HEADER VIRAL PROTEIN 03-DEC-21 7QF0 TITLE CRYSTAL STRUCTURE OF THE SARS-COV-2 RBD IN COMPLEX WITH THE HUMAN TITLE 2 ANTIBODY CV2.2325 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE PROTEIN S1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CV2.2325 HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: CV2.2325 LIGHT CHAIN; COMPND 11 CHAIN: L; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 GENE: S, 2; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 MOL_ID: 3; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606; SOURCE 20 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 21 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS NEUTRALIZATION, ANTIBODY, CORONAVIRUS, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.FERNANDEZ,R.PEDERZOLI,F.A.REY REVDAT 3 07-FEB-24 7QF0 1 REMARK REVDAT 2 28-JUN-23 7QF0 1 JRNL REVDAT 1 18-MAY-22 7QF0 0 JRNL AUTH C.PLANCHAIS,I.FERNANDEZ,T.BRUEL,G.D.DE MELO,M.PROT, JRNL AUTH 2 M.BERETTA,P.GUARDADO-CALVO,J.DUFLOO,L.M.MOLINOS-ALBERT, JRNL AUTH 3 M.BACKOVIC,J.CHIARAVALLI,E.GIRAUD,B.VESIN,L.CONQUET, JRNL AUTH 4 L.GRZELAK,D.PLANAS,I.STAROPOLI,F.GUIVEL-BENHASSINE,T.HIEU, JRNL AUTH 5 M.BOULLE,M.CERVANTES-GONZALEZ,M.N.UNGEHEUER,P.CHARNEAU, JRNL AUTH 6 S.VAN DER WERF,F.AGOU,J.D.DIMITROV,E.SIMON-LORIERE,H.BOURHY, JRNL AUTH 7 X.MONTAGUTELLI,F.A.REY,O.SCHWARTZ,H.MOUQUET JRNL TITL POTENT HUMAN BROADLY SARS-COV-2-NEUTRALIZING IGA AND IGG JRNL TITL 2 ANTIBODIES EFFECTIVE AGAINST OMICRON BA.1 AND BA.2. JRNL REF J.EXP.MED. V. 219 2022 JRNL REFN ESSN 1540-9538 JRNL PMID 35704748 JRNL DOI 10.1084/JEM.20220638 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 40936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2075 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8000 - 5.6700 1.00 2759 134 0.1623 0.2123 REMARK 3 2 5.6700 - 4.5000 1.00 2626 164 0.1289 0.1654 REMARK 3 3 4.5000 - 3.9300 1.00 2619 140 0.1421 0.1607 REMARK 3 4 3.9300 - 3.5700 1.00 2587 147 0.1829 0.2237 REMARK 3 5 3.5700 - 3.3200 1.00 2612 137 0.1985 0.2428 REMARK 3 6 3.3200 - 3.1200 1.00 2599 116 0.2182 0.2629 REMARK 3 7 3.1200 - 2.9700 1.00 2599 121 0.2129 0.2495 REMARK 3 8 2.9600 - 2.8400 1.00 2577 134 0.2208 0.2500 REMARK 3 9 2.8400 - 2.7300 1.00 2588 125 0.2113 0.2287 REMARK 3 10 2.7300 - 2.6300 1.00 2521 176 0.2166 0.2833 REMARK 3 11 2.6300 - 2.5500 1.00 2524 165 0.2325 0.2926 REMARK 3 12 2.5500 - 2.4800 1.00 2557 143 0.2462 0.2517 REMARK 3 13 2.4800 - 2.4100 1.00 2566 121 0.2510 0.2992 REMARK 3 14 2.4100 - 2.3500 1.00 2601 124 0.2443 0.2845 REMARK 3 15 2.3500 - 2.3000 0.99 2526 128 0.2631 0.2907 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 28 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 334 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9904 73.0442 -11.8385 REMARK 3 T TENSOR REMARK 3 T11: 0.6774 T22: 0.5091 REMARK 3 T33: 0.5531 T12: -0.1398 REMARK 3 T13: -0.0171 T23: -0.0726 REMARK 3 L TENSOR REMARK 3 L11: 0.7922 L22: 3.5025 REMARK 3 L33: 1.6776 L12: 0.5957 REMARK 3 L13: -0.0673 L23: -1.7141 REMARK 3 S TENSOR REMARK 3 S11: 0.4412 S12: -0.0836 S13: 0.3565 REMARK 3 S21: 0.6956 S22: -0.0272 S23: 0.3800 REMARK 3 S31: -1.1461 S32: 0.2146 S33: 0.0379 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 350 THROUGH 364 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8884 69.5319 -17.5813 REMARK 3 T TENSOR REMARK 3 T11: 0.4488 T22: 0.4525 REMARK 3 T33: 0.5844 T12: -0.0583 REMARK 3 T13: 0.0693 T23: 0.0411 REMARK 3 L TENSOR REMARK 3 L11: 1.1648 L22: 3.4444 REMARK 3 L33: 1.9524 L12: 1.2454 REMARK 3 L13: -0.4335 L23: -1.5432 REMARK 3 S TENSOR REMARK 3 S11: 0.5670 S12: 0.1927 S13: 0.2805 REMARK 3 S21: 