HEADER HYDROLASE 10-NOV-21 7Q87 TITLE CARBOXYPEPTIDASE T WITH (S)-3-PHENYLLACTIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBOXYPEPTIDASE T; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.17.18; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOACTINOMYCES VULGARIS; SOURCE 3 ORGANISM_TAXID: 2026; SOURCE 4 GENE: CPT; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.I.TIMOFEEV,V.K.AKPAROV,M.B.SHEVTSOV,I.P.KURANOVA REVDAT 2 31-JAN-24 7Q87 1 REMARK REVDAT 1 26-JAN-22 7Q87 0 JRNL AUTH V.I.TIMOFEEV,V.K.AKPAROV,M.B.SHEVTSOV,I.P.KURANOVA JRNL TITL CARBOXYPEPTIDASE T WITH (S)-3-PHENYLLACTIC ACID JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 75180 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.132 REMARK 3 R VALUE (WORKING SET) : 0.131 REMARK 3 FREE R VALUE : 0.145 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3928 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5464 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1450 REMARK 3 BIN FREE R VALUE SET COUNT : 274 REMARK 3 BIN FREE R VALUE : 0.1490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2581 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 366 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.051 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.052 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.030 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.915 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2773 ; 0.019 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2397 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3780 ; 2.162 ; 1.674 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5542 ; 1.682 ; 1.597 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 340 ; 7.218 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;29.507 ;23.179 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 423 ;11.745 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;18.388 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 355 ; 0.138 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3261 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 693 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7Q87 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1292119171. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.7749 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79136 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 18.17 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 0.1370 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3QNV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SA 1.4%, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.06600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.06600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.06600 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 52.06600 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 52.06600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 52.06600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 605 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 