HEADER PEPTIDE BINDING PROTEIN 14-DEC-21 7QI0 TITLE CRYSTAL STRUCTURE OF KLK6 IN COMPLEX WITH COMPOUND DKFZ918 COMPND MOL_ID: 1; COMPND 2 MOLECULE: KALLIKREIN-6; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NEUROSIN,PROTEASE M,SP59,SERINE PROTEASE 18,SERINE PROTEASE COMPND 5 9,ZYME; COMPND 6 EC: 3.4.21.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KLK6, PRSS18, PRSS9; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: EXPI293F; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PXLG KEYWDS SERINE PROTEASES, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.K.A.JAGTAP,A.BAUMANN,J.LOHBECK,D.ISAK,A.MILLER,J.HENNIG REVDAT 2 31-JAN-24 7QI0 1 REMARK REVDAT 1 23-NOV-22 7QI0 0 JRNL AUTH A.BAUMANN,D.ISAK,J.LOHBECK,P.K.A.JAGTAP,J.HENNIG,A.K.MILLER JRNL TITL SCALABLE SYNTHESIS AND STRUCTURAL CHARACTERIZATION OF JRNL TITL 2 REVERSIBLE KLK6 INHIBITORS. JRNL REF RSC ADV V. 12 26989 2022 JRNL REFN ESSN 2046-2069 JRNL PMID 36320846 JRNL DOI 10.1039/D2RA04670A REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2-4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 32008 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1599 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7849 -4.4481 7.0348 REMARK 3 T TENSOR REMARK 3 T11: 0.3915 T22: 0.3427 REMARK 3 T33: 0.3362 T12: 0.1624 REMARK 3 T13: -0.1335 T23: -0.0743 REMARK 3 L TENSOR REMARK 3 L11: 3.9682 L22: 4.9092 REMARK 3 L33: 3.8555 L12: -0.2842 REMARK 3 L13: 0.7666 L23: 1.0322 REMARK 3 S TENSOR REMARK 3 S11: 0.1332 S12: 0.1712 S13: -0.1717 REMARK 3 S21: 0.6385 S22: 0.2655 S23: -0.7233 REMARK 3 S31: 0.6973 S32: 0.6965 S33: -0.2145 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7001 8.3988 7.1457 REMARK 3 T TENSOR REMARK 3 T11: 0.2578 T22: 0.3312 REMARK 3 T33: 0.3234 T12: 0.0148 REMARK 3 T13: -0.0595 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 5.6707 L22: 6.0066 REMARK 3 L33: 3.6083 L12: 0.4109 REMARK 3 L13: 1.0268 L23: 1.2625 REMARK 3 S TENSOR REMARK 3 S11: -0.1322 S12: 0.3440 S13: 0.6122 REMARK 3 S21: 0.3543 S22: 0.2717 S23: -0.5465 REMARK 3 S31: -0.1191 S32: 0.6116 S33: -0.1022 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 16 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.0742 14.0106 27.5643 REMARK 3 T TENSOR REMARK 3 T11: 0.2917 T22: 0.4623 REMARK 3 T33: 0.3171 T12: -0.1044 REMARK 3 T13: 0.0122 T23: 0.0408 REMARK 3 L TENSOR REMARK 3 L11: 4.7722 L22: 4.1066 REMARK 3 L33: 4.6323 L12: 0.3943 REMARK 3 L13: -0.6796 L23: -0.9810 REMARK 3 S TENSOR REMARK 3 S11: 0.0908 S12: -0.9865 S13: -0.1719 REMARK 3 S21: 0.0402 S22: -0.0363 S23: -0.6106 REMARK 3 S31: -0.4095 S32: 0.7885 S33: 0.0276 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 55 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.7302 18.2400 33.6222 REMARK 3 T TENSOR REMARK 3 T11: 0.4120 T22: 0.5463 REMARK 3 T33: 0.2894 T12: -0.0805 REMARK 3 T13: 0.0000 T23: -0.0820 REMARK 3 L TENSOR REMARK 3 L11: 5.3809 L22: 2.7754 REMARK 3 L33: 4.5292 L12: 0.0576 REMARK 3 L13: -0.9345 L23: 0.2135 REMARK 3 S TENSOR REMARK 3 