0.9251 S22: -0.2257 S23: 0.1577 REMARK 3 S31: -1.3639 S32: 0.3125 S33: -0.0227 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 365 THROUGH 375 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0342 67.5738 -15.6601 REMARK 3 T TENSOR REMARK 3 T11: 0.5090 T22: 0.9885 REMARK 3 T33: 0.7727 T12: -0.2142 REMARK 3 T13: -0.0010 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.0768 L22: 7.8170 REMARK 3 L33: 7.2151 L12: -0.5965 REMARK 3 L13: 0.6194 L23: -7.5851 REMARK 3 S TENSOR REMARK 3 S11: -0.1424 S12: 0.1772 S13: 0.2126 REMARK 3 S21: 0.2901 S22: -0.5775 S23: -0.6796 REMARK 3 S31: -0.9756 S32: 1.1882 S33: 0.4881 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 376 THROUGH 393 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4045 63.6191 -25.3528 REMARK 3 T TENSOR REMARK 3 T11: 0.4662 T22: 0.8263 REMARK 3 T33: 0.7175 T12: -0.0541 REMARK 3 T13: 0.0570 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.1247 L22: 2.8905 REMARK 3 L33: 2.0587 L12: -0.2413 REMARK 3 L13: -0.0743 L23: -1.9917 REMARK 3 S TENSOR REMARK 3 S11: -0.1052 S12: 0.2695 S13: 0.0322 REMARK 3 S21: -0.1387 S22: -0.2701 S23: -0.3727 REMARK 3 S31: -0.2850 S32: 0.3059 S33: 0.3037 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 394 THROUGH 409 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6945 58.7701 -11.6550 REMARK 3 T TENSOR REMARK 3 T11: 0.3423 T22: 0.4603 REMARK 3 T33: 0.5842 T12: -0.0667 REMARK 3 T13: 0.0452 T23: -0.0347 REMARK 3 L TENSOR REMARK 3 L11: 1.9320 L22: 3.1254 REMARK 3 L33: 3.8406 L12: -0.1313 REMARK 3 L13: -0.1223 L23: -1.3870 REMARK 3 S TENSOR REMARK 3 S11: 0.0437 S12: 0.0740 S13: 0.0898 REMARK 3 S21: 0.2946 S22: -0.0261 S23: -0.1719 REMARK 3 S31: -0.3100 S32: 0.1346 S33: 0.0655 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 410 THROUGH 442 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8917 56.2183 -12.6854 REMARK 3 T TENSOR REMARK 3 T11: 0.3579 T22: 0.4595 REMARK 3 T33: 0.4962 T12: -0.0381 REMARK 3 T13: 0.0073 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 0.8728 L22: 1.6056 REMARK 3 L33: 1.7315 L12: 0.1688 REMARK 3 L13: 0.0944 L23: -0.9818 REMARK 3 S TENSOR REMARK 3 S11: 0.1182 S12: 0.0404 S13: 0.0194 REMARK 3 S21: -0.0806 S22: -0.1914 S23: -0.0232 REMARK 3 S31: -0.3860 S32: 0.2350 S33: 0.0425 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 443 THROUGH 459 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9977 56.2482 -0.3926 REMARK 3 T TENSOR REMARK 3 T11: 0.4666 T22: 0.4731 REMARK 3 T33: 0.5806 T12: -0.0469 REMARK 3 T13: 0.1008 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 1.5003 L22: 2.4804 REMARK 3 L33: 1.8358 L12: -0.0055 REMARK 3 L13: 0.0232 L23: -1.7841 REMARK 3 S TENSOR REMARK 3 S11: 0.2169 S12: -0.4131 S13: 0.0673 REMARK 3 S21: 0.3331 S22: -0.2200 S23: 0.4471 REMARK 3 S31: -0.4795 S32: -0.0610 S33: -0.0601 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 460 THROUGH 479 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8366 52.4027 -8.7432 REMARK 3 T TENSOR REMARK 3 T11: 0.3154 T22: 0.4686 REMARK 3 T33: 0.7365 T12: 0.0265 REMARK 3 T13: 0.0198 T23: 0.0997 REMARK 3 L TENSOR REMARK 3 L11: 0.5839 L22: 1.9895 REMARK 3 L33: 1.6243 L12: 0.3128 REMARK 3 L13: -0.1010 L23: -0.2268 REMARK 3 S TENSOR REMARK 3 S11: 0.0616 S12: 0.2402 S13: -0.1352 REMARK 3 S21: -0.1058 S22: 0.3467 S23: 1.2029 REMARK 3 S31: -0.1074 S32: -0.6709 S33: -0.2253 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 480 THROUGH 494 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.5333 50.0872 2.6835 REMARK 3 T TENSOR REMARK 3 T11: 0.4224 T22: 0.4245 REMARK 3 T33: 0.9305 T12: 0.1308 REMARK 3 T13: 0.2347 T23: 0.0680 