674 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 837 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 764 O HOH A 839 1.73 REMARK 500 O HOH A 822 O HOH A 844 1.80 REMARK 500 NE2 GLN A 250 O HOH A 501 1.89 REMARK 500 O HOH A 602 O HOH A 681 2.11 REMARK 500 NH2 ARG A 171 O HOH A 502 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 687 O HOH A 687 10555 1.92 REMARK 500 O HOH A 824 O HOH A 824 9555 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 252 CA SER A 252 CB -0.103 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 95 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 169 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 TYR A 216 CB - CG - CD2 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 72 56.61 -91.42 REMARK 500 ASN A 131 -168.01 -77.44 REMARK 500 SER A 207 -16.16 155.80 REMARK 500 GLU A 208 60.36 66.10 REMARK 500 CYS A 314 76.33 58.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS A 155 CYS A 156 -145.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLN A 250 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN A 58 10.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 407 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 5 O REMARK 620 2 ASP A 291 OD1 85.9 REMARK 620 3 GLU A 292 OE1 156.2 84.5 REMARK 620 4 GLU A 292 OE2 142.1 74.8 54.6 REMARK 620 5 HOH A 601 O 63.7 72.8 92.6 135.6 REMARK 620 6 HOH A 632 O 74.6 91.0 127.2 73.4 135.8 REMARK 620 7 HOH A 770 O 80.3 126.2 87.9 137.3 54.4 133.2 REMARK 620 8 HOH A 788 O 104.3 159.7 91.9 86.8 127.4 75.3 73.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 406 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 7 O REMARK 620 2 TYR A 9 O 80.7 REMARK 620 3 GLU A 14 OE1 163.7 83.0 REMARK 620 4 GLU A 14 OE2 145.5 132.7 50.7 REMARK 620 5 HOH A 672 O 74.8 155.1 121.5 71.0 REMARK 620 6 HOH A 722 O 97.4 93.3 82.4 89.6 94.5 REMARK 620 7 HOH A 775 O 93.8 81.6 84.9 85.1 95.2 166.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 50 OG REMARK 620 2 ASP A 51 O 88.4 REMARK 620 3 ASP A 51 OD1 98.1 76.7 REMARK 620 4 GLU A 57 OE1 173.1 94.6 88.7 REMARK 620 5 GLU A 59 OE1 83.0 165.7 115.7 92.9 REMARK 620 6 GLU A 59 OE2 104.3 146.9 71.3 76.5 47.1 REMARK 620 7 HOH A 581 O 85.0 77.5 153.9 89.5 90.4 133.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 408 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 51 OD1 REMARK 620 2 ASP A 51 OD2 52.2 REMARK 620 3 GLU A 59 OE2 74.1 125.7 REMARK 620 4 ASN A 101 O 84.1 81.9 85.7 REMARK 620 5 HOH A 551 O 97.9 87.8 108.9 165.3 REMARK 620 6 HOH A 695 O 123.3 71.4 157.4 82.3 84.4 REMARK 620 7 HOH A 749 O 150.5 151.9 77.8 85.4 99.2 82.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 56 OD1 REMARK 620 2 GLU A 57 O 92.6 REMARK 620 3 GLU A 61 OE2 96.8 168.7 REMARK 620 4 GLU A 104 OE1 90.5 86.2 87.5 REMARK 620 5 HOH A 534 O 156.9 87.0 86.8 112.6 REMARK 620 6 HOH A 675 O 78.8 92.5 95.5 169.1 78.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 69 ND1 REMARK 620 2 GLU A 72 OE1 119.0 REMARK 620 3 GLU A 72 OE2 94.2 59.4 REMARK 620 4 HIS A 204 ND1 99.6 94.4 153.8 REMARK 620 5 HFA A 403 O 79.7 137.8 83.3 121.0 REMARK 620 6 HFA A 403 OXT 131.1 104.3 88.7 98.5 52.