HEADER VIRAL PROTEIN 07-DEC-21 7QG7 TITLE SARS-COV-2 MACRODOMAIN NSP3B BOUND TO THE REMDESIVIR NUCLEOSIDE GS- TITLE 2 441524 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAPAIN-LIKE PROTEASE NSP3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NON-STRUCTURAL PROTEIN 3,NSP3,PL2-PRO,PAPAIN-LIKE COMPND 5 PROTEINASE,PL-PRO; COMPND 6 EC: 3.4.19.12,3.4.22.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 GENE: REP, 1A-1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: T7 EXPRESS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A(+) KEYWDS NSP3, MACRODOMAIN, SARS-COV-2, REMDESIVIR, GS-441524, COVID-19, VIRAL KEYWDS 2 PROTEIN, DRUG DISCOVERY EXPDTA X-RAY DIFFRACTION AUTHOR J.WOLLENHAUPT,V.LINHARD,S.SREERAMULU,M.S.WEISS,H.SCHWALBE REVDAT 4 31-JAN-24 7QG7 1 REMARK REVDAT 3 03-AUG-22 7QG7 1 JRNL REVDAT 2 27-JUL-22 7QG7 1 COMPND SOURCE JRNL DBREF REVDAT 2 2 1 SEQADV HETSYN REVDAT 1 15-DEC-21 7QG7 0 JRNL AUTH A.C.TSIKA,A.GALLO,N.K.FOURKIOTIS,A.I.ARGYRIOU,S.SREERAMULU, JRNL AUTH 2 F.LOHR,V.V.ROGOV,C.RICHTER,V.LINHARD,S.L.GANDE,N.ALTINCEKIC, JRNL AUTH 3 R.KRISHNATHAS,I.ELAMRI,H.SCHWALBE,J.WOLLENHAUPT,M.S.WEISS, JRNL AUTH 4 G.A.SPYROULIAS JRNL TITL BINDING ADAPTATION OF GS-441524 DIVERSIFIES MACRO DOMAINS JRNL TITL 2 AND DOWNREGULATES SARS-COV-2 DE-MARYLATION CAPACITY. JRNL REF J.MOL.BIOL. V. 434 67720 2022 JRNL REFN ESSN 1089-8638 JRNL PMID 35839840 JRNL DOI 10.1016/J.JMB.2022.167720 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 32947 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1647 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.5600 - 3.9300 1.00 2819 150 0.1605 0.1807 REMARK 3 2 3.9300 - 3.1200 1.00 2669 140 0.1543 0.1937 REMARK 3 3 3.1200 - 2.7300 1.00 2618 138 0.1792 0.2415 REMARK 3 4 2.7300 - 2.4800 1.00 2603 136 0.1807 0.2298 REMARK 3 5 2.4800 - 2.3000 1.00 2590 137 0.1724 0.2290 REMARK 3 6 2.3000 - 2.1700 1.00 2601 137 0.1733 0.2367 REMARK 3 7 2.1700 - 2.0600 1.00 2591 135 0.2041 0.2546 REMARK 3 8 2.0600 - 1.9700 1.00 2567 135 0.2153 0.2579 REMARK 3 9 1.9700 - 1.8900 1.00 2552 135 0.2326 0.3003 REMARK 3 10 1.8900 - 1.8300 1.00 2582 136 0.2552 0.2893 REMARK 3 11 1.8300 - 1.7700 1.00 2549 133 0.2941 0.3428 REMARK 3 12 1.7700 - 1.7200 0.99 2559 135 0.3181 0.3547 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.238 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.454 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2777 REMARK 3 ANGLE : 0.787 3779 REMARK 3 CHIRALITY : 0.051 439 REMARK 3 PLANARITY : 0.004 514 REMARK 3 DIHEDRAL : 20.552 1027 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5158 -29.1480 9.9331 REMARK 3 T TENSOR REMARK 3 T11: 0.1798 T22: 