REMARK 3 L TENSOR REMARK 3 L11: 0.0463 L22: 0.7338 REMARK 3 L33: 0.4329 L12: -0.1913 REMARK 3 L13: 0.1958 L23: -0.4961 REMARK 3 S TENSOR REMARK 3 S11: 0.2933 S12: -0.2552 S13: 0.0503 REMARK 3 S21: 1.4502 S22: 0.1168 S23: 1.3201 REMARK 3 S31: -0.0912 S32: -0.4310 S33: -0.1026 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 495 THROUGH 506 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6231 55.7482 3.9215 REMARK 3 T TENSOR REMARK 3 T11: 0.6151 T22: 0.6031 REMARK 3 T33: 0.6082 T12: -0.1189 REMARK 3 T13: -0.0276 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 2.8529 L22: 2.1042 REMARK 3 L33: 1.0570 L12: -0.8750 REMARK 3 L13: 1.0329 L23: -1.4075 REMARK 3 S TENSOR REMARK 3 S11: -0.0845 S12: -0.1655 S13: 0.1812 REMARK 3 S21: 0.4971 S22: 0.0690 S23: 0.2660 REMARK 3 S31: -0.4540 S32: 0.1069 S33: 0.0986 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 507 THROUGH 516 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8105 63.1529 -14.4768 REMARK 3 T TENSOR REMARK 3 T11: 0.3418 T22: 0.5234 REMARK 3 T33: 0.4304 T12: -0.0718 REMARK 3 T13: -0.0189 T23: 0.0789 REMARK 3 L TENSOR REMARK 3 L11: 0.6106 L22: 2.7503 REMARK 3 L33: 3.4749 L12: 0.4281 REMARK 3 L13: -0.6824 L23: -0.9491 REMARK 3 S TENSOR REMARK 3 S11: 0.1159 S12: 0.3325 S13: 0.1474 REMARK 3 S21: 0.0161 S22: 0.4210 S23: 0.1851 REMARK 3 S31: -0.0538 S32: 0.0965 S33: 0.1071 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 517 THROUGH 528 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7008 71.9203 -32.2594 REMARK 3 T TENSOR REMARK 3 T11: 0.7675 T22: 0.7056 REMARK 3 T33: 0.6751 T12: -0.1490 REMARK 3 T13: 0.0158 T23: 0.0979 REMARK 3 L TENSOR REMARK 3 L11: 2.5419 L22: 2.2043 REMARK 3 L33: 4.1567 L12: -1.7887 REMARK 3 L13: 2.1332 L23: -0.4717 REMARK 3 S TENSOR REMARK 3 S11: 0.4135 S12: 0.1731 S13: -0.1124 REMARK 3 S21: -0.1871 S22: -0.0773 S23: -0.2949 REMARK 3 S31: -0.3828 S32: 0.4330 S33: 0.1230 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5575 21.2581 -3.1884 REMARK 3 T TENSOR REMARK 3 T11: 0.3671 T22: 0.3303 REMARK 3 T33: 0.5451 T12: -0.0378 REMARK 3 T13: -0.0192 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.7203 L22: 3.4995 REMARK 3 L33: 1.1305 L12: -0.2125 REMARK 3 L13: 0.8495 L23: -1.0907 REMARK 3 S TENSOR REMARK 3 S11: -0.0600 S12: 0.0562 S13: -0.1216 REMARK 3 S21: 0.0644 S22: 0.0830 S23: 0.8190 REMARK 3 S31: 0.2014 S32: -0.1279 S33: -0.0826 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 18 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2627 33.2888 -3.4202 REMARK 3 T TENSOR REMARK 3 T11: 0.3057 T22: 0.3709 REMARK 3 T33: 0.5430 T12: 0.0192 REMARK 3 T13: -0.0157 T23: -0.0326 REMARK 3 L TENSOR REMARK 3 L11: 0.0495 L22: 3.0911 REMARK 3 L33: 1.5404 L12: -0.2178 REMARK 3 L13: -0.3803 L23: -0.4096 REMARK 3 S TENSOR REMARK 3 S11: 0.0482 S12: 0.1381 S13: -0.0788 REMARK 3 S21: 0.0184 S22: 0.0573 S23: 0.6949 REMARK 3 S31: -0.0224 S32: -0.0687 S33: -0.1465 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 60 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9347 29.9979 -9.7259 REMARK 3 T TENSOR REMARK 3 T11: 0.3359 T22: 0.3901 REMARK 3 T33: 0.5464 T12: 0.0124 REMARK 3 T13: -0.0908 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 1.3571 L22: 3.1564 REMARK 3 L33: 2.4466 L12: -0.9639 REMARK 3 L13: -0.7545 L23: -0.4264 REMARK 3 S TENSOR REMARK 3 S11: 0.0623 S12: 0.4832 S13: -0.1663 REMARK 3 S21: -0.6401 S22: -0.0242 S23: 0.4918 REMARK 3 S31: 0.2717 S32: -0.1146 S33: -0.1328 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 83 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0892 30.1788 0.6771 REMARK 3 T TENSOR REMARK 3 T11: 0.3385 T22: 