S11: 0.0663 S12: -1.3155 S13: 0.4813 REMARK 3 S21: 0.3077 S22: -0.0096 S23: -0.1211 REMARK 3 S31: -0.7426 S32: 0.3563 S33: -0.1354 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 69 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.6471 21.9806 29.9373 REMARK 3 T TENSOR REMARK 3 T11: 0.6360 T22: 0.7344 REMARK 3 T33: 0.4156 T12: -0.2750 REMARK 3 T13: 0.0650 T23: -0.1487 REMARK 3 L TENSOR REMARK 3 L11: 6.5651 L22: 3.4996 REMARK 3 L33: 1.8877 L12: 0.2974 REMARK 3 L13: -0.7977 L23: 0.2344 REMARK 3 S TENSOR REMARK 3 S11: 0.2423 S12: -1.0701 S13: 0.6572 REMARK 3 S21: 0.0587 S22: 0.0738 S23: -0.5065 REMARK 3 S31: -1.1020 S32: 0.9779 S33: -0.1630 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.2208 15.0943 24.1342 REMARK 3 T TENSOR REMARK 3 T11: 0.3049 T22: 0.2080 REMARK 3 T33: 0.2482 T12: -0.0000 REMARK 3 T13: 0.0168 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 6.1255 L22: 2.3676 REMARK 3 L33: 3.6977 L12: 1.0698 REMARK 3 L13: -1.1533 L23: 0.2156 REMARK 3 S TENSOR REMARK 3 S11: 0.0395 S12: -0.2513 S13: 0.2205 REMARK 3 S21: -0.1756 S22: 0.0808 S23: -0.0035 REMARK 3 S31: -0.4033 S32: 0.1704 S33: -0.0385 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 124 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.3647 2.3662 15.8785 REMARK 3 T TENSOR REMARK 3 T11: 0.4114 T22: 0.3297 REMARK 3 T33: 0.5797 T12: -0.0545 REMARK 3 T13: 0.1449 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 7.4127 L22: 2.6820 REMARK 3 L33: 4.5159 L12: 0.5975 REMARK 3 L13: -0.0490 L23: -0.2704 REMARK 3 S TENSOR REMARK 3 S11: -0.3924 S12: 0.5572 S13: -1.4316 REMARK 3 S21: -0.3681 S22: 0.1533 S23: -0.3703 REMARK 3 S31: 0.8188 S32: 0.6182 S33: 0.2760 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 141 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.1516 7.4082 36.9555 REMARK 3 T TENSOR REMARK 3 T11: 0.4451 T22: 1.4287 REMARK 3 T33: 0.7018 T12: 0.0928 REMARK 3 T13: -0.1321 T23: 0.2930 REMARK 3 L TENSOR REMARK 3 L11: 0.1103 L22: 4.4603 REMARK 3 L33: 7.2792 L12: 0.4613 REMARK 3 L13: -0.5944 L23: -0.5103 REMARK 3 S TENSOR REMARK 3 S11: 0.4199 S12: -2.0570 S13: -1.1039 REMARK 3 S21: 1.1191 S22: -0.0547 S23: -1.0787 REMARK 3 S31: 0.2253 S32: 1.3158 S33: 0.7856 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.5075 -5.2414 24.3115 REMARK 3 T TENSOR REMARK 3 T11: 0.4850 T22: 0.0254 REMARK 3 T33: 1.1871 T12: 0.0425 REMARK 3 T13: 0.2695 T23: 0.2964 REMARK 3 L TENSOR REMARK 3 L11: 2.9945 L22: 2.6944 REMARK 3 L33: 1.4838 L12: 1.6627 REMARK 3 L13: -1.0950 L23: -0.5415 REMARK 3 S TENSOR REMARK 3 S11: -1.0915 S12: -0.2644 S13: -3.0223 REMARK 3 S21: -0.2957 S22: 0.4784 S23: -0.5930 REMARK 3 S31: 0.8065 S32: 1.2421 S33: 0.4114 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 185 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.7994 -1.0824 30.4089 REMARK 3 T TENSOR REMARK 3 T11: 0.4177 T22: 0.7989 REMARK 3 T33: 0.7432 T12: 0.1309 REMARK 3 T13: 0.0476 T23: 0.3970 REMARK 3 L TENSOR REMARK 3 L11: 3.1203 L22: 6.2044 REMARK 3 L33: 1.1061 L12: -3.6743 REMARK 3 L13: 1.5649 