HEADER OXIDOREDUCTASE 19-NOV-21 7QBP TITLE CRYSTAL STRUCTURE OF R2-LIKE LIGAND-BINDING OXIDASE FROM TITLE 2 SACCHAROPOLYSPORA ERYTHRAEA COMPND MOL_ID: 1; COMPND 2 MOLECULE: R2-LIKE LIGAND BINDING OXIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RIBONUCLEOTIDE REDUCTASE R2 SUBUNIT HOMOLOG,RIBONUCLEOTIDE COMPND 5 REDUCTASE SMALL SUBUNIT HOMOLOG; COMPND 6 EC: 1.-.-.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROPOLYSPORA ERYTHRAEA (STRAIN ATCC 11635 SOURCE 3 / DSM 40517 / JCM 4748 / NBRC 13426 / NCIMB 8594 / NRRL 2338); SOURCE 4 ORGANISM_TAXID: 405948; SOURCE 5 STRAIN: ATCC 11635 / DSM 40517 / JCM 4748 / NBRC 13426 / NCIMB 8594 SOURCE 6 / NRRL 2338; SOURCE 7 GENE: SACE_0591; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS R2LOX, R2-LIKE LIGAND-BINDING OXIDASE, MN/FE COFACTOR, RIBONUCLEOTIDE KEYWDS 2 REDUCTASE R2 SUBUNIT FOLD, METALLOPROTEIN, FERRITIN-LIKE KEYWDS 3 SUPERFAMILY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR V.SRINIVAS,R.DIAMANTI,H.LEBRETTE,M.HOGBOM REVDAT 3 31-JAN-24 7QBP 1 REMARK REVDAT 2 06-JUL-22 7QBP 1 JRNL REVDAT 1 06-APR-22 7QBP 0 JRNL AUTH R.DIAMANTI,V.SRINIVAS,A.I.JOHANSSON,A.NORDSTROM,J.J.GRIESE, JRNL AUTH 2 H.LEBRETTE,M.HOGBOM JRNL TITL COMPARATIVE STRUCTURAL ANALYSIS PROVIDES NEW INSIGHTS INTO JRNL TITL 2 THE FUNCTION OF R2-LIKE LIGAND-BINDING OXIDASE. JRNL REF FEBS LETT. V. 596 1600 2022 JRNL REFN ISSN 0014-5793 JRNL PMID 35175627 JRNL DOI 10.1002/1873-3468.14319 REMARK 2 REMARK 2 RESOLUTION. 1.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 68755 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3438 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0500 - 4.0300 1.00 2855 151 0.1604 0.1428 REMARK 3 2 4.0300 - 3.2000 1.00 2708 142 0.1474 0.1765 REMARK 3 3 3.2000 - 2.8000 1.00 2652 140 0.1613 0.1562 REMARK 3 4 2.8000 - 2.5400 1.00 2662 140 0.1421 0.1696 REMARK 3 5 2.5400 - 2.3600 1.00 2623 138 0.1344 0.1503 REMARK 3 6 2.3600 - 2.2200 1.00 2628 138 0.1325 0.1413 REMARK 3 7 2.2200 - 2.1100 1.00 2620 138 0.1279 0.1583 REMARK 3 8 2.1100 - 2.0200 1.00 2632 139 0.1344 0.1551 REMARK 3 9 2.0200 - 1.9400 1.00 2588 136 0.1465 0.1605 REMARK 3 10 1.9400 - 1.8700 1.00 2611 137 0.1563 0.1990 REMARK 3 11 1.8700 - 1.8100 1.00 2591 137 0.1469 0.1636 REMARK 3 12 1.8100 - 1.7600 1.00 2612 137 0.1341 0.1361 REMARK 3 13 1.7600 - 1.7100 1.00 2594 137 0.1391 0.1850 REMARK 3 14 1.7100 - 1.6700 1.00 2597 136 0.1450 0.1750 REMARK 3 15 1.6700 - 1.6300 1.00 2585 136 0.1522 0.1742 REMARK 3 16 1.6300 - 1.6000 1.00 2585 136 0.1601 0.1908 REMARK 3 17 1.6000 - 1.5700 1.00 2594 137 0.1777 0.1939 REMARK 3 18 1.5700 - 1.5400 1.00 2541 134 0.1892 0.2159 REMARK 3 19 1.5400 - 1.5100 1.00 2617 138 0.1764 0.1968 REMARK 3 20 1.5100 - 1.4900 1.00 2590 136 0.1719 0.2044 REMARK 3 21 1.4900 - 1.4600 1.00 2562 135 0.1732 0.2023 REMARK 3 22 1.4600 - 1.4400 1.00 2587 136 0.1876 0.2302 REMARK 3 23 1.4400 - 1.4200 1.00 2578 135 0.2146 0.2625 REMARK 3 24 1.4200 - 1.4000 1.00 2546 134 0.2265 0.2832 REMARK 3 25 1.4000 - 1.3800 0.98 2559 135 0.2724 0.2925 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.143 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.191 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 2449 REMARK 3 ANGLE : 1.383 3328 REMARK 3 CHIRALITY : 0.105 344 REMARK 3 PLANARITY : 0.016 447 REMARK 3 DIHEDRAL : 14.360 912 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QBP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1292119291. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68755 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.380 REMARK 200 RESOLUTION RANGE LOW (A) : 47.