0.3379 REMARK 3 T33: 0.5265 T12: 0.0061 REMARK 3 T13: 0.0069 T23: -0.0266 REMARK 3 L TENSOR REMARK 3 L11: -0.0497 L22: 2.7269 REMARK 3 L33: 1.9183 L12: -0.6222 REMARK 3 L13: 0.2718 L23: -0.2848 REMARK 3 S TENSOR REMARK 3 S11: -0.0237 S12: 0.0383 S13: 0.2236 REMARK 3 S21: 0.1407 S22: 0.0408 S23: 0.3459 REMARK 3 S31: 0.0693 S32: -0.0010 S33: -0.1253 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 114 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9038 2.5461 12.5590 REMARK 3 T TENSOR REMARK 3 T11: 0.3708 T22: 0.3542 REMARK 3 T33: 0.2281 T12: -0.0149 REMARK 3 T13: -0.0029 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 1.0676 L22: 2.4120 REMARK 3 L33: 1.7172 L12: -0.0723 REMARK 3 L13: 0.2684 L23: -0.4768 REMARK 3 S TENSOR REMARK 3 S11: 0.0395 S12: -0.0498 S13: -0.0008 REMARK 3 S21: 0.1681 S22: -0.1806 S23: -0.1243 REMARK 3 S31: 0.1505 S32: 0.1620 S33: 0.0063 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 139 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5396 3.3250 15.8813 REMARK 3 T TENSOR REMARK 3 T11: 0.3768 T22: 0.4047 REMARK 3 T33: 0.1898 T12: -0.0047 REMARK 3 T13: 0.0102 T23: -0.0487 REMARK 3 L TENSOR REMARK 3 L11: 0.6235 L22: 2.0527 REMARK 3 L33: 1.8465 L12: -0.1219 REMARK 3 L13: 0.7952 L23: -1.1522 REMARK 3 S TENSOR REMARK 3 S11: 0.1336 S12: -0.0596 S13: 0.0867 REMARK 3 S21: 0.1382 S22: -0.1447 S23: 0.0060 REMARK 3 S31: 0.1262 S32: 0.0221 S33: -0.0420 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 162 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7819 6.5390 19.5732 REMARK 3 T TENSOR REMARK 3 T11: 0.3818 T22: 0.4078 REMARK 3 T33: 0.1906 T12: -0.0295 REMARK 3 T13: -0.0017 T23: -0.0532 REMARK 3 L TENSOR REMARK 3 L11: 1.2639 L22: 2.0731 REMARK 3 L33: 1.6333 L12: -0.8684 REMARK 3 L13: -0.0904 L23: -0.5918 REMARK 3 S TENSOR REMARK 3 S11: -0.0728 S12: -0.2869 S13: -0.0127 REMARK 3 S21: 0.2357 S22: 0.0229 S23: -0.0660 REMARK 3 S31: -0.0179 S32: -0.1323 S33: -0.0234 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 193 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4428 -2.8420 18.9343 REMARK 3 T TENSOR REMARK 3 T11: 0.3577 T22: 0.4586 REMARK 3 T33: 0.2816 T12: -0.0512 REMARK 3 T13: 0.0128 T23: -0.0572 REMARK 3 L TENSOR REMARK 3 L11: 1.6720 L22: 2.9561 REMARK 3 L33: 3.8506 L12: -0.2146 REMARK 3 L13: -0.2084 L23: -1.2731 REMARK 3 S TENSOR REMARK 3 S11: 0.0493 S12: -0.0996 S13: -0.1609 REMARK 3 S21: 0.1110 S22: 0.0530 S23: 0.1168 REMARK 3 S31: 0.5336 S32: -0.3434 S33: -0.2463 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 208 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2370 -6.5233 17.9607 REMARK 3 T TENSOR REMARK 3 T11: 0.4905 T22: 0.4168 REMARK 3 T33: 0.3024 T12: -0.0226 REMARK 3 T13: 0.0289 T23: -0.0323 REMARK 3 L TENSOR REMARK 3 L11: 3.1218 L22: 2.7296 REMARK 3 L33: 5.0325 L12: 0.0699 REMARK 3 L13: 1.4767 L23: -0.9441 REMARK 3 S TENSOR REMARK 3 S11: -0.0123 S12: -0.0282 S13: -0.8493 REMARK 3 S21: 0.2997 S22: 0.2601 S23: -0.1326 REMARK 3 S31: 0.3743 S32: 0.1660 S33: -0.3017 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0773 36.7374 19.7726 REMARK 3 T TENSOR REMARK 3 T11: 0.5779 T22: 0.5103 REMARK 3 T33: 0.5243 T12: -0.0558 REMARK 3 T13: 0.1126 T23: -0.0448 REMARK 3 L TENSOR REMARK 3 L11: 0.9029 L22: 3.3649 REMARK 3 L33: 1.7572 L12: 0.0874 REMARK 3 L13: 0.6246 L23: -1.9645 REMARK 3 S TENSOR REMARK 3 S11: 0.0481 S12: -0.4260 S13: 0.0512 REMARK 3 S21: 0.4623 S22: -0.4609 S23: 0.4306 REMARK 3 S31: -0.4034 S32: 1.0167 S33: 0.0641 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 19 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6239 41.7026 15.2599 REMARK 3 T TENSOR