L23: -1.2279 REMARK 3 S TENSOR REMARK 3 S11: 0.0873 S12: -1.1165 S13: -1.2252 REMARK 3 S21: 0.1323 S22: -0.4021 S23: -0.4454 REMARK 3 S31: 0.5985 S32: 0.8088 S33: 0.2077 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 200 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.7582 5.4381 22.4167 REMARK 3 T TENSOR REMARK 3 T11: 0.2486 T22: 0.2633 REMARK 3 T33: 0.3623 T12: 0.0036 REMARK 3 T13: 0.0780 T23: 0.1185 REMARK 3 L TENSOR REMARK 3 L11: 4.1785 L22: 4.6952 REMARK 3 L33: 3.8413 L12: 1.6545 REMARK 3 L13: -1.0716 L23: 0.6196 REMARK 3 S TENSOR REMARK 3 S11: -0.2207 S12: -0.2282 S13: -0.8179 REMARK 3 S21: -0.4003 S22: 0.0087 S23: -0.2193 REMARK 3 S31: 0.1680 S32: 0.3622 S33: 0.1092 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QI0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1292119592. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32018 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 37.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.498 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.24 REMARK 200 R MERGE FOR SHELL (I) : 1.25400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.870 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3VFE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.20 M TRIMETHYLAMINE N-OXIDE, 0.1 M REMARK 280 TRIS-HCL PH8.5, 20% PEG MME 2000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.43000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 72 REMARK 465 LEU A 73 REMARK 465 GLY A 74 REMARK 465 GLN A 75 REMARK 465 GLN A 76 REMARK 465 LYS A 247 REMARK 465 LYS B 247 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 24 CG CD CE NZ REMARK 470 ARG A 110 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 113 CG CD CE NZ REMARK 470 LEU A 114 CG CD1 CD2 REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 GLN A 119 CG CD OE1 NE2 REMARK 470 ASP A 146 CG OD1 OD2 REMARK 470 ASP A 150 CG OD1 OD2 REMARK 470 GLU A 186 CG CD OE1 OE2 REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 TYR A 188 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 GLU A 225 CD OE1 OE2 REMARK 470 GLN A 241 CG CD OE1 NE2 REMARK 470 LYS B 113 CG CD CE NZ REMARK 470 GLU B 116 CG CD OE1 OE2 REMARK 470 GLN B 132 CG CD OE1 NE2 REMARK 470 LYS B 143 CG CD CE NZ REMARK 470 LYS B 187 CG CD CE NZ REMARK 470 LYS B 224 CG CD CE NZ REMARK 470 GLU B 225 CG CD OE1 OE2 REMARK 470 LYS B 226 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY B 174 O HOH B 401 1.74 REMARK 500 O HOH B 401 O HOH B 478 1.97 REMARK 500 OE2 GLU B 81 O HOH B 402 1.98 REMARK 500 OG SER A 115 O HOH A 401 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 16 CA - CB - CG ANGL. DEV. = 18.3 DEGREES REMARK 500 LEU A 33 CB - CG - CD2 ANGL. DEV. = -12.3 DEGREES REMARK 500 LEU B 16 CA - CB - CG ANGL. DEV. = 19.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 27 52.27 -143.05 REMARK 500 HIS A 48 143.68 -173.63 REMARK 500 SER A 115 41.11 -149.20 REMARK 500 GLU A 116 -30.67 62.60 REMARK 500 ASP A 146 16.21 -69.57 REMARK 500 SER A 216 -64.45 -126.84 REMARK 500 HIS B 71 -54.78 -127.54 REMARK 500 HIS B 99 13.49 59.71 REMARK 500 SER B 197 133.70 -39.14 REMARK 500 ASP B 205 17.83 56.93 REMARK 500 SER B 216 -61.50 -125.