HEADER HYDROLASE 24-NOV-21 7QCH TITLE STRUCTURE OF SARS-COV-2 PAPAIN-LIKE PROTEASE BOUND TO N-(3,5- TITLE 2 DIMETHOXY-4-HYDROXYBENZYLIDEN)THIOSEMICARBAZONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAPAIN-LIKE PROTEASE NSP3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NON-STRUCTURAL PROTEIN 3,NSP3,PL2-PRO,PAPAIN-LIKE COMPND 5 PROTEINASE,PL-PRO; COMPND 6 EC: 3.4.19.12,3.4.22.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CYSTEIN-PROTEASE, INHIBITOR, SARS-COV-2, THIOSEMICARBAZONE, KEYWDS 2 DEUBIQUITINATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.EWERT,S.GUNTHER,P.REINKE,S.FALKE,J.LIESKE,F.MIGLIOLI,M.CARCELLI, AUTHOR 2 V.SRINIVASAN,C.BETZEL,H.HAN,K.LORENZEN,C.GUENTHER,S.NIEBLING, AUTHOR 3 M.GARCIA-ALAI,W.HINRICHS,D.ROGOLINO,A.MEENTS REVDAT 3 31-JAN-24 7QCH 1 REMARK REVDAT 2 11-MAY-22 7QCH 1 JRNL REVDAT 1 16-MAR-22 7QCH 0 JRNL AUTH W.EWERT,S.GUNTHER,F.MIGLIOLI,S.FALKE,P.Y.A.REINKE, JRNL AUTH 2 S.NIEBLING,C.GUNTHER,H.HAN,V.SRINIVASAN,H.BROGNARO,J.LIESKE, JRNL AUTH 3 K.LORENZEN,M.M.GARCIA-ALAI,C.BETZEL,M.CARCELLI,W.HINRICHS, JRNL AUTH 4 D.ROGOLINO,A.MEENTS JRNL TITL HYDRAZONES AND THIOSEMICARBAZONES TARGETING JRNL TITL 2 PROTEIN-PROTEIN-INTERACTIONS OF SARS-COV-2 PAPAIN-LIKE JRNL TITL 3 PROTEASE. JRNL REF FRONT CHEM V. 10 32431 2022 JRNL REFN ESSN 2296-2646 JRNL PMID 35480391 JRNL DOI 10.3389/FCHEM.2022.832431 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18-3855_9999 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 44803 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 2289 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2200 - 4.7300 1.00 2846 163 0.1660 0.2108 REMARK 3 2 4.7300 - 3.7600 1.00 2714 146 0.1448 0.1500 REMARK 3 3 3.7600 - 3.2800 1.00 2710 134 0.1681 0.2090 REMARK 3 4 3.2800 - 2.9800 1.00 2670 137 0.2222 0.2396 REMARK 3 5 2.9800 - 2.7700 1.00 2673 151 0.2276 0.2545 REMARK 3 6 2.7700 - 2.6100 1.00 2620 158 0.2842 0.2669 REMARK 3 7 2.6100 - 2.4800 1.00 2647 148 0.2222 0.2976 REMARK 3 8 2.4800 - 2.3700 1.00 2641 145 0.2279 0.2574 REMARK 3 9 2.3700 - 2.2800 1.00 2638 131 0.2577 0.3032 REMARK 3 10 2.2800 - 2.2000 1.00 2616 128 0.3599 0.3611 REMARK 3 11 2.2000 - 2.1300 1.00 2661 132 0.2679 0.2783 REMARK 3 12 2.1300 - 2.0700 1.00 2670 119 0.2919 0.3298 REMARK 3 13 2.0700 - 2.0100 1.00 2613 142 0.3257 0.3333 REMARK 3 14 2.0100 - 1.9700 1.00 2628 148 0.3634 0.4337 REMARK 3 15 1.9600 - 1.9200 1.00 2602 156 0.4435 0.4235 REMARK 3 16 1.9200 - 1.8800 0.99 2565 151 0.4942 0.5325 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.361 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.338 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2674 REMARK 3 ANGLE : 1.091 3640 REMARK 3 CHIRALITY : 0.060 394 REMARK 3 PLANARITY : 0.007 474 REMARK 3 DIHEDRAL : 21.531 978 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.5746 36.5902 -5.1743 REMARK 3 T TENSOR REMARK 3 