REMARK 3 T11: 0.5644 T22: 0.4131 REMARK 3 T33: 0.5433 T12: 0.0052 REMARK 3 T13: 0.1362 T23: -0.1227 REMARK 3 L TENSOR REMARK 3 L11: 0.9758 L22: 2.7885 REMARK 3 L33: 2.5604 L12: -0.1145 REMARK 3 L13: 0.5383 L23: -1.4700 REMARK 3 S TENSOR REMARK 3 S11: 0.0129 S12: -0.1733 S13: 0.1605 REMARK 3 S21: 0.7210 S22: 0.0069 S23: 0.3689 REMARK 3 S31: -0.2875 S32: 0.1052 S33: -0.0618 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 76 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7330 36.8995 12.6830 REMARK 3 T TENSOR REMARK 3 T11: 0.4489 T22: 0.4063 REMARK 3 T33: 0.5303 T12: -0.0266 REMARK 3 T13: 0.0868 T23: -0.1065 REMARK 3 L TENSOR REMARK 3 L11: 1.1343 L22: 2.7463 REMARK 3 L33: 1.8725 L12: -0.2301 REMARK 3 L13: 0.4557 L23: -1.0669 REMARK 3 S TENSOR REMARK 3 S11: 0.0934 S12: -0.1450 S13: 0.2935 REMARK 3 S21: 0.5130 S22: 0.0645 S23: 0.4236 REMARK 3 S31: -0.2154 S32: 0.1276 S33: -0.0734 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 104 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2419 24.5458 30.0196 REMARK 3 T TENSOR REMARK 3 T11: 0.6501 T22: 0.5119 REMARK 3 T33: 0.4952 T12: -0.0054 REMARK 3 T13: 0.0305 T23: -0.1323 REMARK 3 L TENSOR REMARK 3 L11: 1.4422 L22: 4.0324 REMARK 3 L33: 1.1486 L12: -2.1460 REMARK 3 L13: 0.8079 L23: -2.1128 REMARK 3 S TENSOR REMARK 3 S11: 0.2093 S12: 0.0890 S13: 0.6484 REMARK 3 S21: -0.0585 S22: -0.0008 S23: -0.2464 REMARK 3 S31: 0.0310 S32: 0.2095 S33: -0.0305 REMARK 3 TLS GROUP : 26 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 115 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8538 -0.6754 18.6586 REMARK 3 T TENSOR REMARK 3 T11: 0.4316 T22: 0.4607 REMARK 3 T33: 0.2743 T12: -0.0072 REMARK 3 T13: -0.0176 T23: -0.0383 REMARK 3 L TENSOR REMARK 3 L11: 1.9323 L22: 3.2983 REMARK 3 L33: 3.8574 L12: -0.2067 REMARK 3 L13: -0.0093 L23: -0.0222 REMARK 3 S TENSOR REMARK 3 S11: 0.0553 S12: 0.0170 S13: -0.0178 REMARK 3 S21: 0.5516 S22: -0.2997 S23: 0.0029 REMARK 3 S31: 1.1302 S32: -0.1737 S33: 0.1921 REMARK 3 TLS GROUP : 27 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 130 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4094 13.6690 21.0457 REMARK 3 T TENSOR REMARK 3 T11: 0.4103 T22: 0.3833 REMARK 3 T33: 0.3425 T12: -0.0259 REMARK 3 T13: -0.0419 T23: -0.0456 REMARK 3 L TENSOR REMARK 3 L11: 1.5448 L22: 2.0264 REMARK 3 L33: 1.8078 L12: -0.5289 REMARK 3 L13: -0.2246 L23: -0.2821 REMARK 3 S TENSOR REMARK 3 S11: 0.0478 S12: -0.0446 S13: 0.3097 REMARK 3 S21: 0.3176 S22: -0.1181 S23: -0.2969 REMARK 3 S31: -0.0793 S32: 0.1737 S33: 0.1305 REMARK 3 TLS GROUP : 28 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 165 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5451 9.7686 23.5194 REMARK 3 T TENSOR REMARK 3 T11: 0.3851 T22: 0.3950 REMARK 3 T33: 0.3358 T12: -0.0477 REMARK 3 T13: -0.0278 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 2.5433 L22: 2.8126 REMARK 3 L33: 1.8226 L12: -1.5774 REMARK 3 L13: -0.5481 L23: 1.0824 REMARK 3 S TENSOR REMARK 3 S11: 0.1220 S12: -0.1064 S13: 0.0875 REMARK 3 S21: 0.2547 S22: -0.1114 S23: -0.1816 REMARK 3 S31: 0.0477 S32: 0.0802 S33: 0.1375 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QF0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1292119542. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9778 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40972 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 48.