HEADER NUCLEAR PROTEIN 23-NOV-21 7QCE TITLE CRYSTAL STRUCTURE OF AN ATYPICAL PHD FINGER OF VIN3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIN3 (PROTEIN VERNALIZATION INSENSITIVE 3); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHOENIX DACTYLIFERA; SOURCE 3 ORGANISM_TAXID: 42345; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS PHD FINGER, FOUR-HELIX BUNDLE, HISTONE H3 TAIL BINDING, POLYCOMB KEYWDS 2 SILENCING, PLANT VERNALISATION, VIN3, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.FRANCO-ECHEVARRIA,M.FIEDLER,C.DEAN,M.BIENZ REVDAT 1 16-NOV-22 7QCE 0 JRNL AUTH E.FRANCO-ECHEVARRIA,T.J.RUTHERFORD,M.FIEDLER,C.DEAN,M.BIENZ JRNL TITL PLANT VERNALIZATION PROTEINS CONTAIN UNUSUAL PHD JRNL TITL 2 SUPERDOMAINS WITHOUT HISTONE H3 BINDING ACTIVITY. JRNL REF J.BIOL.CHEM. V. 298 02540 2022 JRNL REFN ESSN 1083-351X JRNL PMID 36174674 JRNL DOI 10.1016/J.JBC.2022.102540 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 25824 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1440 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1877 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2630 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 52 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.12000 REMARK 3 B22 (A**2) : -1.12000 REMARK 3 B33 (A**2) : 3.63000 REMARK 3 B12 (A**2) : -0.56000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.209 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.183 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.446 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2705 ; 0.005 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 2618 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3658 ; 1.286 ; 1.905 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6061 ; 0.990 ; 2.755 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 338 ; 4.994 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;33.184 ;22.586 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 511 ;12.328 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;11.270 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 409 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2955 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 565 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1361 ; 7.660 ; 3.104 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1360 ; 7.668 ; 3.102 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1696 ; 7.965 ; 4.643 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1697 ; 7.965 ; 4.645 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1344 ;12.045 ; 4.104 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1345 ;12.043 ; 4.105 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1963 ;14.008 ; 5.667 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2963 ;14.567 ;38.122 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2959 ;14.578 ;38.064 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 135 A 321 REMARK 3 ORIGIN FOR THE GROUP (A): -0.7900 16.9190 -27.6970 REMARK 3 T TENSOR REMARK 3 T11: 0.1491 T22: 0.2665 REMARK 