HEADER OXIDOREDUCTASE 16-DEC-21 7QJL TITLE CRYSTAL STRUCTURE OF CYP142 FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX TITLE 2 WITH AN INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: STEROID C26-MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CHOLEST-4-EN-3-ONE C26-MONOOXYGENASE,CHOLEST-4-EN-3-ONE C26- COMPND 5 MONOOXYGENASE [(25R)-3-OXOCHOLEST-4-EN-26-OATE FORMING],CHOLESTEROL COMPND 6 C26-MONOOXYGENASE,CHOLESTEROL C26-MONOOXYGENASE [(25R)-3BETA- COMPND 7 HYDROXYCHOLEST-5-EN-26-OATE FORMING],CYTOCHROME P450 142,STEROID C27- COMPND 8 MONOOXYGENASE; COMPND 9 EC: 1.14.15.28; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: CYP142, CYP142A1, RV3518C, MTV023.25C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS CYP, P450, COMPLEX, INHIBITOR, TB, TUBERCULOSIS, CHOLESTEROL, KEYWDS 2 CYTOCHROME, HEME, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SNEE,C.LEVY,M.KATARIYA REVDAT 4 07-FEB-24 7QJL 1 REMARK REVDAT 3 31-MAY-23 7QJL 1 JRNL REVDAT 2 05-APR-23 7QJL 1 COMPND SOURCE JRNL DBREF REVDAT 2 2 1 SEQADV REVDAT 1 28-DEC-22 7QJL 0 JRNL AUTH M.M.KATARIYA,M.SNEE,R.B.TUNNICLIFFE,M.E.KAVANAGH, JRNL AUTH 2 H.I.M.BOSHOFF,C.N.AMADI,C.W.LEVY,A.W.MUNRO,C.ABELL,D.LEYS, JRNL AUTH 3 A.G.COYNE,K.J.MCLEAN JRNL TITL STRUCTURE BASED DISCOVERY OF INHIBITORS OF CYP125 AND CYP142 JRNL TITL 2 FROM MYCOBACTERIUM TUBERCULOSIS. JRNL REF CHEMISTRY V. 29 03868 2023 JRNL REFN ISSN 0947-6539 JRNL PMID 36912255 JRNL DOI 10.1002/CHEM.202203868 REMARK 2 REMARK 2 RESOLUTION. 1.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 99094 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4859 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.0600 - 4.2900 1.00 3365 197 0.1531 0.1633 REMARK 3 2 4.2900 - 3.4000 1.00 3262 163 0.1357 0.1418 REMARK 3 3 3.4000 - 2.9700 1.00 3193 171 0.1486 0.1909 REMARK 3 4 2.9700 - 2.7000 1.00 3170 182 0.1478 0.1852 REMARK 3 5 2.7000 - 2.5100 1.00 3174 163 0.1369 0.1714 REMARK 3 6 2.5100 - 2.3600 1.00 3177 150 0.1338 0.1443 REMARK 3 7 2.3600 - 2.2400 1.00 3189 146 0.1298 0.1566 REMARK 3 8 2.2400 - 2.1400 1.00 3129 159 0.1328 0.1281 REMARK 3 9 2.1400 - 2.0600 1.00 3142 151 0.1430 0.1560 REMARK 3 10 2.0600 - 1.9900 1.00 3167 158 0.1510 0.1853 REMARK 3 11 1.9900 - 1.9300 1.00 3149 150 0.1501 0.1670 REMARK 3 12 1.9300 - 1.8700 1.00 3109 181 0.1435 0.1817 REMARK 3 13 1.8700 - 1.8200 1.00 3155 153 0.1481 0.1679 REMARK 3 14 1.8200 - 1.7800 1.00 3102 176 0.1479 0.1744 REMARK 3 15 1.7800 - 1.7400 1.00 3144 148 0.1429 0.1637 REMARK 3 16 1.7400 - 1.7000 1.00 3124 137 0.1576 0.1839 REMARK 3 17 1.7000 - 1.6700 1.00 3107 188 0.1578 0.1930 REMARK 3 18 1.6700 - 1.6400 1.00 3084 168 0.1684 0.1929 REMARK 3 19 1.6400 - 1.6100 1.00 3157 151 0.1649 0.1849 REMARK 3 20 1.6100 - 1.5800 1.00 3112 