HEADER OXIDOREDUCTASE 16-DEC-21 7QJL
TITLE CRYSTAL STRUCTURE OF CYP142 FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX
TITLE 2 WITH AN INHIBITOR
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: STEROID C26-MONOOXYGENASE;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: CHOLEST-4-EN-3-ONE C26-MONOOXYGENASE,CHOLEST-4-EN-3-ONE C26-
COMPND 5 MONOOXYGENASE [(25R)-3-OXOCHOLEST-4-EN-26-OATE FORMING],CHOLESTEROL
COMPND 6 C26-MONOOXYGENASE,CHOLESTEROL C26-MONOOXYGENASE [(25R)-3BETA-
COMPND 7 HYDROXYCHOLEST-5-EN-26-OATE FORMING],CYTOCHROME P450 142,STEROID C27-
COMPND 8 MONOOXYGENASE;
COMPND 9 EC: 1.14.15.28;
COMPND 10 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS;
SOURCE 3 ORGANISM_TAXID: 1773;
SOURCE 4 GENE: CYP142, CYP142A1, RV3518C, MTV023.25C;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C41;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A
KEYWDS CYP, P450, COMPLEX, INHIBITOR, TB, TUBERCULOSIS, CHOLESTEROL,
KEYWDS 2 CYTOCHROME, HEME, OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR M.SNEE,C.LEVY,M.KATARIYA
REVDAT 4 07-FEB-24 7QJL 1 REMARK
REVDAT 3 31-MAY-23 7QJL 1 JRNL
REVDAT 2 05-APR-23 7QJL 1 COMPND SOURCE JRNL DBREF
REVDAT 2 2 1 SEQADV
REVDAT 1 28-DEC-22 7QJL 0
JRNL AUTH M.M.KATARIYA,M.SNEE,R.B.TUNNICLIFFE,M.E.KAVANAGH,
JRNL AUTH 2 H.I.M.BOSHOFF,C.N.AMADI,C.W.LEVY,A.W.MUNRO,C.ABELL,D.LEYS,
JRNL AUTH 3 A.G.COYNE,K.J.MCLEAN
JRNL TITL STRUCTURE BASED DISCOVERY OF INHIBITORS OF CYP125 AND CYP142
JRNL TITL 2 FROM MYCOBACTERIUM TUBERCULOSIS.
JRNL REF CHEMISTRY V. 29 03868 2023
JRNL REFN ISSN 0947-6539
JRNL PMID 36912255
JRNL DOI 10.1002/CHEM.202203868
REMARK 2
REMARK 2 RESOLUTION. 1.38 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.19.2_4158
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.38
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.06
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330
REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 3 NUMBER OF REFLECTIONS : 99094
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.151
REMARK 3 R VALUE (WORKING SET) : 0.150
REMARK 3 FREE R VALUE : 0.171
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900
REMARK 3 FREE R VALUE TEST SET COUNT : 4859
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 51.0600 - 4.2900 1.00 3365 197 0.1531 0.1633
REMARK 3 2 4.2900 - 3.4000 1.00 3262 163 0.1357 0.1418
REMARK 3 3 3.4000 - 2.9700 1.00 3193 171 0.1486 0.1909
REMARK 3 4 2.9700 - 2.7000 1.00 3170 182 0.1478 0.1852
REMARK 3 5 2.7000 - 2.5100 1.00 3174 163 0.1369 0.1714
REMARK 3 6 2.5100 - 2.3600 1.00 3177 150 0.1338 0.1443
REMARK 3 7 2.3600 - 2.2400 1.00 3189 146 0.1298 0.1566
REMARK 3 8 2.2400 - 2.1400 1.00 3129 159 0.1328 0.1281
REMARK 3 9 2.1400 - 2.0600 1.00 3142 151 0.1430 0.1560
REMARK 3 10 2.0600 - 1.9900 1.00 3167 158 0.1510 0.1853
REMARK 3 11 1.9900 - 1.9300 1.00 3149 150 0.1501 0.1670
REMARK 3 12 1.9300 - 1.8700 1.00 3109 181 0.1435 0.1817
REMARK 3 13 1.8700 - 1.8200 1.00 3155 153 0.1481 0.1679
REMARK 3 14 1.8200 - 1.7800 1.00 3102 176 0.1479 0.1744
REMARK 3 15 1.7800 - 1.7400 1.00 3144 148 0.1429 0.1637
REMARK 3 16 1.7400 - 1.7000 1.00 3124 137 0.1576 0.1839
REMARK 3 17 1.7000 - 1.6700 1.00 3107 188 0.1578 0.1930