0.1652 REMARK 3 T33: 0.2389 T12: 0.0203 REMARK 3 T13: -0.0353 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 6.9422 L22: 7.7955 REMARK 3 L33: 7.8952 L12: -1.5430 REMARK 3 L13: -2.3095 L23: 0.2757 REMARK 3 S TENSOR REMARK 3 S11: 0.1257 S12: -0.1196 S13: -0.3024 REMARK 3 S21: 0.1593 S22: -0.1181 S23: -0.6483 REMARK 3 S31: 0.2050 S32: 0.6864 S33: -0.0800 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8931 -16.5633 17.4645 REMARK 3 T TENSOR REMARK 3 T11: 0.1709 T22: 0.1494 REMARK 3 T33: 0.0706 T12: -0.0210 REMARK 3 T13: -0.0090 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 3.4323 L22: 7.7961 REMARK 3 L33: 4.1522 L12: -1.4933 REMARK 3 L13: -1.2237 L23: -1.5608 REMARK 3 S TENSOR REMARK 3 S11: 0.1049 S12: -0.0486 S13: -0.0894 REMARK 3 S21: 0.4345 S22: -0.1413 S23: 0.1331 REMARK 3 S31: -0.0182 S32: 0.1894 S33: 0.0265 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3311 -15.3765 22.3259 REMARK 3 T TENSOR REMARK 3 T11: 0.2618 T22: 0.2029 REMARK 3 T33: 0.1848 T12: 0.0111 REMARK 3 T13: 0.0963 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 1.6118 L22: 4.0974 REMARK 3 L33: 2.9742 L12: -0.7395 REMARK 3 L13: 0.0995 L23: 3.2788 REMARK 3 S TENSOR REMARK 3 S11: -0.0579 S12: -0.2219 S13: 0.0110 REMARK 3 S21: 0.5659 S22: 0.0636 S23: 0.2580 REMARK 3 S31: 0.0368 S32: 0.0937 S33: 0.0386 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2309 -2.9141 21.1469 REMARK 3 T TENSOR REMARK 3 T11: 0.5942 T22: 0.2290 REMARK 3 T33: 0.2256 T12: -0.0366 REMARK 3 T13: -0.0313 T23: -0.0790 REMARK 3 L TENSOR REMARK 3 L11: 1.1331 L22: 3.1080 REMARK 3 L33: 1.1232 L12: -1.1742 REMARK 3 L13: -0.4313 L23: 1.7278 REMARK 3 S TENSOR REMARK 3 S11: -0.0110 S12: -0.2131 S13: 0.2739 REMARK 3 S21: 0.4228 S22: -0.0676 S23: -0.2297 REMARK 3 S31: -1.0680 S32: 0.2129 S33: -0.0015 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5887 -9.5797 16.8963 REMARK 3 T TENSOR REMARK 3 T11: 0.2410 T22: 0.1947 REMARK 3 T33: 0.1401 T12: -0.0182 REMARK 3 T13: -0.0481 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 3.5403 L22: 1.2744 REMARK 3 L33: 2.6936 L12: 0.8560 REMARK 3 L13: -0.4612 L23: 1.2912 REMARK 3 S TENSOR REMARK 3 S11: 0.0147 S12: -0.3539 S13: 0.2069 REMARK 3 S21: 0.4804 S22: -0.1181 S23: -0.2083 REMARK 3 S31: -0.2435 S32: 0.4118 S33: 0.0769 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3561 -16.3017 4.5004 REMARK 3 T TENSOR REMARK 3 T11: 0.1486 T22: 0.1652 REMARK 3 T33: 0.1293 T12: 0.0089 REMARK 3 T13: 0.0120 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 2.7164 L22: 5.8470 REMARK 3 L33: 3.3540 L12: -1.0687 REMARK 3 L13: 0.5938 L23: -0.3979 REMARK 3 S TENSOR REMARK 3 S11: 0.1194 S12: 0.1489 S13: 0.0809 REMARK 