 HET EDO A 702 4 HET EDO A 703 4 HET PEG A 704 7 HET EDO A 705 4 HET EDO A 706 4 HET GOL A 707 6 HET EDO A 708 4 HET EDO A 709 4 HET PGE B 701 10 HET EDO B 702 4 HET EDO B 703 4 HET EDO B 704 4 HET GOL B 705 6 HET EDO B 706 4 HET GOL B 707 6 HETNAM CSO S-HYDROXYCYSTEINE HETNAM PGE TRIETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSO 4(C3 H7 N O3 S) FORMUL 3 PGE 2(C6 H14 O4) FORMUL 4 EDO 10(C2 H6 O2) FORMUL 6 PEG C4 H10 O3 FORMUL 9 GOL 3(C3 H8 O3) FORMUL 19 HOH *492(H2 O) HELIX 1 AA1 ASN A 2 SER A 11 1 10 HELIX 2 AA2 ASN A 15 GLY A 25 1 11 HELIX 3 AA3 SER A 26 ASN A 42 1 17 HELIX 4 AA4 ASP A 43 GLN A 47 5 5 HELIX 5 AA5 ASP A 50 LEU A 54 5 5 HELIX 6 AA6 THR A 55 PHE A 77 1 23 HELIX 7 AA7 ASP A 81 ARG A 94 1 14 HELIX 8 AA8 LEU A 100 MET A 106 1 7 HELIX 9 AA9 MET A 106 ALA A 115 1 10 HELIX 10 AB1 THR A 116 ASN A 129 1 14 HELIX 11 AB2 HIS A 146 LEU A 150 5 5 HELIX 12 AB3 GLU A 250 MET A 252 5 3 HELIX 13 AB4 VAL A 279 ARG A 307 1 29 HELIX 14 AB5 GLN A 320 ASP A 323 5 4 HELIX 15 AB6 PHE A 324 ASN A 356 1 33 HELIX 16 AB7 GLU A 366 CYS A 396 1 31 HELIX 17 AB8 CYS A 396 SER A 402 1 7 HELIX 18 AB9 HIS A 403 SER A 405 5 3 HELIX 19 AC1 GLY A 406 THR A 415 1 10 HELIX 20 AC2 PRO A 416 THR A 419 5 4 HELIX 21 AC3 GLU A 423 SER A 444 1 22 HELIX 22 AC4 CSO A 449 LEU A 458 5 10 HELIX 23 AC5 SER A 479 LYS A 510 1 32 HELIX 24 AC6 SER A 511 LEU A 518 1 8 HELIX 25 AC7 THR A 519 LEU A 544 1 26 HELIX 26 AC8 ASP A 548 ASN A 570 1 23 HELIX 27 AC9 ALA A 571 GLN A 576 1 6 HELIX 28 AD1 GLY A 577 ILE A 579 5 3 HELIX 29 AD2 THR A 581 SER A 601 1 21 HELIX 30 AD3 ASP A 602 ALA A 609 1 8 HELIX 31 AD4 GLN A 613 GLY A 618 1 6 HELIX 32 AD5 ASN A 627 SER A 639 1 13 HELIX 33 AD6 PRO A 640 LYS A 643 5 4 HELIX 34 AD7 ASN B 2 SER B 11 1 10 HELIX 35 AD8 ASN B 15 GLY B 25 1 11 HELIX 36 AD9 SER B 26 ASN B 42 1 17 HELIX 37 AE1 ASP B 43 GLN B 47 5 5 HELIX 38 AE2 ASP B 50 LEU B 54 5 5 HELIX 39 AE3 THR B 55 PHE B 77 1 23 HELIX 40 AE4 ASP B 81 ARG B 94 1 14 HELIX 41 AE5 LEU B 100 MET B 106 1 7 HELIX 42 AE6 MET B 106 ALA B 115 1 10 HELIX 43 AE7 THR B 116 ASN B 129 1 14 HELIX 44 AE8 HIS B 146 LEU B 150 5 5 HELIX 45 AE9 GLU B 250 MET B 252 5 3 HELIX 46 AF1 VAL B 279 ARG B 307 1 29 HELIX 47 AF2 GLN B 320 ASP B 323 5 4 HELIX 48 AF3 PHE B 324 ASN B 356 1 33 HELIX 49 AF4 GLU B 366 CYS B 396 1 31 HELIX 50 AF5 GLY B 397 SER B 402 1 6 HELIX 51 AF6 HIS B 403 SER B 405 5 3 HELIX 52 AF7 GLY B 406 THR B 415 1 10 HELIX 53 AF8 PRO B 416 THR B 419 5 4 HELIX 54 AF9 GLU B 