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 125 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 7QI0 A 16 247 UNP Q92876 KLK6_HUMAN 22 244 DBREF 7QI0 B 16 247 UNP Q92876 KLK6_HUMAN 22 244 SEQADV 7QI0 GLY A 74 UNP Q92876 ARG 78 ENGINEERED MUTATION SEQADV 7QI0 GLN A 76 UNP Q92876 ARG 80 ENGINEERED MUTATION SEQADV 7QI0 GLN A 132 UNP Q92876 ASN 134 ENGINEERED MUTATION SEQADV 7QI0 GLY B 74 UNP Q92876 ARG 78 ENGINEERED MUTATION SEQADV 7QI0 GLN B 76 UNP Q92876 ARG 80 ENGINEERED MUTATION SEQADV 7QI0 GLN B 132 UNP Q92876 ASN 134 ENGINEERED MUTATION SEQRES 1 A 223 LEU VAL HIS GLY GLY PRO CYS ASP LYS THR SER HIS PRO SEQRES 2 A 223 TYR GLN ALA ALA LEU TYR THR SER GLY HIS LEU LEU CYS SEQRES 3 A 223 GLY GLY VAL LEU ILE HIS PRO LEU TRP VAL LEU THR ALA SEQRES 4 A 223 ALA HIS CYS LYS LYS PRO ASN LEU GLN VAL PHE LEU GLY SEQRES 5 A 223 LYS HIS ASN LEU GLY GLN GLN GLU SER SER GLN GLU GLN SEQRES 6 A 223 SER SER VAL VAL ARG ALA VAL ILE HIS PRO ASP TYR ASP SEQRES 7 A 223 ALA ALA SER HIS ASP GLN ASP ILE MET LEU LEU ARG LEU SEQRES 8 A 223 ALA ARG PRO ALA LYS LEU SER GLU LEU ILE GLN PRO LEU SEQRES 9 A 223 PRO LEU GLU ARG ASP CYS SER ALA GLN THR THR SER CYS SEQRES 10 A 223 HIS ILE LEU GLY TRP GLY LYS THR ALA ASP GLY ASP PHE SEQRES 11 A 223 PRO ASP THR ILE GLN CYS ALA TYR ILE HIS LEU VAL SER SEQRES 12 A 223 ARG GLU GLU CYS GLU HIS ALA TYR PRO GLY GLN ILE THR SEQRES 13 A 223 GLN ASN MET LEU CYS ALA GLY ASP GLU LYS TYR GLY LYS SEQRES 14 A 223 ASP SER CYS GLN GLY ASP SER GLY GLY PRO LEU VAL CYS SEQRES 15 A 223 GLY ASP HIS LEU ARG GLY LEU VAL SER TRP GLY ASN ILE SEQRES 16 A 223 PRO CYS GLY SER LYS GLU LYS PRO GLY VAL TYR THR ASN SEQRES 17 A 223 VAL CYS ARG TYR THR ASN TRP ILE GLN LYS THR ILE GLN SEQRES 18 A 223 ALA LYS SEQRES 1 B 223 LEU VAL HIS GLY GLY PRO CYS ASP LYS THR SER HIS PRO SEQRES 2 B 223 TYR GLN ALA ALA LEU TYR THR SER GLY HIS LEU LEU CYS SEQRES 3 B 223 GLY GLY VAL LEU ILE HIS PRO LEU TRP VAL LEU THR ALA SEQRES 4 B 223 ALA HIS CYS LYS LYS PRO ASN LEU GLN VAL PHE LEU GLY SEQRES 5 B 223 LYS HIS ASN LEU GLY GLN GLN GLU SER SER GLN GLU GLN SEQRES 6 B 223 SER SER VAL VAL ARG ALA VAL ILE HIS PRO ASP TYR ASP SEQRES 7 B 223 ALA ALA SER HIS ASP GLN ASP ILE MET LEU LEU ARG LEU SEQRES 8 B 223 ALA ARG PRO ALA LYS LEU SER GLU LEU ILE GLN PRO LEU SEQRES 9 B 223 PRO LEU GLU ARG ASP CYS SER ALA GLN THR THR SER CYS SEQRES 10 B 223 HIS ILE LEU GLY TRP GLY LYS THR ALA ASP GLY ASP PHE SEQRES 11 B 223 PRO ASP THR ILE GLN CYS ALA TYR ILE HIS LEU VAL SER SEQRES 12 B 223 ARG GLU GLU CYS GLU HIS ALA TYR PRO GLY GLN ILE THR SEQRES 13 B 223 GLN ASN MET LEU CYS ALA GLY ASP GLU LYS TYR GLY LYS SEQRES 14 B 223 ASP SER CYS GLN GLY ASP SER GLY GLY PRO LEU VAL CYS SEQRES 15 B 223 GLY ASP HIS LEU ARG GLY LEU VAL SER TRP GLY ASN ILE SEQRES 16 B 223 PRO CYS GLY SER LYS GLU LYS PRO GLY VAL TYR THR ASN SEQRES 17 B 223 VAL CYS ARG TYR THR