160 0.1710 0.2009 REMARK 3 21 1.5800 - 1.5500 1.00 3116 153 0.1683 0.1658 REMARK 3 22 1.5500 - 1.5300 1.00 3121 153 0.1733 0.1999 REMARK 3 23 1.5300 - 1.5100 1.00 3096 166 0.1750 0.1775 REMARK 3 24 1.5100 - 1.4900 1.00 3092 151 0.1809 0.1895 REMARK 3 25 1.4900 - 1.4700 1.00 3102 154 0.1909 0.2155 REMARK 3 26 1.4700 - 1.4500 1.00 3130 168 0.2045 0.2263 REMARK 3 27 1.4500 - 1.4300 1.00 3095 169 0.2166 0.2337 REMARK 3 28 1.4300 - 1.4100 1.00 3086 158 0.2367 0.2797 REMARK 3 29 1.4100 - 1.4000 1.00 3106 176 0.2475 0.2700 REMARK 3 30 1.4000 - 1.3800 1.00 3080 159 0.2749 0.2788 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.135 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.639 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3403 REMARK 3 ANGLE : 1.382 4666 REMARK 3 CHIRALITY : 0.102 511 REMARK 3 PLANARITY : 0.017 624 REMARK 3 DIHEDRAL : 8.644 497 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 15.3270 45.1534 82.6402 REMARK 3 T TENSOR REMARK 3 T11: 0.1328 T22: 0.2680 REMARK 3 T33: 0.0629 T12: -0.0011 REMARK 3 T13: -0.0057 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.6735 L22: 1.0562 REMARK 3 L33: 0.9146 L12: 0.1588 REMARK 3 L13: -0.2494 L23: -0.2339 REMARK 3 S TENSOR REMARK 3 S11: -0.0487 S12: 0.0108 S13: -0.0033 REMARK 3 S21: -0.0089 S22: 0.0295 S23: -0.0274 REMARK 3 S31: 0.0207 S32: 0.0774 S33: 0.0139 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QJL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1292119769. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 99205 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.380 REMARK 200 RESOLUTION RANGE LOW (A) : 66.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 1.50900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2XKR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% W/V PEG 20,000, 8% V/V PEG 550 MME, REMARK 280 0.1M SODIUM ACETATE PH 4.5, 0.25M KBR, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.76100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.00500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.08500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.00500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.76100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.08500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 3 CG CD OE1 OE2 REMARK 470 GLU A 170 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH12 ARG A 376 O HOH A 502 1.36 REMARK 500 HH11 ARG A 365 O HOH A 505 1.49 REMARK 500 O GLY A 231 O HOH A 501 1.93 REMARK 500 O HOH A 814 O HOH A 843 2.01 REMARK 500 NH1 ARG A 376 O HOH A 502 2.06 REMARK 500 OE2 GLU A 355 O HOH A 503 2.10 REMARK 500 O HOH A 916 O HOH A 926 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 957 O HOH A 992 3546 2.15 REMARK 500 