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.14700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 13.30 REMARK 200 R MERGE FOR SHELL (I) : 1.18800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6M0J, 5I1E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMMONIUM CITRATE (PH 7.0), 12% REMARK 280 PEG 3350,, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.54650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.54650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.28250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.43750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.28250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.43750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.54650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.28250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.43750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.54650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.28250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.43750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 729 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 331 REMARK 465 ILE A 332 REMARK 465 THR A 333 REMARK 465 GLY A 529 REMARK 465 SER A 530 REMARK 465 GLY A 531 REMARK 465 ASP A 532 REMARK 465 ASP A 533 REMARK 465 ASP A 534 REMARK 465 ASP A 535 REMARK 465 LYS A 536 REMARK 465 SER H 134 REMARK 465 THR H 135 REMARK 465 SER H 136 REMARK 465 CYS H 220 REMARK 465 ASP H 221 REMARK 465 LYS H 222 REMARK 465 THR H 223 REMARK 465 HIS H 224 REMARK 465 HIS H 225 REMARK 465 HIS H 226 REMARK 465 HIS H 227 REMARK 465 HIS H 228 REMARK 465 HIS H 229 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS H 133 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 422 -52.17 -133.55 REMARK 500 ASP A 428 35.30 -97.54 REMARK 500 ASP H 100 -108.25 53.51 REMARK 500 SER L 30 -126.85 55.44 REMARK 500 ALA L 51 -33.62 69.55 REMARK 500 ASP L 92 99.09 -175.21 REMARK 500 ASN L 139 71.59 57.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 601 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 396 O REMARK 620 2 ASP A 398 OD2 130.0 REMARK 620 3 VAL A 512 O 63.5 104.2 REMARK 620 4 SER A 514 OG 106.3 117.5 125.9 REMARK 620 N 1 2 3 DBREF 7QF0 A 331 528 UNP P0DTC2 SPIKE_SARS2 331 528 DBREF 7QF0 H 1 229 PDB 7QF0 7QF0 1 229 DBREF 7QF0 L 1 214 PDB 7QF0 7QF0 1 214 SEQADV 7QF0 PHE A 367 UNP P0DTC2 VAL 367 VARIANT SEQADV 7QF0 GLY A 529 UNP P0DTC2 EXPRESSION TAG SEQADV 7QF0 SER A 530 UNP P0DTC2 EXPRESSION TAG SEQADV 7QF0 GLY A 531 UNP P0DTC2 EXPRESSION TAG SEQADV 7QF0 ASP A 532 UNP P0DTC2 EXPRESSION TAG SEQADV 7QF0 ASP A 533 UNP P0DTC2 EXPRESSION TAG SEQADV 7QF0 ASP A 534 UNP P0DTC2 EXPRESSION TAG SEQADV 7QF0 ASP A 535 UNP P0DTC2 EXPRESSION TAG SEQADV 7QF0 LYS A 536 UNP P0DTC2 EXPRESSION TAG SEQRES 1 A 206 ASN ILE THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN SEQRES 2 A 206 ALA THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS SEQRES 3 A 206 ARG ILE SER ASN CYS VAL ALA ASP TYR SER PHE LEU TYR SEQRES 4 A 206 ASN SER ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SEQRES 5 A 206 SER PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL SEQRES 6 A 206 TYR ALA ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG SEQRES 7 A 206 GLN ILE ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR SEQRES 8 A 206 ASN TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE SEQRES 9 A 206 ALA TRP ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY SEQRES 10 A 206 ASN TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN SEQRES 11 A 206 LEU LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR SEQRES 12 A 206 GLN ALA GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE SEQRES 13 A 206 ASN CYS TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO SEQRES 14 A 206 THR ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL