HEADER OXIDOREDUCTASE 17-DEC-21 7QK8 TITLE CRYSTAL STRUCTURE OF THE ALDH1A3-NAD+ COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALDEHYDE DEHYDROGENASE FAMILY 1 MEMBER A3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ALDEHYDE DEHYDROGENASE 6,RETINALDEHYDE DEHYDROGENASE 3, COMPND 5 RALDH3; COMPND 6 EC: 1.2.1.5; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ALDH1A3, ALDH6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALDH1A3, ALDEHYDE DEHYDROGENASE FAMILY 1 MEMBER A3, NAD+, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CASTELLVI,J.FARRES REVDAT 3 31-JAN-24 7QK8 1 REMARK REVDAT 2 27-APR-22 7QK8 1 JRNL REVDAT 1 20-APR-22 7QK8 0 JRNL AUTH A.CASTELLVI,R.PEQUERUL,V.BARRACCO,J.JUANHUIX,X.PARES, JRNL AUTH 2 J.FARRES JRNL TITL STRUCTURAL AND BIOCHEMICAL EVIDENCE THAT ATP INHIBITS THE JRNL TITL 2 CANCER BIOMARKER HUMAN ALDEHYDE DEHYDROGENASE 1A3. JRNL REF COMMUN BIOL V. 5 354 2022 JRNL REFN ESSN 2399-3642 JRNL PMID 35418200 JRNL DOI 10.1038/S42003-022-03311-1 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 (18-SEP-2020) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 92062 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 4477 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.91 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.80 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1755 REMARK 3 BIN R VALUE (WORKING SET) : 0.2298 REMARK 3 BIN FREE R VALUE : 0.2654 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.72 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7338 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 187 REMARK 3 SOLVENT ATOMS : 593 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -11.45050 REMARK 3 B22 (A**2) : 1.02940 REMARK 3 B33 (A**2) : 10.42110 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.230 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.131 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.117 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.127 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.115 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7748 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 10518 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2633 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1340 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 7748 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 1035 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7210 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.96 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.47 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.86 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QK8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1292119877. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92123 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.80300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5FHZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE CRYSTALLIZATION SOLUTION CONSISTED REMARK 280 OF 100 MM BIS-TRIS, PH 5.5, 2-2.2 M AMMONIUM SULFATE AND 5% PEG REMARK 280 400., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 40.78950 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.31850 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 40.78950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 79.31850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 81.57900 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1001 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 LEU A -10 REMARK 465 GLU A -9 REMARK 465 SER A -8 REMARK 465 THR A -7 REMARK 465 SER A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 LYS A -3 REMARK 465 LYS A -2 REMARK 465 ALA A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 