OD2 ASP A 196 NH2 ARG A 248 1655 2.18 REMARK 500 O HOH A 708 O HOH A 869 1455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 157 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 287 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 31 81.83 -158.48 REMARK 500 LEU A 129 -55.95 -131.19 REMARK 500 THR A 198 -150.85 -121.57 REMARK 500 ALA A 275 69.32 31.42 REMARK 500 LEU A 361 59.83 -118.80 REMARK 500 ALA A 378 138.96 -172.88 REMARK 500 PHE A 380 -66.72 -125.08 REMARK 500 MET A 387 79.31 -150.40 REMARK 500 MET A 387 80.92 -151.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 988 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 989 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A 990 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A 991 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH A 992 DISTANCE = 8.10 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 340 SG REMARK 620 2 HEM A 401 NA 96.4 REMARK 620 3 HEM A 401 NB 88.6 89.1 REMARK 620 4 HEM A 401 NC 83.9 179.6 90.6 REMARK 620 5 HEM A 401 ND 94.2 90.1 177.2 90.1 REMARK 620 6 DQE A 407 N14 174.4 89.0 92.9 90.7 84.4 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7QWN RELATED DB: PDB REMARK 900 7QWN CONTAINS A DIFFERENT PROTEIN IN COMPLEX WITH THE SAME INHIBITOR DBREF 7QJL A 2 398 UNP P9WPL5 CP142_MYCTU 2 398 SEQADV 7QJL GLY A 1 UNP P9WPL5 EXPRESSION TAG SEQRES 1 A 398 GLY THR GLU ALA PRO ASP VAL ASP LEU ALA ASP GLY ASN SEQRES 2 A 398 PHE TYR ALA SER ARG GLU ALA ARG ALA ALA TYR ARG TRP SEQRES 3 A 398 MET ARG ALA ASN GLN PRO VAL PHE ARG ASP ARG ASN GLY SEQRES 4 A 398 LEU ALA ALA ALA SER THR TYR GLN ALA VAL ILE ASP ALA SEQRES 5 A 398 GLU ARG GLN PRO GLU LEU PHE SER ASN ALA GLY GLY ILE SEQRES 6 A 398 ARG PRO ASP GLN PRO ALA LEU PRO MET MET ILE ASP MET SEQRES 7 A 398 ASP ASP PRO ALA HIS LEU LEU ARG ARG LYS LEU VAL ASN SEQRES 8 A 398 ALA GLY PHE THR ARG LYS ARG VAL LYS ASP LYS GLU ALA SEQRES 9 A 398 SER ILE ALA ALA LEU CYS ASP THR LEU ILE ASP ALA VAL SEQRES 10 A 398 CYS GLU ARG GLY GLU CYS ASP PHE VAL ARG ASP LEU ALA SEQRES 11 A 398 ALA PRO LEU PRO MET ALA VAL ILE GLY ASP MET LEU GLY SEQRES 12 A 398 VAL ARG PRO GLU GLN ARG ASP MET PHE LEU ARG TRP SER SEQRES 13 A 398 ASP ASP LEU VAL THR PHE LEU SER SER HIS VAL SER GLN SEQRES 14 A 398 GLU ASP PHE GLN ILE THR MET ASP ALA PHE ALA ALA TYR SEQRES 15 A 398 ASN ASP PHE THR ARG ALA THR ILE ALA ALA ARG ARG ALA SEQRES 16 A 398 ASP PRO THR ASP ASP LEU VAL SER VAL LEU VAL SER SER SEQRES 17 A 398 GLU VAL ASP GLY GLU ARG LEU SER ASP ASP GLU LEU VAL SEQRES 18 A 398 MET GLU THR LEU LEU ILE LEU ILE GLY GLY ASP GLU THR SEQRES 19 A 398 THR ARG HIS THR LEU SER GLY GLY THR GLU GLN LEU LEU SEQRES 20 A 398 ARG ASN ARG ASP GLN TRP ASP LEU LEU GLN ARG ASP PRO SEQRES 21 A 398 SER LEU LEU