3 S21: -0.4382 S22: -0.2472 S23: 0.0769 REMARK 3 S31: -0.0519 S32: 0.0637 S33: 0.1105 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 158 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.7096 -30.9062 -0.9131 REMARK 3 T TENSOR REMARK 3 T11: 0.3331 T22: 0.3051 REMARK 3 T33: 0.2825 T12: -0.0220 REMARK 3 T13: -0.0694 T23: -0.0640 REMARK 3 L TENSOR REMARK 3 L11: 6.9379 L22: 2.1310 REMARK 3 L33: 7.7931 L12: -0.5210 REMARK 3 L13: -3.1844 L23: -0.8940 REMARK 3 S TENSOR REMARK 3 S11: -0.0960 S12: 0.3459 S13: -0.2635 REMARK 3 S21: -0.5770 S22: -0.3059 S23: 0.5027 REMARK 3 S31: 0.6020 S32: -0.6982 S33: 0.3995 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8757 -19.1756 -33.1951 REMARK 3 T TENSOR REMARK 3 T11: 0.2100 T22: 0.1989 REMARK 3 T33: 0.1193 T12: 0.0086 REMARK 3 T13: -0.0340 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 4.5346 L22: 6.6328 REMARK 3 L33: 5.8206 L12: 0.3991 REMARK 3 L13: 0.5170 L23: 2.0070 REMARK 3 S TENSOR REMARK 3 S11: 0.1004 S12: 0.3092 S13: 0.3131 REMARK 3 S21: -0.3689 S22: -0.2779 S23: 0.4771 REMARK 3 S31: -0.4506 S32: -0.0613 S33: 0.1516 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2191 -12.8004 -24.5101 REMARK 3 T TENSOR REMARK 3 T11: 0.1889 T22: 0.1296 REMARK 3 T33: 0.1990 T12: 0.0279 REMARK 3 T13: -0.0108 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 7.5922 L22: 4.7703 REMARK 3 L33: 8.6346 L12: 1.4814 REMARK 3 L13: 0.7581 L23: 2.1084 REMARK 3 S TENSOR REMARK 3 S11: 0.0333 S12: 0.2180 S13: 0.7357 REMARK 3 S21: -0.2388 S22: -0.1501 S23: -0.0890 REMARK 3 S31: -0.4423 S32: -0.3028 S33: 0.0822 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 39 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9279 -8.9757 -14.8860 REMARK 3 T TENSOR REMARK 3 T11: 0.1569 T22: 0.1497 REMARK 3 T33: 0.2389 T12: -0.0005 REMARK 3 T13: -0.0550 T23: -0.0359 REMARK 3 L TENSOR REMARK 3 L11: 1.1186 L22: 3.4217 REMARK 3 L33: 4.6565 L12: -0.1211 REMARK 3 L13: 1.9006 L23: 0.1959 REMARK 3 S TENSOR REMARK 3 S11: -0.1792 S12: -0.1107 S13: 0.2471 REMARK 3 S21: 0.0836 S22: 0.0533 S23: -0.1257 REMARK 3 S31: -0.3649 S32: -0.0951 S33: 0.1128 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0224 -20.9733 -13.9120 REMARK 3 T TENSOR REMARK 3 T11: 0.1618 T22: 0.1645 REMARK 3 T33: 0.1986 T12: -0.0282 REMARK 3 T13: -0.0384 T23: -0.0339 REMARK 3 L TENSOR REMARK 3 L11: 5.6809 L22: 7.9244 REMARK 3 L33: 7.3714 L12: -5.6809 REMARK 3 L13: 3.4104 L23: -4.4475 REMARK 3 S TENSOR REMARK 3 S11: -0.2416 S12: -0.2374 S13: 0.0127 REMARK 3 S21: 0.4322 S22: 0.3118 S23: 0.0781 REMARK 3 S31: 0.0139 S32: 0.1025 S33: -0.0320 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 106 