3 T33: 0.0329 T12: -0.0003 REMARK 3 T13: 0.0051 T23: 0.0829 REMARK 3 L TENSOR REMARK 3 L11: 4.2409 L22: 1.6133 REMARK 3 L33: 1.4951 L12: -0.6924 REMARK 3 L13: 0.6069 L23: -0.3202 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: 0.1197 S13: 0.1711 REMARK 3 S21: 0.0982 S22: 0.0348 S23: 0.0272 REMARK 3 S31: -0.0108 S32: 0.0311 S33: -0.0265 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 156 B 320 REMARK 3 ORIGIN FOR THE GROUP (A): 27.2620 4.9350 -12.3820 REMARK 3 T TENSOR REMARK 3 T11: 0.1353 T22: 0.2268 REMARK 3 T33: 0.0150 T12: 0.0195 REMARK 3 T13: -0.0067 T23: 0.0532 REMARK 3 L TENSOR REMARK 3 L11: 3.3228 L22: 2.2383 REMARK 3 L33: 2.3734 L12: 1.1501 REMARK 3 L13: 0.5489 L23: -0.5182 REMARK 3 S TENSOR REMARK 3 S11: 0.0367 S12: -0.0978 S13: -0.0375 REMARK 3 S21: 0.1424 S22: 0.0141 S23: 0.0286 REMARK 3 S31: -0.0419 S32: -0.0110 S33: -0.0508 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.30 REMARK 3 ION PROBE RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 7QCE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1292119300. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27349 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.60 REMARK 200 R MERGE (I) : 0.13500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.06M MORPHEUS DIVALENTS, 1.1M REMARK 280 MORPHEUS BUFFER SYSTEM PH 6.5, 10% PEG 20K, 20% PEG 500 MME, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.13167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 150.26333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 150.26333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 75.13167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 527 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 118 REMARK 465 PRO A 119 REMARK 465 ASP A 120 REMARK 465 SER A 121 REMARK 465 MET A 122 REMARK 465 PRO A 123 REMARK 465 LEU A 124 REMARK 465 LYS A 125 REMARK 465 ARG A 126 REMARK 465 LYS A 127 REMARK 465 GLU A 128 REMARK 465 GLU A 129 REMARK 465 GLN A 130 REMARK 465 VAL A 131 REMARK 465 ASP A 132 REMARK 465 THR A 133 REMARK 465 LEU A 134 REMARK 465 SER A 322 REMARK 465 SER A 323 REMARK 465 SER A 324 REMARK 465 THR A 325 REMARK 465 ASP A 326 REMARK 465 GLY B 118 REMARK 465 PRO B 119 REMARK 465 ASP B 120 REMARK 465 SER B 121 REMARK 465 MET B 122 REMARK 465 PRO B 123 REMARK 465 LEU B 124 REMARK 465 LYS B 125 REMARK 465 ARG B 126 REMARK 465 LYS B 127 REMARK 465 GLU B 128 REMARK 465 GLU B 129 REMARK 465 GLN B 130 REMARK 465 VAL B 131 REMARK 465 ASP B 132 REMARK 465 THR B 133 REMARK 465 LEU B 134 REMARK 465 ILE B 135 REMARK 465 CYS B 136 REMARK 465 GLN B 137 REMARK 465 ASN B 138 REMARK 465 LEU B 139 REMARK 465 ALA B 140 REMARK 465 CYS B 141 REMARK 465 ARG B 142 REMARK 465 ALA B 143 REMARK 465 THR B 144 REMARK 465 LEU B 145 REMARK 465 SER B 146 REMARK 465 LEU B 147 REMARK 465 GLU B 148 REMARK 465 ASP B 149 REMARK 465 GLY B 150 REMARK 465 TYR B 151 REMARK 465 CYS B 152 REMARK 465 LYS B 153 REMARK 465 ARG B 154 REMARK 465 CYS B 155 REMARK 465 GLU B 199 REMARK 465 THR B 200 REMARK 465 ALA B 201 REMARK 465 GLY B 202 REMARK 465 ILE B 203 REMARK 465 LEU B 204 REMARK 465 LYS B 205 REMARK 465 ASN B 206 REMARK 465 GLY B 207 REMARK 465 CYS B 208 REMARK 465 TYR B 209 REMARK 465 LEU B 321 REMARK 465 SER B 322 REMARK 465 SER B 323 REMARK 465 SER B 324 REMARK 465 THR B 325 REMARK 465 ASP B 326 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 141 -70.08 -143.41 REMARK 500 ILE A 159 -62.32 -94.95 REMARK 500 ILE B 159 -62.10 -94.02 REMARK 500 ASN B 166 71.33 63.