T11: 0.5338 T22: 0.3619 REMARK 3 T33: 0.4741 T12: 0.0202 REMARK 3 T13: 0.1237 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 5.9139 L22: 6.7638 REMARK 3 L33: 5.1549 L12: 0.5007 REMARK 3 L13: -0.6019 L23: -1.1570 REMARK 3 S TENSOR REMARK 3 S11: 0.3052 S12: -0.4378 S13: 0.8549 REMARK 3 S21: 0.1832 S22: 0.0419 S23: 0.8442 REMARK 3 S31: -0.8337 S32: -0.4273 S33: -0.3607 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.2846 28.3628 -24.1486 REMARK 3 T TENSOR REMARK 3 T11: 0.2582 T22: 0.3205 REMARK 3 T33: 0.3154 T12: -0.0174 REMARK 3 T13: 0.0239 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 2.3657 L22: 2.7243 REMARK 3 L33: 8.7544 L12: 0.5137 REMARK 3 L13: 1.4323 L23: 1.0495 REMARK 3 S TENSOR REMARK 3 S11: 0.0487 S12: -0.0091 S13: 0.0154 REMARK 3 S21: 0.1188 S22: -0.0165 S23: 0.1628 REMARK 3 S31: 0.0260 S32: -0.2433 S33: -0.0277 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): 70.5560 24.8383 -33.8972 REMARK 3 T TENSOR REMARK 3 T11: 0.3418 T22: 0.6366 REMARK 3 T33: 0.4066 T12: 0.0162 REMARK 3 T13: -0.0242 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 6.7554 L22: 4.2121 REMARK 3 L33: 3.9193 L12: -0.4477 REMARK 3 L13: -2.1566 L23: -0.1945 REMARK 3 S TENSOR REMARK 3 S11: -0.1455 S12: 0.4381 S13: -0.3447 REMARK 3 S21: -0.0705 S22: -0.1242 S23: -0.7715 REMARK 3 S31: 0.1935 S32: 1.0352 S33: 0.2212 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 219 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 81.7325 23.6067 -41.4190 REMARK 3 T TENSOR REMARK 3 T11: 0.6012 T22: 1.3293 REMARK 3 T33: 0.9735 T12: 0.2205 REMARK 3 T13: 0.1366 T23: 0.2412 REMARK 3 L TENSOR REMARK 3 L11: 7.1214 L22: 4.6065 REMARK 3 L33: 4.8369 L12: 3.3365 REMARK 3 L13: -2.5123 L23: -0.0693 REMARK 3 S TENSOR REMARK 3 S11: 0.0233 S12: 1.1902 S13: 0.2530 REMARK 3 S21: -0.4540 S22: -0.4482 S23: -1.5830 REMARK 3 S31: -0.1409 S32: 1.2734 S33: 0.4032 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 239 THROUGH 296 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.1419 26.5488 -45.5477 REMARK 3 T TENSOR REMARK 3 T11: 0.3937 T22: 0.5397 REMARK 3 T33: 0.2593 T12: -0.0232 REMARK 3 T13: 0.0041 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 9.4679 L22: 2.7413 REMARK 3 L33: 5.8559 L12: 0.6396 REMARK 3 L13: 1.9052 L23: -0.9866 REMARK 3 S TENSOR REMARK 3 S11: -0.2319 S12: 1.2444 S13: 0.0859 REMARK 3 S21: -0.5322 S22: 0.2345 S23: -0.0826 REMARK 3 S31: -0.0724 S32: 0.4738 S33: -0.0236 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 297 THROUGH 314 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.6188 18.3014 -42.0887 REMARK 3 T TENSOR REMARK 3 T11: 0.5344 T22: 0.6835 REMARK 3 T33: 0.4165 T12: 0.1759 REMARK 3 T13: -0.0260 T23: -0.1887 REMARK 3 L TENSOR REMARK 3 L11: 7.5643 L22: 9.0550 REMARK 3 L33: 2.5593 L12: -2.9464 REMARK 3 L13: -1.0836 L23: -1.3604 REMARK 3 S TENSOR REMARK 3 S11: 0.2265 S12: 0.8132 S13: -0.6721 REMARK 3 S21: -0.5946 S22: -0.2106 S23: -0.3463 REMARK 3 S31: 1.0057 S32: 0.8769 S33: 0.0109 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QCH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1292119378. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44832 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 49.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7NFV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL PH 8.0, 10% GLYCEROL, REMARK 280 0.8 M SODIUM DIHYDROGENPHOSPHATE, 1.2 M POTASSIUM REMARK 280 HYDROGENPHOSPHATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.44400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.72200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 44.72200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 89.44400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 315 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 37 51.29 39.29 REMARK 500 SER A 103 -169.27 -112.10 REMARK 500 LYS A 279 -139.86 -123.66 REMARK 500 ASN A 308 -58.12 -126.54 REMARK 500 ASN A 308 -59.14 -124.60 REMARK 500 ILE A 314 124.82 -38.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 189 SG REMARK 620 2 CYS A 192 SG 132.9 REMARK 620 3 CYS A 224 SG 100.1 99.0 REMARK 620 4 CYS A 226 SG 92.6 134.1 74.2 REMARK 620 N 1 2 3 DBREF 7QCH A 1 315 UNP P0DTC1 R1A_SARS2 1564 1878 SEQRES 1 A 315 GLU VAL ARG THR ILE LYS VAL PHE THR THR VAL ASP ASN SEQRES 2 A 315 ILE ASN LEU HIS THR GLN VAL VAL ASP MET SER MET THR SEQRES 3 A 315 TYR GLY GLN GLN PHE GLY PRO THR TYR LEU ASP GLY ALA SEQRES 4 A 315 ASP VAL THR LYS ILE LYS PRO HIS ASN SER HIS GLU GLY SEQRES 5 A 315 LYS THR PHE TYR VAL LEU PRO ASN ASP ASP THR LEU ARG SEQRES 6 A 315 VAL GLU ALA PHE GLU TYR TYR HIS THR THR ASP PRO SER SEQRES 7 A 315 PHE LEU GLY ARG TYR MET SER ALA LEU ASN HIS THR LYS SEQRES 8 A 315 LYS TRP LYS TYR PRO GLN VAL ASN GLY LEU THR SER ILE SEQRES 9 A 315 LYS TRP ALA ASP ASN ASN CSO TYR LEU ALA THR ALA LEU SEQRES 10 A 315 LEU THR LEU GLN GLN ILE GLU LEU LYS PHE ASN PRO PRO SEQRES 11 A 315 ALA LEU GLN ASP ALA TYR TYR ARG ALA ARG ALA GLY GLU SEQRES 12 A 315 ALA ALA ASN PHE CYS ALA LEU ILE LEU ALA TYR CYS ASN SEQRES 13 A 315 LYS THR VAL GLY GLU LEU GLY ASP VAL ARG GLU THR MET SEQRES 14 A 315 SER TYR LEU PHE GLN HIS ALA ASN LEU ASP SER CYS LYS SEQRES 15 A 315 ARG VAL LEU ASN VAL VAL CYS LYS THR CYS GLY GLN GLN SEQRES 16 A 315 GLN THR THR LEU LYS GLY VAL GLU ALA VAL MET TYR MET SEQRES 17 A 315 GLY THR LEU SER TYR GLU GLN PHE LYS LYS GLY VAL GLN SEQRES 18 A 315 ILE PRO CYS THR CYS GLY LYS GLN ALA THR LYS TYR LEU SEQRES 19 A 315 VAL GLN GLN GLU SER PRO PHE VAL MET MET SER ALA PRO SEQRES 20 A 315 PRO ALA GLN TYR GLU LEU LYS HIS GLY THR PHE THR CYS SEQRES 21 A 315 ALA SER GLU TYR THR GLY ASN TYR GLN CYS GLY HIS TYR SEQRES 22 A 315 LYS HIS ILE THR SER LYS GLU THR LEU TYR CYS ILE ASP SEQRES 23 A 315 GLY ALA LEU LEU