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 409 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 218 O REMARK 620 2 ASP A 220 OD1 93.6 REMARK 620 3 GLN A 250 OE1 88.4 87.3 REMARK 620 4 HOH A 506 O 90.8 168.9 82.7 REMARK 620 5 HOH A 591 O 171.9 92.2 97.6 84.6 REMARK 620 6 HOH A 746 O 80.6 74.6 158.0 116.2 95.5 REMARK 620 N 1 2 3 4 5 DBREF 7Q87 A 1 323 UNP P29068 CBPT_THEVU 99 421 SEQRES 1 A 323 ASP PHE PRO SER TYR ASP SER GLY TYR HIS ASN TYR ASN SEQRES 2 A 323 GLU MET VAL ASN LYS ILE ASN THR VAL ALA SER ASN TYR SEQRES 3 A 323 PRO ASN ILE VAL LYS LYS PHE SER ILE GLY LYS SER TYR SEQRES 4 A 323 GLU GLY ARG GLU LEU TRP ALA VAL LYS ILE SER ASP ASN SEQRES 5 A 323 VAL GLY THR ASP GLU ASN GLU PRO GLU VAL LEU TYR THR SEQRES 6 A 323 ALA LEU HIS HIS ALA ARG GLU HIS LEU THR VAL GLU MET SEQRES 7 A 323 ALA LEU TYR THR LEU ASP LEU PHE THR GLN ASN TYR ASN SEQRES 8 A 323 LEU ASP SER ARG ILE THR ASN LEU VAL ASN ASN ARG GLU SEQRES 9 A 323 ILE TYR ILE VAL PHE ASN ILE ASN PRO ASP GLY GLY GLU SEQRES 10 A 323 TYR ASP ILE SER SER GLY SER TYR LYS SER TRP ARG LYS SEQRES 11 A 323 ASN ARG GLN PRO ASN SER GLY SER SER TYR VAL GLY THR SEQRES 12 A 323 ASP LEU ASN ARG ASN TYR GLY TYR LYS TRP GLY CYS CYS SEQRES 13 A 323 GLY GLY SER SER GLY SER PRO SER SER GLU THR TYR ARG SEQRES 14 A 323 GLY ARG SER ALA PHE SER ALA PRO GLU THR ALA ALA MET SEQRES 15 A 323 ARG ASP PHE ILE ASN SER ARG VAL VAL GLY GLY LYS GLN SEQRES 16 A 323 GLN ILE LYS THR LEU ILE THR PHE HIS THR TYR SER GLU SEQRES 17 A 323 LEU ILE LEU TYR PRO TYR GLY TYR THR TYR THR ASP VAL SEQRES 18 A 323 PRO SER ASP MET THR GLN ASP ASP PHE ASN VAL PHE LYS SEQRES 19 A 323 THR MET ALA ASN THR MET ALA GLN THR ASN GLY TYR THR SEQRES 20 A 323 PRO GLN GLN ALA SER ASP LEU TYR ILE THR ASP GLY ASP SEQRES 21 A 323 MET THR ASP TRP ALA TYR GLY GLN HIS LYS ILE PHE ALA SEQRES 22 A 323 PHE THR PHE GLU MET TYR PRO THR SER TYR ASN PRO GLY SEQRES 23 A 323 PHE TYR PRO PRO ASP GLU VAL ILE GLY ARG GLU THR SER SEQRES 24 A 323 ARG ASN LYS GLU ALA VAL LEU TYR VAL ALA GLU LYS ALA SEQRES 25 A 323 ASP CYS PRO TYR SER VAL ILE GLY LYS SER CYS HET ZN A 401 1 HET HFA A 402 36 HET HFA A 403 12 HET CA A 404 1 HET CA A 405 1 HET CA A 406 1 HET CA A 407 1 HET CA A 408 1 HET CA A 409 1 HET SO4 A 410 5 HETNAM ZN ZINC ION HETNAM HFA ALPHA-HYDROXY-BETA-PHENYL-PROPIONIC ACID HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION FORMUL 2 ZN ZN 2+ FORMUL 3 HFA 2(C9 H10 O3) FORMUL 5 CA 6(CA 2+) FORMUL 11 SO4 O4 S 2- FORMUL 12 HOH *366(H2 O) HELIX 1 AA1 PRO A 3 SER A 7 5 5 HELIX 2 AA2 ASN A 11 TYR A 26 1 16 HELIX 3 AA3 HIS A 73 ASN A 89 1 17 HELIX 4 AA4 ASP A 93 ASN A 101 1 9 HELIX 5 AA5 ASN A 112 ASP A 119 1 8 HELIX 6 AA6 ASP A 144 ASN A 148 5 5 HELIX 7 AA7 ALA A 176 ARG A 189 1 14 HELIX 8 AA8 THR A 226 GLY A 245 1 20 HELIX 9 AA9 ALA A 251 TYR A 255 1 5 HELIX 10 AB1 ASP A 260 LYS A 270 1 11 HELIX 11 AB2 PRO A 290 GLU A 292 5 3 HELIX 12 AB3 VAL A 293 ARG A 300 1 8 HELIX 13 AB4 ASN A 301 ALA A 312 1 12 HELIX 14 AB5 ASP A 313 ILE A 319 5 7 SHEET 