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 136 SG REMARK 620 2 CYS A 141 SG 108.6 REMARK 620 3 CYS A 152 SG 110.7 110.1 REMARK 620 4 CYS A 155 SG 107.6 112.8 107.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 157 SG REMARK 620 2 CYS A 160 SG 106.0 REMARK 620 3 HIS A 191 ND1 104.5 102.6 REMARK 620 4 CYS A 194 SG 116.8 112.9 112.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 175 SG REMARK 620 2 CYS A 186 SG 110.1 REMARK 620 3 CYS A 218 SG 107.8 103.6 REMARK 620 4 CYS A 221 SG 109.8 115.5 109.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 157 SG REMARK 620 2 CYS B 160 SG 106.9 REMARK 620 3 HIS B 191 ND1 105.0 102.7 REMARK 620 4 CYS B 194 SG 117.0 112.2 111.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 175 SG REMARK 620 2 CYS B 186 SG 109.2 REMARK 620 3 CYS B 218 SG 109.6 103.5 REMARK 620 4 CYS B 221 SG 110.2 114.3 109.7 REMARK 620 N 1 2 3 DBREF 7QCE A 118 326 PDB 7QCE 7QCE 118 326 DBREF 7QCE B 118 326 PDB 7QCE 7QCE 118 326 SEQRES 1 A 209 GLY PRO ASP SER MET PRO LEU LYS ARG LYS GLU GLU GLN SEQRES 2 A 209 VAL ASP THR LEU ILE CYS GLN ASN LEU ALA CYS ARG ALA SEQRES 3 A 209 THR LEU SER LEU GLU ASP GLY TYR CYS LYS ARG CYS SER SEQRES 4 A 209 CYS CYS ILE CYS HIS CYS TYR ASP GLU ASN LYS ASP PRO SEQRES 5 A 209 SER LEU TRP LEU VAL CYS ASN SER ASP PRO PRO TYR LEU SEQRES 6 A 209 SER ASN SER CYS GLY MET SER CYS HIS LEU LYS CYS ALA SEQRES 7 A 209 LEU LYS HIS GLU THR ALA GLY ILE LEU LYS ASN GLY CYS SEQRES 8 A 209 TYR PRO LYS LEU ASP GLY SER PHE TYR CYS VAL PHE CYS SEQRES 9 A 209 GLY LYS VAL ASN TRP LEU ILE GLY SER TRP ARG LYS GLN SEQRES 10 A 209 LEU LEU ILE ALA LYS ASP ALA ARG ARG VAL ASP VAL LEU SEQRES 11 A 209 CYS ASP ARG LEU SER LEU SER HIS LYS MET LEU LYS GLY SEQRES 12 A 209 THR GLU HIS TYR LYS ASP MET GLN ASN ILE VAL ASN THR SEQRES 13 A 209 ALA VAL LYS LYS LEU LYS LYS GLU VAL GLY PRO LEU ASP SEQRES 14 A 209 LYS VAL SER ALA VAL MET ALA ARG GLY ILE VAL ASN ARG SEQRES 15 A 209 LEU ASN CYS GLY THR GLU VAL GLN LYS LEU CYS VAL SER SEQRES 16 A 209 ALA VAL GLU ALA ALA ASP SER MET LEU SER SER SER THR SEQRES 17 A 209 ASP SEQRES 1 B 209 GLY PRO ASP SER MET PRO LEU LYS ARG LYS GLU GLU GLN SEQRES 2 B 209 VAL ASP THR LEU ILE CYS GLN ASN LEU ALA CYS ARG ALA SEQRES 3 B 209 THR LEU SER LEU GLU ASP GLY TYR CYS LYS ARG CYS SER SEQRES 4 B 209 CYS CYS ILE CYS HIS CYS TYR ASP GLU ASN LYS ASP PRO SEQRES 5 B 209 SER LEU TRP LEU VAL CYS ASN SER ASP PRO PRO TYR LEU SEQRES 6 B 209 SER ASN SER CYS GLY MET SER CYS HIS LEU LYS CYS ALA SEQRES 7 B 209 LEU LYS HIS GLU THR ALA GLY ILE LEU LYS ASN GLY CYS SEQRES 8 B 209 TYR PRO LYS LEU ASP GLY SER PHE TYR CYS VAL PHE CYS SEQRES 9 B 209 GLY LYS