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4069 -26.3532 -15.2664 REMARK 3 T TENSOR REMARK 3 T11: 0.2073 T22: 0.2076 REMARK 3 T33: 0.1517 T12: -0.0898 REMARK 3 T13: 0.0025 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 8.4521 L22: 3.5426 REMARK 3 L33: 7.3745 L12: -1.5110 REMARK 3 L13: 2.5140 L23: 0.0101 REMARK 3 S TENSOR REMARK 3 S11: 0.0020 S12: -0.4451 S13: -0.2529 REMARK 3 S21: 0.4290 S22: -0.0866 S23: 0.1201 REMARK 3 S31: 0.5693 S32: -0.6511 S33: 0.0134 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 119 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7626 -21.9108 -22.1787 REMARK 3 T TENSOR REMARK 3 T11: 0.1431 T22: 0.1016 REMARK 3 T33: 0.1054 T12: -0.0234 REMARK 3 T13: 0.0120 T23: -0.0270 REMARK 3 L TENSOR REMARK 3 L11: 7.7107 L22: 4.3648 REMARK 3 L33: 4.1660 L12: -4.2316 REMARK 3 L13: 1.7489 L23: -0.2427 REMARK 3 S TENSOR REMARK 3 S11: 0.0806 S12: 0.1069 S13: 0.0128 REMARK 3 S21: -0.0939 S22: -0.0230 S23: -0.1032 REMARK 3 S31: 0.1572 S32: 0.1312 S33: -0.0697 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 136 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2002 -32.4951 -22.8899 REMARK 3 T TENSOR REMARK 3 T11: 0.2865 T22: 0.1689 REMARK 3 T33: 0.2514 T12: 0.0045 REMARK 3 T13: -0.0834 T23: -0.0370 REMARK 3 L TENSOR REMARK 3 L11: 2.2916 L22: 2.9888 REMARK 3 L33: 6.8615 L12: -0.8189 REMARK 3 L13: -3.5989 L23: -0.0379 REMARK 3 S TENSOR REMARK 3 S11: 0.1682 S12: 0.2094 S13: -0.8202 REMARK 3 S21: 0.1607 S22: 0.0259 S23: 0.1911 REMARK 3 S31: 0.9396 S32: -0.0794 S33: -0.1961 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 147 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2877 -22.8896 -27.9887 REMARK 3 T TENSOR REMARK 3 T11: 0.1800 T22: 0.1009 REMARK 3 T33: 0.1473 T12: -0.0217 REMARK 3 T13: -0.0340 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 6.1798 L22: 5.0460 REMARK 3 L33: 6.5117 L12: -2.2879 REMARK 3 L13: 0.4942 L23: 1.6619 REMARK 3 S TENSOR REMARK 3 S11: -0.0237 S12: 0.1944 S13: -0.1147 REMARK 3 S21: -0.1659 S22: -0.0086 S23: 0.1761 REMARK 3 S31: 0.0824 S32: -0.3031 S33: 0.0884 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 158 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7874 -32.1179 -33.1753 REMARK 3 T TENSOR REMARK 3 T11: 0.3335 T22: 0.3233 REMARK 3 T33: 0.3919 T12: 0.0710 REMARK 3 T13: 0.0153 T23: -0.1273 REMARK 3 L TENSOR REMARK 3 L11: 2.6060 L22: 5.7107 REMARK 3 L33: 8.4311 L12: 3.5361 REMARK 3 L13: -0.3335 L23: -0.5360 REMARK 3 S TENSOR REMARK 3 S11: -0.3451 S12: 0.5866 S13: -1.0091 REMARK 3 S21: -0.2034 S22: 0.6102 S23: -0.9716 REMARK 3 S31: 0.7035 S32: 0.4707 S33: -0.1718 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QG7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1292110679. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32987 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 45.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.86 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 12.65 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6YWM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PROPANE/HCL PH 7.0, 2.2 REMARK 280 M DL-MALIC ACID PH 7.0, EG AS CRYOPROTECTANT, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.93500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.81000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.93500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 67.81000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 HIS A 1 REMARK 465 MET A 2 REMARK 465 GLY B 0 REMARK 465 HIS B 1 REMARK 465 MET B 2 REMARK 465 LYS B 172 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 5 65.83 -100.73 REMARK 500 THR A 71 -79.47 -86.72 REMARK 500 HIS A 86 -127.03 56.79 REMARK 500 HIS B 86 -128.43 51.65 REMARK 500 REMARK 500 REMARK: NULL DBREF 7QG7 A 3 172 UNP P0DTD1 R1AB_SARS2 1025 1194 DBREF 7QG7 B 3 172 UNP P0DTD1 R1AB_SARS2 1025 1194 SEQADV 7QG7 GLY A 0 UNP P0DTD1 EXPRESSION TAG SEQADV 7QG7 HIS A 1 UNP P0DTD1 EXPRESSION TAG SEQADV 7QG7 MET A 2 UNP P0DTD1 EXPRESSION TAG SEQADV 7QG7 GLY B 0 UNP P0DTD1 EXPRESSION TAG SEQADV 7QG7 HIS B 1 UNP P0DTD1 EXPRESSION TAG SEQADV 7QG7 MET B 2 UNP P0DTD1 EXPRESSION TAG SEQRES 1 A 173 GLY HIS MET VAL ASN SER PHE SER GLY TYR LEU LYS LEU SEQRES 2 A 173 THR ASP ASN VAL TYR ILE LYS ASN ALA ASP ILE VAL GLU SEQRES 3 A 173 GLU ALA LYS LYS VAL LYS PRO THR VAL VAL VAL ASN ALA SEQRES 4 A 173 ALA ASN VAL TYR LEU LYS HIS GLY GLY GLY VAL ALA GLY SEQRES 5 A 173 ALA LEU ASN LYS ALA THR ASN ASN ALA MET GLN VAL GLU SEQRES 6 A 173 SER ASP ASP TYR ILE ALA THR ASN GLY PRO LEU LYS VAL SEQRES 7 A 173 GLY GLY SER CYS VAL LEU SER GLY HIS ASN LEU ALA LYS SEQRES 8 A 173 HIS CYS LEU HIS VAL VAL GLY PRO ASN VAL ASN LYS GLY SEQRES 9 A 173 GLU ASP ILE GLN LEU LEU LYS SER ALA TYR GLU ASN PHE SEQRES 10 A 173 ASN GLN HIS GLU VAL LEU LEU ALA PRO LEU LEU SER ALA SEQRES 11 A 173 GLY ILE PHE GLY ALA ASP PRO ILE HIS SER LEU ARG VAL SEQRES 12 A 173 CYS VAL ASP THR VAL ARG THR ASN VAL TYR LEU ALA VAL SEQRES 13 A 173 PHE ASP LYS ASN LEU TYR ASP LYS LEU VAL SER SER PHE SEQRES 14 A 173 LEU GLU MET LYS SEQRES 1 B 173 GLY HIS MET VAL ASN SER PHE SER GLY TYR LEU LYS LEU SEQRES 2 B 173 THR ASP ASN VAL TYR ILE LYS ASN ALA ASP ILE VAL GLU SEQRES 3 B 173 GLU ALA LYS LYS VAL LYS PRO THR VAL VAL VAL ASN ALA SEQRES 4 B 173 ALA ASN VAL TYR LEU LYS HIS GLY GLY GLY VAL ALA GLY SEQRES 5 B 173 ALA