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 26.10 REMARK 200 R MERGE (I) : 0.06269 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.78200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.790 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3EE4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM LITHIUM SULFATE, 100 MM SODIUM REMARK 280 ACETATE PH 4.6, AND 50 % (W/V) PEG 400, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.78700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.58650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.58650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.18050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.58650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.58650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 15.39350 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.58650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.58650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 46.18050 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.58650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.58650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 15.39350 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 30.78700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 597 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 SER A -2 REMARK 465 GLN A -1 REMARK 465 ASP A 0 REMARK 465 GLN A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 297 REMARK 465 SER A 298 REMARK 465 PRO A 299 REMARK 465 GLU A 300 REMARK 465 GLN A 301 REMARK 465 LEU A 302 REMARK 465 GLU A 303 REMARK 465 ASP A 304 REMARK 465 GLN A 305 REMARK 465 PHE A 306 REMARK 465 GLY A 307 REMARK 465 VAL A 308 REMARK 465 GLU A 309 REMARK 465 ASP A 310 REMARK 465 ALA A 311 REMARK 465 ALA A 312 REMARK 465 ALA A 313 REMARK 465 LEU A 314 REMARK 465 GLU A 315 REMARK 465 LYS A 316 REMARK 465 ALA A 317 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB VAL A 76 OH TYR A 167 1.51 REMARK 500 CB VAL A 76 OH TYR A 167 1.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 142 -67.70 -126.69 REMARK 500 ASP A 154 84.39 -153.65 REMARK 500 PRO A 155 41.73 -84.33 REMARK 500 VAL A 170 -62.73 -107.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 167 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN3 A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 73 OE1 REMARK 620 2 GLU A 106 OE1 86.5 REMARK 620 3 HIS A 109 ND1 95.6 94.8 REMARK 620 4 PLM A 403 O1 81.5 104.8 159.9 REMARK 620 5 HOH A 502 O 87.9 174.2 87.3 72.7 REMARK 620 6 HOH A 544 O 172.4 95.3 91.6 91.0 90.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 106 OE2 REMARK 620 2 GLU A 172 OE2 97.3 REMARK 620 3 GLU A 207 OE1 177.1 83.9 REMARK 620 4 HIS A 210 ND1 85.9 93.6 91.3 REMARK 620 5 PLM A 403 O2 85.3 87.7 97.5 171.2 REMARK 620 6 HOH A 544 O 96.1 166.0 83.0 91.4 89.3 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7QBK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A SECOND HOMOLOG OF R2-LIKE LIGAND-BINDING REMARK 900 OXIDASE IN SULFOLOBUS ACIDOCALDARIUS DBREF 7QBP A 2 317 UNP A4F7B2 RIR2H_SACEN 2 317 SEQADV 7QBP MET A -12 UNP A4F7B2 INITIATING METHIONINE SEQADV 7QBP GLY A -11 UNP A4F7B2 EXPRESSION TAG SEQADV 7QBP SER A -10 UNP A4F7B2 EXPRESSION TAG SEQADV 7QBP SER A -9 UNP A4F7B2 EXPRESSION TAG SEQADV 7QBP HIS A -8 UNP A4F7B2 EXPRESSION TAG SEQADV 7QBP HIS A -7 UNP A4F7B2 EXPRESSION TAG SEQADV 7QBP HIS A -6 UNP A4F7B2 EXPRESSION TAG SEQADV 7QBP HIS A -5 UNP A4F7B2 EXPRESSION TAG SEQADV 7QBP HIS A -4 UNP A4F7B2 EXPRESSION TAG SEQADV 7QBP HIS A -3 UNP A4F7B2 EXPRESSION