SEQRES 15 A 206 LEU SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS SEQRES 16 A 206 GLY PRO LYS GLY SER GLY ASP ASP ASP ASP LYS SEQRES 1 H 229 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU ILE GLN SEQRES 2 H 229 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 229 PHE THR VAL SER ARG ASN TYR MET SER TRP VAL ARG GLN SEQRES 4 H 229 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER VAL ILE TYR SEQRES 5 H 229 SER GLY GLY SER THR PHE TYR ALA ASP SER VAL LYS GLY SEQRES 6 H 229 ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR LEU SEQRES 7 H 229 TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR ALA SEQRES 8 H 229 VAL TYR TYR CYS ALA ARG ASP GLY ASP TYR TYR GLY MET SEQRES 9 H 229 ASP VAL TRP GLY GLN GLY THR THR VAL THR VAL SER SER SEQRES 10 H 229 ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SEQRES 11 H 229 SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY SEQRES 12 H 229 CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SEQRES 13 H 229 SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR SEQRES 14 H 229 PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SEQRES 15 H 229 SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR SEQRES 16 H 229 GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN SEQRES 17 H 229 THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS ASP SEQRES 18 H 229 LYS THR HIS HIS HIS HIS HIS HIS SEQRES 1 L 214 ASP ILE GLN MET THR GLN SER PRO SER PHE LEU SER ALA SEQRES 2 L 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 214 GLN GLY ILE SER SER PHE LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR GLY ALA SER SEQRES 5 L 214 THR LEU GLN SER GLY VAL THR SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR GLU PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 214 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN ARG LEU SEQRES 8 L 214 ASP SER TYR PRO PRO ILE THR PHE GLY GLN GLY THR ARG SEQRES 9 L 214 LEU GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 L 214 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 L 214 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 L 214 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 L 214 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 L 214 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 L 214 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 L 214 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 L 214 SER PHE ASN ARG GLY GLU HET NAG B 1 14 HET NAG B 2 14 HET NA A 601 1 HET CL H 301 1 HET CL L 301 1 HET CL L 302 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 2(C8 H15 N O6) FORMUL 5 NA NA 1+ FORMUL 6 CL 3(CL 1-) FORMUL 9 HOH *234(H2 O) HELIX 1 AA1 PRO A 337 ASN A 343 1 7 HELIX 2 AA2 SER A 349 TRP A 353 5 5 HELIX 3 AA3 TYR A 365 ASN A 370 1 6 HELIX 4 AA4 SER A 383 ASP A 389 5 7 HELIX 5 AA5 ASP A 405 ILE A 410 5 6 HELIX 6 AA6 GLY A 416 ASN A 422 1 7 HELIX 7 AA7 SER A 438 SER A 443 1 6 HELIX 8 AA8 GLY A 502 TYR A 505 5 4 HELIX 9 AA9 THR H 28 ASN H 32 5 5 HELIX 10 AB1 ARG H 86 THR H 90 5 5 HELIX 11 AB2 ASP H 100 TYR H 102 5 3 HELIX 12 AB3 SER H 160 ALA H 162 5 3 HELIX 13 AB4 SER H 191 LEU H 193 5 3 HELIX 14 AB5 LYS H 205 ASN H 208 5 4 HELIX 15 AB6 GLN L 79 PHE L 83 5 5 HELIX 16 AB7 SER L 122 SER L 128 1 7 HELIX 17 AB8 LYS L 184 LYS L 189 1 6 SHEET 1 AA1 5 ASN A 354 ILE A 358 0 SHEET 2 AA1 5 ASN A 394 ARG A 403 -1 O VAL A 395 N ILE A 358 SHEET 3 AA1 5 PRO A 507 GLU A 516 -1 O VAL A 510 N PHE A 400 SHEET 4 AA1 5 GLY A 431 ASN A 437 -1 N ILE A 434 O VAL A 511 SHEET 5 AA1 5 THR A 376 TYR A 380 -1 N TYR A 380 O GLY A 431 SHEET 1 AA2 3 CYS A 361 VAL A 362 0 SHEET 2 AA2 3 VAL