LEU ASN LYS ALA THR ASN ASN ALA MET GLN VAL GLU SEQRES 6 B 173 SER ASP ASP TYR ILE ALA THR ASN GLY PRO LEU LYS VAL SEQRES 7 B 173 GLY GLY SER CYS VAL LEU SER GLY HIS ASN LEU ALA LYS SEQRES 8 B 173 HIS CYS LEU HIS VAL VAL GLY PRO ASN VAL ASN LYS GLY SEQRES 9 B 173 GLU ASP ILE GLN LEU LEU LYS SER ALA TYR GLU ASN PHE SEQRES 10 B 173 ASN GLN HIS GLU VAL LEU LEU ALA PRO LEU LEU SER ALA SEQRES 11 B 173 GLY ILE PHE GLY ALA ASP PRO ILE HIS SER LEU ARG VAL SEQRES 12 B 173 CYS VAL ASP THR VAL ARG THR ASN VAL TYR LEU ALA VAL SEQRES 13 B 173 PHE ASP LYS ASN LEU TYR ASP LYS LEU VAL SER SER PHE SEQRES 14 B 173 LEU GLU MET LYS HET U08 A 201 21 HET EDO A 202 4 HET EDO A 203 4 HET U08 B 201 21 HET EDO B 202 4 HET EDO B 203 8 HET EDO B 204 4 HETNAM U08 (2~{R},3~{R},4~{S},5~{R})-2-(4-AZANYLPYRROLO[2,1-F][1, HETNAM 2 U08 2,4]TRIAZIN-7-YL)-5-(HYDROXYMETHYL)-3,4-BIS(OXIDANYL) HETNAM 3 U08 OXOLANE-2-CARBONITRILE HETNAM EDO 1,2-ETHANEDIOL HETSYN U08 REMDESIVIR, REACTED FORM HETSYN EDO ETHYLENE GLYCOL FORMUL 3 U08 2(C12 H13 N5 O4) FORMUL 4 EDO 5(C2 H6 O2) FORMUL 10 HOH *158(H2 O) HELIX 1 AA1 ASP A 22 LYS A 31 1 10 HELIX 2 AA2 GLY A 47 THR A 57 1 11 HELIX 3 AA3 ASN A 59 GLY A 73 1 15 HELIX 4 AA4 ASN A 99 GLY A 103 5 5 HELIX 5 AA5 GLN A 107 ASN A 115 1 9 HELIX 6 AA6 PHE A 116 HIS A 119 5 4 HELIX 7 AA7 ALA A 129 GLY A 133 5 5 HELIX 8 AA8 ASP A 135 VAL A 147 1 13 HELIX 9 AA9 ASP A 157 LYS A 172 1 16 HELIX 10 AB1 ASP B 22 LYS B 31 1 10 HELIX 11 AB2 GLY B 47 THR B 57 1 11 HELIX 12 AB3 ASN B 59 GLY B 73 1 15 HELIX 13 AB4 ASN B 99 GLY B 103 5 5 HELIX 14 AB5 GLN B 107 ASN B 115 1 9 HELIX 15 AB6 PHE B 116 HIS B 119 5 4 HELIX 16 AB7 ALA B 129 GLY B 133 5 5 HELIX 17 AB8 ASP B 135 VAL B 147 1 13 HELIX 18 AB9 ASP B 157 MET B 171 1 15 SHEET 1 AA1 4 LEU A 10 LYS A 11 0 SHEET 2 AA1 4 VAL A 16 ASN A 20 -1 O ILE A 18 N LEU A 10 SHEET 3 AA1 4 ASN A 150 VAL A 155 1 O LEU A 153 N TYR A 17 SHEET 4 AA1 4 VAL A 121 ALA A 124 1 N LEU A 122 O TYR A 152 SHEET 1 AA2 3 VAL A 34 ALA A 38 0 SHEET 2 AA2 3 HIS A 91 VAL A 95 1 O VAL A 95 N ASN A 37 SHEET 3 AA2 3 SER A 80 SER A 84 -1 N LEU A 83 O CYS A 92 SHEET 1 AA3 4 LEU B 10 LYS B 11 0 SHEET 2 AA3 4 VAL B 16 ASN B 20 -1 O ILE B 18 N LEU B 10 SHEET 3 AA3 4 ASN B 150 VAL B 155 1 O LEU B 153 N TYR B 17 SHEET 4 AA3 4 VAL B 121 ALA B 124 1 N LEU B 122 O TYR B 152 SHEET 1 AA4 3 VAL B 34 ALA B 39 0 SHEET 2 AA4 3 HIS B 91 VAL B 96 1 O LEU B 93 N VAL B 35 SHEET 3 AA4 3 SER B 80 SER B 84 -1 N LEU B 83 O CYS B 92 CRYST1 29.840 73.870 135.620 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033512 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013537 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007374 0.00000