1 AA1 8 VAL A 30 LYS A 37 0 SHEET 2 AA1 8 GLU A 43 ILE A 49 -1 O LEU A 44 N GLY A 36 SHEET 3 AA1 8 GLU A 104 VAL A 108 -1 O ILE A 105 N ILE A 49 SHEET 4 AA1 8 GLU A 61 ALA A 66 1 N TYR A 64 O VAL A 108 SHEET 5 AA1 8 ILE A 197 HIS A 204 1 O PHE A 203 N THR A 65 SHEET 6 AA1 8 PHE A 272 GLU A 277 1 O PHE A 276 N HIS A 204 SHEET 7 AA1 8 LEU A 209 TYR A 212 -1 N LEU A 211 O THR A 275 SHEET 8 AA1 8 THR A 247 GLN A 250 1 O GLN A 249 N ILE A 210 SHEET 1 AA2 2 VAL A 190 VAL A 191 0 SHEET 2 AA2 2 LYS A 194 GLN A 195 -1 O LYS A 194 N VAL A 191 SSBOND 1 CYS A 155 CYS A 156 1555 1555 2.06 SSBOND 2 CYS A 314 CYS A 323 1555 1555 2.10 LINK O TYR A 5 CA CA A 407 1555 1555 2.36 LINK O SER A 7 CA CA A 406 1555 1555 2.32 LINK O TYR A 9 CA CA A 406 1555 1555 2.36 LINK OE1 GLU A 14 CA CA A 406 1555 1555 2.49 LINK OE2 GLU A 14 CA CA A 406 1555 1555 2.64 LINK OG SER A 50 CA CA A 404 1555 1555 2.38 LINK O ASP A 51 CA CA A 404 1555 1555 2.33 LINK OD1 ASP A 51 CA CA A 404 1555 1555 2.25 LINK OD1 ASP A 51 CA CA A 408 1555 1555 2.66 LINK OD2 ASP A 51 CA CA A 408 1555 1555 2.50 LINK OD1 ASP A 56 CA CA A 405 1555 1555 2.33 LINK OE1 GLU A 57 CA CA A 404 1555 1555 2.32 LINK O GLU A 57 CA CA A 405 1555 1555 2.39 LINK OE1 GLU A 59 CA CA A 404 1555 1555 2.39 LINK OE2 GLU A 59 CA CA A 404 1555 1555 2.87 LINK OE2 GLU A 59 CA CA A 408 1555 1555 2.35 LINK OE2 GLU A 61 CA CA A 405 1555 1555 2.38 LINK ND1 HIS A 69 ZN ZN A 401 1555 1555 2.04 LINK OE1 GLU A 72 ZN ZN A 401 1555 1555 2.23 LINK OE2 GLU A 72 ZN ZN A 401 1555 1555 2.31 LINK O ASN A 101 CA CA A 408 1555 1555 2.38 LINK OE1 GLU A 104 CA CA A 405 1555 1555 2.22 LINK ND1 HIS A 204 ZN ZN A 401 1555 1555 2.05 LINK O TYR A 218 CA CA A 409 1555 1555 2.61 LINK OD1 ASP A 220 CA CA A 409 1555 1555 2.28 LINK OE1 GLN A 250 CA CA A 409 1555 1555 2.25 LINK OD1 ASP A 291 CA CA A 407 1555 1555 2.41 LINK OE1 GLU A 292 CA CA A 407 1555 1555 2.40 LINK OE2 GLU A 292 CA CA A 407 1555 1555 2.55 LINK ZN ZN A 401 O HFA A 403 1555 1555 2.25 LINK ZN ZN A 401 OXT HFA A 403 1555 1555 2.23 LINK CA CA A 404 O HOH A 581 1555 1555 2.40 LINK CA CA A 405 O HOH A 534 1555 1555 2.26 LINK CA CA A 405 O HOH A 675 1555 1555 2.42 LINK CA CA A 406 O HOH A 672 1555 1555 2.34 LINK CA CA A 406 O HOH A 722 1555 1555 2.23 LINK CA CA A 406 O HOH A 775 1555 1555 2.48 LINK CA CA A 407 O HOH A 601 1555 1555 3.13 LINK CA CA A 407 O HOH A 632 1555 1555 2.50 LINK CA CA A 407 O HOH A 770 1555 1555 2.49 LINK CA CA A 407 O HOH A 788 1555 1555 2.41 LINK CA CA A 408 O HOH A 551 1555 1555 2.43 LINK CA CA A 408 O HOH A 695 1555 1555 2.42 LINK CA CA A 408 O HOH A 749 1555 1555 2.38 LINK CA CA A 409 O HOH A 506 1555 1555 2.44 LINK CA CA A 409 O HOH A 591 1555 1555 2.44 LINK CA CA A 409 O HOH A 746 1555 1555 2.60 CISPEP 1 THR A 205 TYR A 206 0 -3.72 CISPEP 2 PRO A 213 TYR A 214 0 -5.31 CISPEP 3 TYR A 279 PRO A 280 0 0.76 CISPEP 4 ASN A 284 PRO A 285 0 13.88 CRYST1 157.328 157.328 104.132 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006356 0.003670 0.000000 0.00000 SCALE2 0.000000 0.007339 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009603 0.00000