A 524 CYS A 525 1 O CYS A 525 N CYS A 361 SHEET 3 AA2 3 CYS A 391 PHE A 392 -1 N PHE A 392 O VAL A 524 SHEET 1 AA3 2 LEU A 452 ARG A 454 0 SHEET 2 AA3 2 LEU A 492 SER A 494 -1 O GLN A 493 N TYR A 453 SHEET 1 AA4 2 TYR A 473 GLN A 474 0 SHEET 2 AA4 2 CYS A 488 TYR A 489 -1 O TYR A 489 N TYR A 473 SHEET 1 AA5 4 GLN H 3 SER H 7 0 SHEET 2 AA5 4 LEU H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 AA5 4 THR H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 AA5 4 PHE H 67 ASP H 72 -1 N THR H 68 O GLN H 81 SHEET 1 AA6 6 LEU H 11 ILE H 12 0 SHEET 2 AA6 6 THR H 111 VAL H 115 1 O THR H 114 N ILE H 12 SHEET 3 AA6 6 ALA H 91 ASP H 98 -1 N TYR H 93 O THR H 111 SHEET 4 AA6 6 TYR H 33 GLN H 39 -1 N VAL H 37 O TYR H 94 SHEET 5 AA6 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA6 6 THR H 57 TYR H 59 -1 O PHE H 58 N VAL H 50 SHEET 1 AA7 4 LEU H 11 ILE H 12 0 SHEET 2 AA7 4 THR H 111 VAL H 115 1 O THR H 114 N ILE H 12 SHEET 3 AA7 4 ALA H 91 ASP H 98 -1 N TYR H 93 O THR H 111 SHEET 4 AA7 4 MET H 104 TRP H 107 -1 O VAL H 106 N ARG H 97 SHEET 1 AA8 4 SER H 124 LEU H 128 0 SHEET 2 AA8 4 THR H 139 TYR H 149 -1 O LEU H 145 N PHE H 126 SHEET 3 AA8 4 TYR H 180 PRO H 189 -1 O TYR H 180 N TYR H 149 SHEET 4 AA8 4 VAL H 167 THR H 169 -1 N HIS H 168 O VAL H 185 SHEET 1 AA9 4 SER H 124 LEU H 128 0 SHEET 2 AA9 4 THR H 139 TYR H 149 -1 O LEU H 145 N PHE H 126 SHEET 3 AA9 4 TYR H 180 PRO H 189 -1 O TYR H 180 N TYR H 149 SHEET 4 AA9 4 VAL H 173 LEU H 174 -1 N VAL H 173 O SER H 181 SHEET 1 AB1 3 THR H 155 TRP H 158 0 SHEET 2 AB1 3 TYR H 198 HIS H 204 -1 O ASN H 201 N SER H 157 SHEET 3 AB1 3 THR H 209 VAL H 215 -1 O VAL H 211 N VAL H 202 SHEET 1 AB2 4 MET L 4 SER L 7 0 SHEET 2 AB2 4 VAL L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AB2 4 GLU L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 AB2 4 PHE L 62 SER L 65 -1 N SER L 63 O THR L 74 SHEET 1 AB3 6 PHE L 10 ALA L 13 0 SHEET 2 AB3 6 THR L 103 ILE L 107 1 O GLU L 106 N LEU L 11 SHEET 3 AB3 6 THR L 85 ARG L 90 -1 N TYR L 86 O THR L 103 SHEET 4 AB3 6 LEU L 33 GLN L 38 -1 N GLN L 38 O THR L 85 SHEET 5 AB3 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AB3 6 THR L 53 LEU L 54 -1 O THR L 53 N TYR L 49 SHEET 1 AB4 4 SER L 115 PHE L 119 0 SHEET 2 AB4 4 THR L 130 PHE L 140 -1 O LEU L 136 N PHE L 117 SHEET 3 AB4 4 TYR L 174 SER L 183 -1 O TYR L 174 N PHE L 140 SHEET 4 AB4 4 SER L 160 VAL L 164 -1 N GLN L 161 O THR L 179 SHEET 1 AB5 4 ALA L 154 LEU L 155 0 SHEET 2 AB5 4 ALA L 145 VAL L 151 -1 N VAL L 151 O ALA L 154 SHEET 3 AB5 4 VAL L 192 HIS L 199 -1 O ALA L 194 N LYS L 150 SHEET 4 AB5 4 VAL L 206 ASN L 211 -1 O VAL L 206 N VAL L 197 SSBOND 1 CYS A 336 CYS A 361 1555 1555 2.03 SSBOND 2 CYS A 379 CYS A 432 1555 1555 2.04 SSBOND 3 CYS A 391 CYS A 525 1555 1555 2.04 SSBOND 4 CYS A 480 CYS A 488 1555 1555 2.04 SSBOND 5 CYS H 22 CYS H 95 1555 1555 2.04 SSBOND 6 CYS H 144 CYS H 200 1555 1555 2.03 SSBOND 7 CYS L 23 CYS L 88 1555 1555 2.05 SSBOND 8 CYS L 135 CYS L 195 1555 1555 2.04 LINK ND2 ASN A 343 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O TYR A 396 NA NA A 601 1555 1555 3.17 LINK OD2 ASP A 398 NA NA A 601 1555 1555 2.88 LINK O VAL A 512 NA NA A 601 1555 1555 2.90 LINK OG SER A 514 NA NA A 601 1555 1555 2.60 CISPEP 1 PHE H 150 PRO H 151 0 -5.78 CISPEP 2 GLU H 152 PRO H 153 0 -0.28 CISPEP 3 SER L 7 PRO L 8 0 -7.51 CISPEP 4 PRO L 95 PRO L 96 0 -0.56 CISPEP 5 TYR L 141 PRO L 142 0 -0.86 CRYST1 84.565 148.875 145.093 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011825 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006717 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006892 0.00000