THR LYS SER SER GLU TYR LYS GLY PRO SEQRES 24 A 315 ILE THR ASP VAL PHE TYR LYS GLU ASN SER TYR THR THR SEQRES 25 A 315 THR ILE LYS MODRES 7QCH CSO A 111 CYS MODIFIED RESIDUE HET CSO A 111 7 HET A5I A 401 30 HET GOL A 402 14 HET GOL A 403 14 HET ZN A 404 1 HET PO4 A 405 5 HET PO4 A 406 5 HET PO4 A 407 5 HET PO4 A 408 5 HET PO4 A 409 5 HET CL A 410 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM A5I N-(3,5-DIMETOXY-4-HYDROXYBENZYLIDEN)THIOSEMICARBAZONE HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION HETNAM CL CHLORIDE ION HETSYN A5I 1-[(E)-(3,5-DIMETHOXY-4-OXIDANYL-PHENYL) HETSYN 2 A5I METHYLIDENEAMINO]THIOUREA HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 A5I C10 H13 N3 O3 S FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 ZN ZN 2+ FORMUL 6 PO4 5(O4 P 3-) FORMUL 11 CL CL 1- FORMUL 12 HOH *165(H2 O) HELIX 1 AA1 THR A 26 GLY A 32 1 7 HELIX 2 AA2 HIS A 47 GLU A 51 5 5 HELIX 3 AA3 ASP A 61 HIS A 73 1 13 HELIX 4 AA4 SER A 78 LYS A 91 1 14 HELIX 5 AA5 ASN A 110 GLN A 121 1 12 HELIX 6 AA6 PRO A 129 GLY A 142 1 14 HELIX 7 AA7 ALA A 144 ASN A 156 1 13 HELIX 8 AA8 ASP A 164 HIS A 175 1 12 HELIX 9 AA9 GLY A 201 VAL A 205 1 5 HELIX 10 AB1 SER A 212 GLY A 219 1 8 SHEET 1 AA1 5 HIS A 17 ASP A 22 0 SHEET 2 AA1 5 THR A 4 THR A 10 -1 N ILE A 5 O VAL A 21 SHEET 3 AA1 5 THR A 54 VAL A 57 1 O PHE A 55 N PHE A 8 SHEET 4 AA1 5 THR A 34 LEU A 36 -1 N TYR A 35 O TYR A 56 SHEET 5 AA1 5 ALA A 39 ASP A 40 -1 O ALA A 39 N LEU A 36 SHEET 1 AA2 2 GLN A 97 VAL A 98 0 SHEET 2 AA2 2 LEU A 101 THR A 102 -1 O LEU A 101 N VAL A 98 SHEET 1 AA3 4 GLY A 193 LYS A 200 0 SHEET 2 AA3 4 LYS A 182 CYS A 189 -1 N LEU A 185 O THR A 197 SHEET 3 AA3 4 GLN A 229 GLU A 238 -1 O GLU A 238 N LYS A 182 SHEET 4 AA3 4 VAL A 220 PRO A 223 -1 N VAL A 220 O LYS A 232 SHEET 1 AA4 4 GLY A 193 LYS A 200 0 SHEET 2 AA4 4 LYS A 182 CYS A 189 -1 N LEU A 185 O THR A 197 SHEET 3 AA4 4 GLN A 229 GLU A 238 -1 O GLU A 238 N LYS A 182 SHEET 4 AA4 4 SER A 309 THR A 311 -1 O TYR A 310 N GLN A 237 SHEET 1 AA5 7 MET A 206 MET A 208 0 SHEET 2 AA5 7 PHE A 241 LEU A 253 1 O SER A 245 N TYR A 207 SHEET 3 AA5 7 TYR A 296 LYS A 306 -1 O TYR A 296 N LEU A 253 SHEET 4 AA5 7 CYS A 260 GLY A 266 -1 N CYS A 260 O PHE A 304 SHEET 5 AA5 7 GLY A 271 SER A 278 -1 O LYS A 274 N GLU A 263 SHEET 6 AA5 7 LEU A 282 ASP A 286 -1 O ILE A 285 N HIS A 275 SHEET 7 AA5 7 LEU A 289 SER A 293 -1 O LEU A 289 N ASP A 286 LINK C ASN A 110 N CSO A 111 1555 1555 1.33 LINK C CSO A 111 N TYR A 112 1555 1555 1.34 LINK SG CYS A 189 ZN ZN A 404 1555 1555 2.49 LINK SG CYS A 192 ZN ZN A 404 1555 1555 2.49 LINK SG CYS A 224 ZN ZN A 404 1555 1555 2.64 LINK SG CYS A 226 ZN ZN A 404 1555 1555 2.15 CRYST1 83.650 83.650 134.166 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011955 0.006902 0.000000 0.00000 SCALE2 0.000000 0.013804 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007453 0.00000