HEADER SIGNALING PROTEIN 30-NOV-21 7QDW TITLE SOLUTION STRUCTURE OF THE COMPLEX BETWEEN PLASMODIAL ZNHIT3 AND NUFIP1 TITLE 2 PROTEINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: NUFIP1 DOMAIN-CONTAINING PROTEIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM (ISOLATE 3D7); SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: ISOLATE 3D7; SOURCE 5 GENE: PF3D7_0916900; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM (ISOLATE 3D7); SOURCE 10 ORGANISM_TAXID: 36329; SOURCE 11 STRAIN: ISOLATE 3D7; SOURCE 12 GENE: PF3D7_1473900; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PAC-HIT FOLD, JAW HELICES, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.E.CHAGOT,M.QUINTERNET REVDAT 5 19-JUN-24 7QDW 1 REMARK REVDAT 4 14-JUN-23 7QDW 1 REMARK REVDAT 3 13-APR-22 7QDW 1 JRNL REVDAT 2 06-APR-22 7QDW 1 JRNL REVDAT 1 30-MAR-22 7QDW 0 JRNL AUTH M.E.CHAGOT,A.BOUTILLIAT,A.KRIZNIK,M.QUINTERNET JRNL TITL STRUCTURAL ANALYSIS OF THE PLASMODIAL PROTEINS ZNHIT3 AND JRNL TITL 2 NUFIP1 PROVIDES INSIGHTS INTO THE SELECTIVITY OF A CONSERVED JRNL TITL 3 INTERACTION. JRNL REF BIOCHEMISTRY V. 61 479 2022 JRNL REFN ISSN 0006-2960 JRNL PMID 35315277 JRNL DOI 10.1021/ACS.BIOCHEM.1C00792 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 14 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QDW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1292119473. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.7 MM [U-100% 13C; U-100% 15N] REMARK 210 PFZNHIT3, 0.7 MM [U-100% 13C; U- REMARK 210 100% 15N] PFNUFIP1, 150 MM REMARK 210 SODIUM CHLORIDE, 10 MM SODIUM REMARK 210 PHOSPHATE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCA; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D HNCACO; REMARK 210 3D HBHA(CO)NH; 3D C(CO)NH; 3D REMARK 210 H(CCO)NH; 3D HCCH-COSY; 3D HCCH- REMARK 210 TOCSY; 3D HNHA; 3D HNCO ECOSY; REMARK 210 2D 1H-1H NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 1H-15N NOESY; 2D 1H- REMARK 210 13C HSQC ALIPHATIC; 2D 1H-13C REMARK 210 HSQC AROMATIC; 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.6.2, CARA, TALOS-N, REMARK 210 CYANA 3.98.13 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 RESTRAINT ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 ARG A 293 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 6 ARG A 293 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 11 ARG A 293 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 13 ARG A 293 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 14 ARG A 293 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 331 38.58 -87.19 REMARK 500 2 ASP A 265 42.81 -92.16 REMARK 500 2 ASP A 267 34.88 -78.70 REMARK 500 2 ASP A 331 35.64 -83.03 REMARK 500 3 ASP A 331 39.65 -88.64 REMARK 500 3 ILE B 818 -46.67 -149.34 REMARK 500 4 ASP A 267 20.08 -73.18 REMARK 500 5 HIS A 263 -52.05 61.70 REMARK 500 5 TYR A 266 34.54 -78.12 REMARK 500 5 ASP A 267 48.95 -82.15 REMARK 500 5 ASP A 331 12.05 58.38 REMARK 500 5 ILE B 818 -43.08 -142.65 REMARK 500 8 TYR A 266 43.26 -92.71 REMARK 500 8 ILE B 818 -50.08 -148.12 REMARK 500 9 HIS A 263 -95.10 53.31 REMARK 500 9 ASP A 265 55.13 -91.86 REMARK 500 9 TYR A 266 39.53 -75.86 REMARK 500 9 ASP B 839 34.55 -87.33 REMARK 500 10 ASP A 331 17.60 52.54 REMARK 500 10 ASP B 839 50.68 27.18 REMARK 500 11 HIS A 263 63.50 -113.70 REMARK 500 11 TYR A 266 34.99 -79.96 REMARK 500 11 ASP A 304 69.33 -102.37 REMARK 500 11 ILE B 818 -38.40 -138.76 REMARK 500 13 TYR A 266 35.18 -95.73 REMARK 500 13 ASP A 267 47.83 -83.52 REMARK 500 15 ASP A 267 40.64 -93.07 REMARK 500 17 MET A 264 171.88 59.51 REMARK 500 18 ASP A 267 38.34 -82.66 REMARK 500 18 ASP A 331 12.63 58.44 REMARK 500 19 ASP A 267 47.41 -94.05 REMARK 500 19 ASP A 331 19.80 50.08 REMARK 500 20 ASP A 265 54.34 -102.72 REMARK 500 20 TYR A 266 25.13 -74.25 REMARK 500 20 ASP A 331 32.04 -77.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 ARG A 293 0.08 SIDE CHAIN REMARK 500 4 ARG A 293 0.09 SIDE CHAIN REMARK 500 8 ARG A 293 0.09 SIDE CHAIN REMARK 500 13 ARG A 293 0.10 SIDE CHAIN REMARK 500 18 ARG A 293 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34693 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE COMPLEX BETWEEN PLASMODIAL ZNHIT3 AND REMARK 900 NUFIP1 PROTEINS DBREF 7QDW A 265 332 UNP Q8I2Y4 Q8I2Y4_PLAF7 265 332 DBREF 7QDW B 817 841 UNP Q8IK99 Q8IK99_PLAF7 817 841 SEQADV 7QDW GLY A 261 UNP Q8I2Y4 EXPRESSION TAG SEQADV 7QDW PRO A 262 UNP Q8I2Y4 EXPRESSION TAG SEQADV 7QDW HIS A 263 UNP Q8I2Y4 EXPRESSION TAG SEQADV 7QDW MET A 264 UNP Q8I2Y4 EXPRESSION TAG SEQRES 1 A 72 GLY PRO HIS MET ASP TYR ASP MET LEU THR GLU GLU GLN SEQRES 2 A 72 LYS LYS LYS LEU LYS GLU ASP HIS THR LEU LYS ILE LEU SEQRES 3 A 72 LEU LYS ASN ASN TYR VAL ARG GLU VAL PHE LYS GLN PHE SEQRES 4 A 72 THR LEU SER ASN ASP LYS ILE GLY TYR LEU SER HIS TYR SEQRES 5 A 72 ILE ASN ASP PRO THR ILE VAL GLN VAL ILE ASP HIS ILE SEQRES 6 A 72 MET LYS THR ILE ASP ASP THR SEQRES 1 B 25 ASP ILE TYR THR TYR GLU LYS LYS LEU ILE LYS SER ILE SEQRES 2 B 25 GLU TYR ILE THR LYS ASN LYS PHE PHE ASP ASP SER HELIX 1 AA1 THR A 270 ASP A 280 1 11 HELIX 2 AA2 ASP A 280 LYS A 288 1 9 HELIX 3 AA3 ASN A 289 SER A 302 1 14 HELIX 4 AA4 ASP A 304 ILE A 313 1 10 HELIX 5 AA5 ASP A 315 ASP A 331 1 17 HELIX 6 AA6 ILE B 818 ASN B 835 1 18 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1