VAL ASN TRP LEU ILE GLY SER TRP ARG LYS GLN SEQRES 10 B 209 LEU LEU ILE ALA LYS ASP ALA ARG ARG VAL ASP VAL LEU SEQRES 11 B 209 CYS ASP ARG LEU SER LEU SER HIS LYS MET LEU LYS GLY SEQRES 12 B 209 THR GLU HIS TYR LYS ASP MET GLN ASN ILE VAL ASN THR SEQRES 13 B 209 ALA VAL LYS LYS LEU LYS LYS GLU VAL GLY PRO LEU ASP SEQRES 14 B 209 LYS VAL SER ALA VAL MET ALA ARG GLY ILE VAL ASN ARG SEQRES 15 B 209 LEU ASN CYS GLY THR GLU VAL GLN LYS LEU CYS VAL SER SEQRES 16 B 209 ALA VAL GLU ALA ALA ASP SER MET LEU SER SER SER THR SEQRES 17 B 209 ASP HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET PEG A 404 7 HET PEG A 405 7 HET ZN B 401 1 HET ZN B 402 1 HETNAM ZN ZINC ION HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 ZN 5(ZN 2+) FORMUL 6 PEG 2(C4 H10 O3) FORMUL 10 HOH *52(H2 O) HELIX 1 AA1 ASP A 168 SER A 170 5 3 HELIX 2 AA2 LEU A 192 HIS A 198 1 7 HELIX 3 AA3 GLU A 199 GLY A 202 5 4 HELIX 4 AA4 LEU A 227 ALA A 241 1 15 HELIX 5 AA5 ARG A 243 LEU A 258 1 16 HELIX 6 AA6 TYR A 264 GLY A 283 1 20 HELIX 7 AA7 PRO A 284 VAL A 288 5 5 HELIX 8 AA8 SER A 289 ARG A 294 1 6 HELIX 9 AA9 ILE A 296 LEU A 300 5 5 HELIX 10 AB1 CYS A 302 LEU A 321 1 20 HELIX 11 AB2 ASP B 168 SER B 170 5 3 HELIX 12 AB3 LEU B 192 HIS B 198 1 7 HELIX 13 AB4 LEU B 227 ALA B 241 1 15 HELIX 14 AB5 ARG B 243 LEU B 258 1 16 HELIX 15 AB6 TYR B 264 GLY B 283 1 20 HELIX 16 AB7 PRO B 284 VAL B 288 5 5 HELIX 17 AB8 SER B 289 ARG B 294 1 6 HELIX 18 AB9 ILE B 296 LEU B 300 5 5 HELIX 19 AC1 CYS B 302 MET B 320 1 19 SHEET 1 AA1 2 TRP A 172 VAL A 174 0 SHEET 2 AA1 2 SER A 189 HIS A 191 -1 O CYS A 190 N LEU A 173 SHEET 1 AA2 2 SER A 215 TYR A 217 0 SHEET 2 AA2 2 VAL A 224 TRP A 226 -1 O ASN A 225 N PHE A 216 SHEET 1 AA3 2 TRP B 172 VAL B 174 0 SHEET 2 AA3 2 SER B 189 HIS B 191 -1 O CYS B 190 N LEU B 173 SHEET 1 AA4 2 SER B 215 TYR B 217 0 SHEET 2 AA4 2 VAL B 224 TRP B 226 -1 O ASN B 225 N PHE B 216 LINK SG CYS A 136 ZN ZN A 401 1555 1555 2.32 LINK SG CYS A 141 ZN ZN A 401 1555 1555 2.34 LINK SG CYS A 152 ZN ZN A 401 1555 1555 2.33 LINK SG CYS A 155 ZN ZN A 401 1555 1555 2.34 LINK SG CYS A 157 ZN ZN A 402 1555 1555 2.36 LINK SG CYS A 160 ZN ZN A 402 1555 1555 2.32 LINK SG CYS A 175 ZN ZN A 403 1555 1555 2.33 LINK SG CYS A 186 ZN ZN A 403 1555 1555 2.31 LINK ND1 HIS A 191 ZN ZN A 402 1555 1555 2.02 LINK SG CYS A 194 ZN ZN A 402 1555 1555 2.34 LINK SG CYS A 218 ZN ZN A 403 1555 1555 2.35 LINK SG CYS A 221 ZN ZN A 403 1555 1555 2.33 LINK SG CYS B 157 ZN ZN B 401 1555 1555 2.35 LINK SG CYS B 160 ZN ZN B 401 1555 1555 2.35 LINK SG CYS B 175 ZN ZN B 402 1555 1555 2.34 LINK SG CYS B 186 ZN ZN B 402 1555 1555 2.34 LINK ND1 HIS B 191 ZN ZN B 401 1555 1555 2.02 LINK SG CYS B 194 ZN ZN B 401 1555 1555 2.34 LINK SG CYS B 218 ZN ZN B 402 1555 1555 2.36 LINK SG CYS B 221 ZN ZN B 402 1555 1555 2.34 CISPEP 1 PRO A 179 PRO A 180 0 3.37 CISPEP 2 PRO B 179 PRO B 180 0 3.07 CRYST1 58.641 58.641 225.395 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017053 0.009846 0.000000 0.00000 SCALE2 0.000000 0.019691 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004437 0.00000