TAG SEQADV 7QBP SER A -2 UNP A4F7B2 EXPRESSION TAG SEQADV 7QBP GLN A -1 UNP A4F7B2 EXPRESSION TAG SEQADV 7QBP ASP A 0 UNP A4F7B2 EXPRESSION TAG SEQADV 7QBP GLN A 1 UNP A4F7B2 EXPRESSION TAG SEQRES 1 A 330 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 330 GLN THR SER THR ALA THR PHE ARG GLU ASP PHE HIS SER SEQRES 3 A 330 LEU ARG ALA GLY GLY LEU ASN TRP ASP SER LEU PRO LEU SEQRES 4 A 330 ARG LEU PHE GLY LYS GLY ASN ALA LYS PHE TRP ASP PRO SEQRES 5 A 330 ALA ASP ILE ASP PHE THR ARG ASP ALA GLU ASP TRP GLN SEQRES 6 A 330 GLY LEU THR GLU GLU GLU ARG ARG SER VAL ALA MET LEU SEQRES 7 A 330 CYS SER GLN PHE ILE ALA GLY GLU GLU ALA VAL THR GLN SEQRES 8 A 330 ASP LEU GLN PRO PHE MET ALA ALA MET ALA ALA GLU GLY SEQRES 9 A 330 ARG PHE GLY ASP GLU MET TYR LEU THR GLN PHE CYS PHE SEQRES 10 A 330 GLU GLU ALA LYS HIS THR GLN VAL PHE ARG LEU TRP MET SEQRES 11 A 330 ASP ALA VAL GLY LEU THR GLY ASP LEU HIS SER HIS VAL SEQRES 12 A 330 ALA GLU ASN PRO GLY TYR ARG ALA ILE PHE TYR GLU GLU SEQRES 13 A 330 LEU PRO ARG SER LEU ASN ALA LEU HIS ASP ASP PRO SER SEQRES 14 A 330 PRO ALA ASN GLN VAL ARG ALA SER VAL THR TYR ASN HIS SEQRES 15 A 330 VAL VAL GLU GLY THR LEU ALA LEU THR GLY TYR PHE ALA SEQRES 16 A 330 TRP GLN LYS ILE CYS ARG SER ARG GLY ILE LEU PRO GLY SEQRES 17 A 330 MET GLN GLU VAL VAL ARG ARG ILE GLY ASP ASP GLU ARG SEQRES 18 A 330 ARG HIS MET ALA TRP GLY THR PHE THR CYS ARG ARG HIS SEQRES 19 A 330 VAL ALA ALA ASP GLU SER ASN TRP ASP VAL VAL GLN GLU SEQRES 20 A 330 GLN MET GLN HIS LEU LEU PRO LEU ALA VAL THR GLN ILE SEQRES 21 A 330 GLN TRP ARG PRO GLU ASP ALA PRO GLU GLU THR PRO PHE SEQRES 22 A 330 ARG LEU ASP ILE ASP GLU LEU ALA ALA TYR ALA SER ASP SEQRES 23 A 330 ARG ALA GLY ARG ARG LEU GLY ALA ILE SER ALA ALA ARG SEQRES 24 A 330 GLY VAL PRO VAL GLU GLN ILE ASP VAL ASP ALA SER PRO SEQRES 25 A 330 GLU GLN LEU GLU ASP GLN PHE GLY VAL GLU ASP ALA ALA SEQRES 26 A 330 ALA LEU GLU LYS ALA HET MN3 A 401 1 HET FE A 402 1 HET PLM A 403 49 HET SO4 A 404 5 HETNAM MN3 MANGANESE (III) ION HETNAM FE FE (III) ION HETNAM PLM PALMITIC ACID HETNAM SO4 SULFATE ION FORMUL 2 MN3 MN 3+ FORMUL 3 FE FE 3+ FORMUL 4 PLM C16 H32 O2 FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *177(H2 O) HELIX 1 AA1 PHE A 11 ARG A 15 5 5 HELIX 2 AA2 SER A 23 LYS A 35 1 13 HELIX 3 AA3 ASP A 38 ILE A 42 5 5 HELIX 4 AA4 PHE A 44 LEU A 54 1 11 HELIX 5 AA5 THR A 55 LEU A 80 1 26 HELIX 6 AA6 LEU A 80 GLY A 91 1 12 HELIX 7 AA7 ARG A 92 GLY A 121 1 30 HELIX 8 AA8 HIS A 127 GLU A 132 1 6 HELIX 9 AA9 ASN A 133 GLU A 142 1 10 HELIX 10 AB1 GLU A 142 ALA A 150 1 9 HELIX 11 AB2 SER A 156 ASN A 168 1 13 HELIX 12 AB3 THR A 174 SER A 189 1 16 HELIX 13 AB4 LEU A 193 ASP A 225 1 33 HELIX 14 AB5 GLU A 226 TRP A 249 1 24 HELIX 15 AB6 THR A 258 LEU A 262 5 5 HELIX 16 AB7 ASP A 263 ALA A 284 1 22 HELIX 17 AB8 PRO A 289 ASP A 294 1 6 LINK OE1 GLU A 73 MN MN3 A 401 1555 1555 2.02 LINK OE1 GLU A 106 MN MN3 A 401 1555 1555 2.06 LINK OE2 GLU A 106 FE FE A 402 1555 1555 2.01 LINK ND1 HIS A 109 MN MN3 A 401 1555 1555 2.21 LINK OE2 GLU A 172 FE FE A 402 1555 1555 1.97 LINK OE1 GLU A 207 FE FE A 402 1555 1555 2.11 LINK ND1 HIS A 210 FE FE A 402 1555 1555 2.26 LINK MN MN3 A 401 O1 PLM A 403 1555 1555 2.02 LINK MN MN3 A 401 O HOH A 502 1555 1555 2.38 LINK MN MN3 A 401 O HOH A 544 1555 1555 2.09 LINK FE FE A 402 O2 PLM A 403 1555 1555 2.17 LINK FE FE A 402 O HOH A 544 1555 1555 1.99 CRYST1 103.173 103.173 61.574 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009692 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009692 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016241 0.00000