REMARK 3 18 1.6700 - 1.6400 1.00 3084 168 0.1684 0.1929
REMARK 3 19 1.6400 - 1.6100 1.00 3157 151 0.1649 0.1849
REMARK 3 20 1.6100 - 1.5800 1.00 3112 160 0.1710 0.2009
REMARK 3 21 1.5800 - 1.5500 1.00 3116 153 0.1683 0.1658
REMARK 3 22 1.5500 - 1.5300 1.00 3121 153 0.1733 0.1999
REMARK 3 23 1.5300 - 1.5100 1.00 3096 166 0.1750 0.1775
REMARK 3 24 1.5100 - 1.4900 1.00 3092 151 0.1809 0.1895
REMARK 3 25 1.4900 - 1.4700 1.00 3102 154 0.1909 0.2155
REMARK 3 26 1.4700 - 1.4500 1.00 3130 168 0.2045 0.2263
REMARK 3 27 1.4500 - 1.4300 1.00 3095 169 0.2166 0.2337
REMARK 3 28 1.4300 - 1.4100 1.00 3086 158 0.2367 0.2797
REMARK 3 29 1.4100 - 1.4000 1.00 3106 176 0.2475 0.2700
REMARK 3 30 1.4000 - 1.3800 1.00 3080 159 0.2749 0.2788
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.135
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.639
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 18.00
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.85
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.013 3403
REMARK 3 ANGLE : 1.382 4666
REMARK 3 CHIRALITY : 0.102 511
REMARK 3 PLANARITY : 0.017 624
REMARK 3 DIHEDRAL : 8.644 497
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 1
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: ALL
REMARK 3 ORIGIN FOR THE GROUP (A): 15.3270 45.1534 82.6402
REMARK 3 T TENSOR
REMARK 3 T11: 0.1328 T22: 0.2680
REMARK 3 T33: 0.0629 T12: -0.0011
REMARK 3 T13: -0.0057 T23: -0.0039
REMARK 3 L TENSOR
REMARK 3 L11: 0.6735 L22: 1.0562
REMARK 3 L33: 0.9146 L12: 0.1588
REMARK 3 L13: -0.2494 L23: -0.2339
REMARK 3 S TENSOR
REMARK 3 S11: -0.0487 S12: 0.0108 S13: -0.0033
REMARK 3 S21: -0.0089 S22: 0.0295 S23: -0.0274
REMARK 3 S31: 0.0207 S32: 0.0774 S33: 0.0139
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 7QJL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-DEC-21.
REMARK 100 THE DEPOSITION ID IS D_1292119769.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 25-NOV-18
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 4.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I03
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 99205
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.380
REMARK 200 RESOLUTION RANGE LOW (A) : 66.170
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 6.900
REMARK 200 R MERGE (I) : 0.08700
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.2000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.38
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 6.40
REMARK 200 R MERGE FOR SHELL (I) : 1.50900
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.100
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 2XKR
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 54.30
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 8% W/V PEG 20,000, 8% V/V PEG 550 MME,
REMARK 280 0.1M SODIUM ACETATE PH 4.5, 0.25M KBR, VAPOR DIFFUSION, SITTING
REMARK 280 DROP, TEMPERATURE 277.15K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.76100
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.00500
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.08500
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.00500
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.76100