423 SER B 444 1 22 HELIX 55 AG1 CSO B 449 LEU B 458 5 10 HELIX 56 AG2 SER B 479 LYS B 510 1 32 HELIX 57 AG3 SER B 511 THR B 519 1 9 HELIX 58 AG4 THR B 519 LEU B 544 1 26 HELIX 59 AG5 ASP B 548 ASN B 570 1 23 HELIX 60 AG6 ASN B 570 GLN B 576 1 7 HELIX 61 AG7 GLY B 577 ILE B 579 5 3 HELIX 62 AG8 THR B 581 SER B 601 1 21 HELIX 63 AG9 ASP B 602 ALA B 609 1 8 HELIX 64 AH1 GLN B 613 GLY B 618 1 6 HELIX 65 AH2 ASN B 627 ASN B 638 1 12 HELIX 66 AH3 SER B 639 ALA B 644 5 6 HELIX 67 AH4 HIS B 647 LEU B 653 5 7 SHEET 1 AA1 3 GLY A 134 ALA A 137 0 SHEET 2 AA1 3 HIS A 186 THR A 195 1 O ILE A 188 N ALA A 137 SHEET 3 AA1 3 LYS A 198 PRO A 208 -1 O PHE A 205 N VAL A 189 SHEET 1 AA2 5 GLY A 134 ALA A 137 0 SHEET 2 AA2 5 HIS A 186 THR A 195 1 O ILE A 188 N ALA A 137 SHEET 3 AA2 5 THR A 153 ASP A 157 1 N TYR A 156 O ILE A 194 SHEET 4 AA2 5 GLU A 162 ASN A 166 -1 O ILE A 164 N THR A 155 SHEET 5 AA2 5 HIS A 245 PRO A 248 -1 O HIS A 245 N LEU A 165 SHEET 1 AA3 3 LYS A 174 TRP A 175 0 SHEET 2 AA3 3 GLY A 238 MET A 242 -1 O LEU A 240 N LYS A 174 SHEET 3 AA3 3 ILE A 221 ASP A 225 -1 N THR A 222 O LYS A 241 SHEET 1 AA4 2 GLN A 258 VAL A 259 0 SHEET 2 AA4 2 TYR A 265 VAL A 266 -1 O VAL A 266 N GLN A 258 SHEET 1 AA5 3 GLY B 134 ALA B 137 0 SHEET 2 AA5 3 HIS B 186 THR B 195 1 O ILE B 188 N ALA B 137 SHEET 3 AA5 3 LYS B 198 PRO B 208 -1 O TYR B 200 N LEU B 193 SHEET 1 AA6 5 GLY B 134 ALA B 137 0 SHEET 2 AA6 5 HIS B 186 THR B 195 1 O ILE B 188 N ALA B 137 SHEET 3 AA6 5 THR B 153 ASP B 157 1 N TYR B 156 O ILE B 194 SHEET 4 AA6 5 GLU B 162 ASN B 166 -1 O GLU B 162 N ASP B 157 SHEET 5 AA6 5 HIS B 245 PRO B 248 -1 O HIS B 245 N LEU B 165 SHEET 1 AA7 3 LYS B 174 TRP B 175 0 SHEET 2 AA7 3 GLY B 238 MET B 242 -1 O LEU B 240 N LYS B 174 SHEET 3 AA7 3 ILE B 221 ASP B 225 -1 N THR B 222 O LYS B 241 SHEET 1 AA8 2 GLN B 258 VAL B 259 0 SHEET 2 AA8 2 TYR B 265 VAL B 266 -1 O VAL B 266 N GLN B 258 LINK C LYS A 198 N CSO A 199 1555 1555 1.34 LINK C CSO A 199 N TYR A 200 1555 1555 1.35 LINK C VAL A 448 N CSO A 449 1555 1555 1.33 LINK C CSO A 449 N GLY A 450 1555 1555 1.35 LINK C LYS B 198 N CSO B 199 1555 1555 1.33 LINK C CSO B 199 N TYR B 200 1555 1555 1.35 LINK C VAL B 448 N CSO B 449 1555 1555 1.33 LINK C CSO B 449 N GLY B 450 1555 1555 1.35 CRYST1 87.871 133.222 139.564 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011380 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007506 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007165 0.00000