PRO GLY ALA ILE GLU GLU MET LEU ARG TRP SEQRES 22 A 398 THR ALA PRO VAL LYS ASN MET CYS ARG VAL LEU THR ALA SEQRES 23 A 398 ASP THR GLU PHE HIS GLY THR ALA LEU CYS ALA GLY GLU SEQRES 24 A 398 LYS MET MET LEU LEU PHE GLU SER ALA ASN PHE ASP GLU SEQRES 25 A 398 ALA VAL PHE CYS GLU PRO GLU LYS PHE ASP VAL GLN ARG SEQRES 26 A 398 ASN PRO ASN SER HIS LEU ALA PHE GLY PHE GLY THR HIS SEQRES 27 A 398 PHE CYS LEU GLY ASN GLN LEU ALA ARG LEU GLU LEU SER SEQRES 28 A 398 LEU MET THR GLU ARG VAL LEU ARG ARG LEU PRO ASP LEU SEQRES 29 A 398 ARG LEU VAL ALA ASP ASP SER VAL LEU PRO LEU ARG PRO SEQRES 30 A 398 ALA ASN PHE VAL SER GLY LEU GLU SER MET PRO VAL VAL SEQRES 31 A 398 PHE THR PRO SER PRO PRO LEU GLY HET HEM A 401 73 HET ACT A 402 7 HET BR A 403 1 HET BR A 404 1 HET BR A 405 1 HET BR A 406 1 HET DQE A 407 34 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM ACT ACETATE ION HETNAM BR BROMIDE ION HETNAM DQE ETHYL 5-PYRIDIN-4-YL-1~{H}-INDOLE-2-CARBOXYLATE HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 BR 4(BR 1-) FORMUL 8 DQE C16 H14 N2 O2 FORMUL 9 HOH *492(H2 O) HELIX 1 AA1 ASP A 11 SER A 17 1 7 HELIX 2 AA2 GLU A 19 GLN A 31 1 13 HELIX 3 AA3 THR A 45 ARG A 54 1 10 HELIX 4 AA4 MET A 74 MET A 78 5 5 HELIX 5 AA5 PRO A 81 ASN A 91 1 11 HELIX 6 AA6 ALA A 92 PHE A 94 5 3 HELIX 7 AA7 THR A 95 ASP A 101 1 7 HELIX 8 AA8 LYS A 102 ALA A 116 1 15 HELIX 9 AA9 PHE A 125 LEU A 129 1 5 HELIX 10 AB1 ALA A 131 GLY A 143 1 13 HELIX 11 AB2 ARG A 145 GLU A 147 5 3 HELIX 12 AB3 GLN A 148 SER A 164 1 17 HELIX 13 AB4 SER A 168 ASP A 196 1 29 HELIX 14 AB5 ASP A 200 SER A 208 1 9 HELIX 15 AB6 SER A 216 THR A 234 1 19 HELIX 16 AB7 THR A 234 ASN A 249 1 16 HELIX 17 AB8 ASN A 249 ASP A 259 1 11 HELIX 18 AB9 LEU A 262 ALA A 275 1 14 HELIX 19 AC1 PHE A 305 PHE A 310 1 6 HELIX 20 AC2 GLY A 342 LEU A 361 1 20 HELIX 21 AC3 ASP A 369 LEU A 373 5 5 SHEET 1 AA1 5 VAL A 33 ARG A 35 0 SHEET 2 AA1 5 ALA A 41 ALA A 43 -1 O ALA A 42 N PHE A 34 SHEET 3 AA1 5 LYS A 300 LEU A 304 1 O MET A 302 N ALA A 43 SHEET 4 AA1 5 ASN A 279 LEU A 284 -1 N ARG A 282 O MET A 301 SHEET 5 AA1 5 PHE A 59 SER A 60 -1 N SER A 60 O VAL A 283 SHEET 1 AA2 3 GLU A 122 ASP A 124 0 SHEET 2 AA2 3 PRO A 388 VAL A 390 -1 O VAL A 389 N CYS A 123 SHEET 3 AA2 3 ARG A 365 LEU A 366 -1 N ARG A 365 O VAL A 390 SHEET 1 AA3 2 THR A 288 PHE A 290 0 SHEET 2 AA3 2 THR A 293 LEU A 295 -1 O LEU A 295 N THR A 288 LINK SG CYS A 340 FE HEM A 401 1555 1555 2.33 LINK FE HEM A 401 N14 DQE A 407 1555 1555 2.14 CISPEP 1 ASP A 80 PRO A 81 0 6.49 CISPEP 2 ASN A 326 PRO A 327 0 8.27 CRYST1 55.522 66.170 130.010 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018011 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015113 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007692 0.00000