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.08500
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 1930 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 16280 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 1
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLU A 3 CG CD OE1 OE2
REMARK 470 GLU A 170 CG CD OE1 OE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HH12 ARG A 376 O HOH A 502 1.36
REMARK 500 HH11 ARG A 365 O HOH A 505 1.49
REMARK 500 O GLY A 231 O HOH A 501 1.93
REMARK 500 O HOH A 814 O HOH A 843 2.01
REMARK 500 NH1 ARG A 376 O HOH A 502 2.06
REMARK 500 OE2 GLU A 355 O HOH A 503 2.10
REMARK 500 O HOH A 916 O HOH A 926 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH A 957 O HOH A 992 3546 2.15
REMARK 500 OD2 ASP A 196 NH2 ARG A 248 1655 2.18
REMARK 500 O HOH A 708 O HOH A 869 1455 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ASP A 157 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES
REMARK 500 ASP A 287 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 GLN A 31 81.83 -158.48
REMARK 500 LEU A 129 -55.95 -131.19
REMARK 500 THR A 198 -150.85 -121.57
REMARK 500 ALA A 275 69.32 31.42
REMARK 500 LEU A 361 59.83 -118.80
REMARK 500 ALA A 378 138.96 -172.88
REMARK 500 PHE A 380 -66.72 -125.08
REMARK 500 MET A 387 79.31 -150.40
REMARK 500 MET A 387 80.92 -151.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A 988 DISTANCE = 5.90 ANGSTROMS
REMARK 525 HOH A 989 DISTANCE = 6.21 ANGSTROMS
REMARK 525 HOH A 990 DISTANCE = 6.60 ANGSTROMS
REMARK 525 HOH A 991 DISTANCE = 6.84 ANGSTROMS
REMARK 525 HOH A 992 DISTANCE = 8.10 ANGSTROMS
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 HEM A 401 FE
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS A 340 SG
REMARK 620 2 HEM A 401 NA 96.4
REMARK 620 3 HEM A 401 NB 88.6 89.1
REMARK 620 4 HEM A 401 NC 83.9 179.6 90.6
REMARK 620 5 HEM A 401 ND 94.2 90.1 177.2 90.1
REMARK 620 6 DQE A 407 N14 174.4 89.0 92.9 90.7 84.4
REMARK 620 N 1 2 3 4 5
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 7QWN RELATED DB: PDB
REMARK 900 7QWN CONTAINS A DIFFERENT PROTEIN IN COMPLEX WITH THE SAME INHIBITOR
DBREF 7QJL A 2 398 UNP P9WPL5 CP142_MYCTU 2 398
SEQADV 7QJL GLY A 1 UNP P9WPL5 EXPRESSION TAG
SEQRES 1 A 398 GLY THR GLU ALA PRO ASP VAL ASP LEU ALA ASP GLY ASN
SEQRES 2 A 398 PHE TYR ALA SER ARG GLU ALA ARG ALA ALA TYR ARG TRP
SEQRES 3 A 398 MET ARG ALA ASN GLN PRO VAL PHE ARG ASP ARG ASN GLY
SEQRES 4 A 398 LEU ALA ALA ALA SER THR TYR GLN ALA VAL ILE ASP ALA
SEQRES 5 A 398 GLU ARG GLN PRO GLU LEU PHE SER ASN ALA GLY GLY ILE
SEQRES 6 A 398 ARG PRO ASP GLN PRO ALA LEU PRO MET MET ILE ASP MET
SEQRES 7 A 398 ASP ASP PRO ALA HIS LEU LEU ARG ARG LYS LEU VAL ASN
SEQRES 8 A 398 ALA GLY PHE THR ARG LYS ARG VAL LYS ASP LYS GLU ALA
SEQRES 9 A 398 SER ILE ALA ALA LEU CYS ASP THR LEU ILE ASP ALA VAL
SEQRES 10 A 398 CYS GLU ARG GLY GLU CYS ASP PHE VAL ARG ASP LEU ALA
SEQRES 11 A 398 ALA PRO LEU PRO MET ALA VAL ILE GLY ASP MET LEU GLY
SEQRES 12 A 398 VAL ARG PRO GLU GLN ARG ASP MET PHE LEU ARG TRP SER
SEQRES 13 A 398 ASP ASP LEU VAL THR PHE LEU SER SER HIS VAL SER GLN
SEQRES 14 A 398 GLU ASP PHE GLN ILE THR MET ASP ALA PHE ALA ALA TYR