ASN TRP ILE GLN LYS THR ILE GLN SEQRES 18 B 223 ALA LYS HET C9I A 301 31 HET C9I B 301 31 HETNAM C9I (5~{R})-3-(6-CARBAMIMIDOYLPYRIDIN-3-YL)-~{N}-[(1~{S})- HETNAM 2 C9I 1-NAPHTHALEN-1-YLPROPYL]-2-OXIDANYLIDENE-1,3- HETNAM 3 C9I OXAZOLIDINE-5-CARBOXAMIDE FORMUL 3 C9I 2(C23 H23 N5 O3) FORMUL 5 HOH *158(H2 O) HELIX 1 AA1 ALA A 55 LYS A 59 5 5 HELIX 2 AA2 SER A 164 TYR A 172 1 9 HELIX 3 AA3 TYR A 236 ALA A 246 1 11 HELIX 4 AA4 ALA B 55 LYS B 59 5 5 HELIX 5 AA5 SER B 164 TYR B 172 1 9 HELIX 6 AA6 TYR B 236 ALA B 246 1 11 SHEET 1 AA1 8 GLY A 20 PRO A 21 0 SHEET 2 AA1 8 GLN A 156 VAL A 163 -1 O CYS A 157 N GLY A 20 SHEET 3 AA1 8 MET A 180 GLY A 184 -1 O GLY A 184 N HIS A 161 SHEET 4 AA1 8 GLY A 228 ASN A 232 -1 O TYR A 230 N LEU A 181 SHEET 5 AA1 8 HIS A 210 TRP A 217 -1 N TRP A 217 O VAL A 229 SHEET 6 AA1 8 PRO A 200 CYS A 203 -1 N LEU A 201 O ARG A 212 SHEET 7 AA1 8 SER A 135 GLY A 140 -1 N HIS A 137 O VAL A 202 SHEET 8 AA1 8 GLN A 156 VAL A 163 -1 O ILE A 160 N CYS A 136 SHEET 1 AA2 7 GLN A 30 THR A 35 0 SHEET 2 AA2 7 HIS A 39 HIS A 48 -1 O GLY A 44 N ALA A 31 SHEET 3 AA2 7 TRP A 51 THR A 54 -1 O LEU A 53 N VAL A 45 SHEET 4 AA2 7 MET A 104 LEU A 108 -1 O LEU A 106 N VAL A 52 SHEET 5 AA2 7 GLU A 81 ILE A 90 -1 N VAL A 86 O ARG A 107 SHEET 6 AA2 7 LEU A 63 LEU A 67 -1 N LEU A 67 O GLU A 81 SHEET 7 AA2 7 GLN A 30 THR A 35 -1 N TYR A 34 O GLN A 64 SHEET 1 AA3 8 GLY B 20 PRO B 21 0 SHEET 2 AA3 8 GLN B 156 VAL B 163 -1 O CYS B 157 N GLY B 20 SHEET 3 AA3 8 MET B 180 GLY B 184 -1 O GLY B 184 N HIS B 161 SHEET 4 AA3 8 GLY B 228 ASN B 232 -1 O TYR B 230 N LEU B 181 SHEET 5 AA3 8 HIS B 210 TRP B 217 -1 N TRP B 217 O VAL B 229 SHEET 6 AA3 8 PRO B 200 CYS B 203 -1 N LEU B 201 O ARG B 212 SHEET 7 AA3 8 SER B 135 GLY B 140 -1 N HIS B 137 O VAL B 202 SHEET 8 AA3 8 GLN B 156 VAL B 163 -1 O ILE B 160 N CYS B 136 SHEET 1 AA4 7 GLN B 30 THR B 35 0 SHEET 2 AA4 7 HIS B 39 HIS B 48 -1 O LEU B 41 N LEU B 33 SHEET 3 AA4 7 TRP B 51 THR B 54 -1 O LEU B 53 N VAL B 45 SHEET 4 AA4 7 MET B 104 LEU B 108 -1 O LEU B 106 N VAL B 52 SHEET 5 AA4 7 GLU B 81 ILE B 90 -1 N VAL B 89 O LEU B 105 SHEET 6 AA4 7 GLN B 64 LEU B 67 -1 N LEU B 67 O GLU B 81 SHEET 7 AA4 7 GLN B 30 THR B 35 -1 N TYR B 34 O GLN B 64 SSBOND 1 CYS A 22 CYS A 157 1555 1555 2.02 SSBOND 2 CYS A 42 CYS A 58 1555 1555 2.04 SSBOND 3 CYS A 128 CYS A 234 1555 1555 2.05 SSBOND 4 CYS A 136 CYS A 203 1555 1555 2.03 SSBOND 5 CYS A 168 CYS A 182 1555 1555 1.97 SSBOND 6 CYS A 193 CYS A 222 1555 1555 2.07 SSBOND 7 CYS B 22 CYS B 157 1555 1555 2.04 SSBOND 8 CYS B 42 CYS B 58 1555 1555 2.07 SSBOND 9 CYS B 128 CYS B 234 1555 1555 2.03 SSBOND 10 CYS B 136 CYS B 203 1555 1555 2.05 SSBOND 11 CYS B 168 CYS B 182 1555 1555 1.98 SSBOND 12 CYS B 193 CYS B 222 1555 1555 2.01 CISPEP 1 ILE A 220 PRO A 221 0 -5.42 CISPEP 2 ILE B 220 PRO B 221 0 -1.93 CRYST1 62.410 46.860 68.230 90.00 92.32 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016023 0.000000 0.000649 0.00000 SCALE2 0.000000 0.021340 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014668 0.00000