SEQRES 15 A 398 ASN ASP PHE THR ARG ALA THR ILE ALA ALA ARG ARG ALA
SEQRES 16 A 398 ASP PRO THR ASP ASP LEU VAL SER VAL LEU VAL SER SER
SEQRES 17 A 398 GLU VAL ASP GLY GLU ARG LEU SER ASP ASP GLU LEU VAL
SEQRES 18 A 398 MET GLU THR LEU LEU ILE LEU ILE GLY GLY ASP GLU THR
SEQRES 19 A 398 THR ARG HIS THR LEU SER GLY GLY THR GLU GLN LEU LEU
SEQRES 20 A 398 ARG ASN ARG ASP GLN TRP ASP LEU LEU GLN ARG ASP PRO
SEQRES 21 A 398 SER LEU LEU PRO GLY ALA ILE GLU GLU MET LEU ARG TRP
SEQRES 22 A 398 THR ALA PRO VAL LYS ASN MET CYS ARG VAL LEU THR ALA
SEQRES 23 A 398 ASP THR GLU PHE HIS GLY THR ALA LEU CYS ALA GLY GLU
SEQRES 24 A 398 LYS MET MET LEU LEU PHE GLU SER ALA ASN PHE ASP GLU
SEQRES 25 A 398 ALA VAL PHE CYS GLU PRO GLU LYS PHE ASP VAL GLN ARG
SEQRES 26 A 398 ASN PRO ASN SER HIS LEU ALA PHE GLY PHE GLY THR HIS
SEQRES 27 A 398 PHE CYS LEU GLY ASN GLN LEU ALA ARG LEU GLU LEU SER
SEQRES 28 A 398 LEU MET THR GLU ARG VAL LEU ARG ARG LEU PRO ASP LEU
SEQRES 29 A 398 ARG LEU VAL ALA ASP ASP SER VAL LEU PRO LEU ARG PRO
SEQRES 30 A 398 ALA ASN PHE VAL SER GLY LEU GLU SER MET PRO VAL VAL
SEQRES 31 A 398 PHE THR PRO SER PRO PRO LEU GLY
HET HEM A 401 73
HET ACT A 402 7
HET BR A 403 1
HET BR A 404 1
HET BR A 405 1
HET BR A 406 1
HET DQE A 407 34
HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE
HETNAM ACT ACETATE ION
HETNAM BR BROMIDE ION
HETNAM DQE ETHYL 5-PYRIDIN-4-YL-1~{H}-INDOLE-2-CARBOXYLATE
HETSYN HEM HEME
FORMUL 2 HEM C34 H32 FE N4 O4
FORMUL 3 ACT C2 H3 O2 1-
FORMUL 4 BR 4(BR 1-)
FORMUL 8 DQE C16 H14 N2 O2
FORMUL 9 HOH *492(H2 O)
HELIX 1 AA1 ASP A 11 SER A 17 1 7
HELIX 2 AA2 GLU A 19 GLN A 31 1 13
HELIX 3 AA3 THR A 45 ARG A 54 1 10
HELIX 4 AA4 MET A 74 MET A 78 5 5
HELIX 5 AA5 PRO A 81 ASN A 91 1 11
HELIX 6 AA6 ALA A 92 PHE A 94 5 3
HELIX 7 AA7 THR A 95 ASP A 101 1 7
HELIX 8 AA8 LYS A 102 ALA A 116 1 15
HELIX 9 AA9 PHE A 125 LEU A 129 1 5
HELIX 10 AB1 ALA A 131 GLY A 143 1 13
HELIX 11 AB2 ARG A 145 GLU A 147 5 3
HELIX 12 AB3 GLN A 148 SER A 164 1 17
HELIX 13 AB4 SER A 168 ASP A 196 1 29
HELIX 14 AB5 ASP A 200 SER A 208 1 9
HELIX 15 AB6 SER A 216 THR A 234 1 19
HELIX 16 AB7 THR A 234 ASN A 249 1 16
HELIX 17 AB8 ASN A 249 ASP A 259 1 11
HELIX 18 AB9 LEU A 262 ALA A 275 1 14
HELIX 19 AC1 PHE A 305 PHE A 310 1 6
HELIX 20 AC2 GLY A 342 LEU A 361 1 20
HELIX 21 AC3 ASP A 369 LEU A 373 5 5
SHEET 1 AA1 5 VAL A 33 ARG A 35 0
SHEET 2 AA1 5 ALA A 41 ALA A 43 -1 O ALA A 42 N PHE A 34
SHEET 3 AA1 5 LYS A 300 LEU A 304 1 O MET A 302 N ALA A 43
SHEET 4 AA1 5 ASN A 279 LEU A 284 -1 N ARG A 282 O MET A 301
SHEET 5 AA1 5 PHE A 59 SER A 60 -1 N SER A 60 O VAL A 283
SHEET 1 AA2 3 GLU A 122 ASP A 124 0
SHEET 2 AA2 3 PRO A 388 VAL A 390 -1 O VAL A 389 N CYS A 123
SHEET 3 AA2 3 ARG A 365 LEU A 366 -1 N ARG A 365 O VAL A 390
SHEET 1 AA3 2 THR A 288 PHE A 290 0
SHEET 2 AA3 2 THR A 293 LEU A 295 -1 O LEU A 295 N THR A 288
LINK SG CYS A 340 FE HEM A 401 1555 1555 2.33
LINK FE HEM A 401 N14 DQE A 407 1555 1555 2.14
CISPEP 1 ASP A 80 PRO A 81 0 6.49
CISPEP 2 ASN A 326 PRO A 327 0 8.27
CRYST1 55.522 66.170 130.010 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.018011 0.000000 0.000000 0.00000
SCALE2 0.000000 0.015113 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007692 0.00000