ALA A 4 REMARK 465 ASN A 5 REMARK 465 GLY A 6 REMARK 465 ALA A 7 REMARK 465 VAL A 8 REMARK 465 GLU A 9 REMARK 465 ASN A 10 REMARK 465 GLY A 11 REMARK 465 GLN A 12 REMARK 465 PRO A 13 REMARK 465 ASP A 14 REMARK 465 ARG A 15 REMARK 465 LYS A 16 REMARK 465 PRO A 17 REMARK 465 PRO A 18 REMARK 465 ALA A 19 REMARK 465 ASP A 509 REMARK 465 LYS A 510 REMARK 465 ASN A 511 REMARK 465 PRO A 512 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 LEU B -10 REMARK 465 GLU B -9 REMARK 465 SER B -8 REMARK 465 THR B -7 REMARK 465 SER B -6 REMARK 465 LEU B -5 REMARK 465 TYR B -4 REMARK 465 LYS B -3 REMARK 465 LYS B -2 REMARK 465 ALA B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 ALA B 4 REMARK 465 ASN B 5 REMARK 465 GLY B 6 REMARK 465 ALA B 7 REMARK 465 VAL B 8 REMARK 465 GLU B 9 REMARK 465 ASN B 10 REMARK 465 GLY B 11 REMARK 465 GLN B 12 REMARK 465 PRO B 13 REMARK 465 ASP B 14 REMARK 465 ARG B 15 REMARK 465 LYS B 16 REMARK 465 PRO B 17 REMARK 465 PRO B 18 REMARK 465 ALA B 19 REMARK 465 ASP B 509 REMARK 465 LYS B 510 REMARK 465 ASN B 511 REMARK 465 PRO B 512 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 25 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 28 CG CD OE1 OE2 REMARK 470 LYS A 30 CD CE NZ REMARK 470 LYS A 33 CE NZ REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 470 LYS A 44 CD CE NZ REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 ARG A 98 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 260 CG CD OE1 OE2 REMARK 470 LYS A 284 CD CE NZ REMARK 470 GLU A 300 CD OE1 OE2 REMARK 470 GLU A 336 CG CD OE1 OE2 REMARK 470 LYS A 339 CE NZ REMARK 470 LYS A 340 CD CE NZ REMARK 470 ASP A 348 CG OD1 OD2 REMARK 470 LYS A 350 CG CD CE NZ REMARK 470 LYS A 360 CG CD CE NZ REMARK 470 GLN A 361 CG CD OE1 NE2 REMARK 470 LYS A 364 CD CE NZ REMARK 470 GLU A 367 CD OE1 OE2 REMARK 470 GLU A 387 CG CD OE1 OE2 REMARK 470 ASP A 388 CG OD1 OD2 REMARK 470 LYS A 389 CG CD CE NZ REMARK 470 LYS A 394 CG CD CE NZ REMARK 470 ASN A 404 CG OD1 ND2 REMARK 470 LYS A 409 CE NZ REMARK 470 LYS A 423 CG CD CE NZ REMARK 470 LYS A 430 CD CE NZ REMARK 470 ARG B 22 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 25 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 30 CD CE NZ REMARK 470 ARG B 57 NE CZ NH1 NH2 REMARK 470 GLU B 76 CG CD OE1 OE2 REMARK 470 ARG B 98 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 102 CG CD OE1 NE2 REMARK 470 GLU B 260 CG CD OE1 OE2 REMARK 470 GLU B 300 CG CD OE1 OE2 REMARK 470 GLU B 336 CG CD OE1 OE2 REMARK 470 LYS B 339 CE NZ REMARK 470 LYS B 340 CD CE NZ REMARK 470 LYS B 360 CG CD CE NZ REMARK 470 GLN B 361 CG CD OE1 NE2 REMARK 470 PHE B 362 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 363 CG OD1 OD2 REMARK 470 LYS B 364 CD CE NZ REMARK 470 LEU B 366 CG CD1 CD2 REMARK 470 GLU B 367 CD OE1 OE2 REMARK 470 GLU B 370 CG CD OE1 OE2 REMARK 470 LYS B 373 CG CD CE NZ REMARK 470 LYS B 374 CG CD CE NZ REMARK 470 GLU B 387 CG CD OE1 OE2 REMARK 470 ASP B 388 CG OD1 OD2 REMARK 470 LYS B 389 CG CD CE NZ REMARK 470 LYS B 394 CG CD CE NZ REMARK 470 LYS B 409 CE NZ REMARK 470 GLU B 411 CG CD OE1 OE2 REMARK 470 LYS B 430 CD CE NZ REMARK 470 LYS B 453 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 61 -179.96 -170.61 REMARK 500 ILE A 132 -69.64 -107.63 REMARK 500 THR A 158 -94.56 -131.56 REMARK 500 THR A 239 -80.13 -99.34 REMARK 500 SER A 272 -86.13 -86.73 REMARK 500 LEU A 281 -163.63 -113.29 REMARK 500 GLN A 312 58.51 -96.60 REMARK 500 GLN A 312 56.15 -96.60 REMARK 500 MET A 386 -79.61 -67.68 REMARK 500 ASP A 388 83.52 -28.51 REMARK 500 LYS A 389 -49.51 171.01 REMARK 500 LYS A 481 -129.72 50.84 REMARK 500 LEU A 489 164.43 73.03 REMARK 500 ARG B 57 -1.55 76.82 REMARK 500 ILE B 132 -74.45 -108.75 REMARK 500 THR B 158 -92.95 -133.29 REMARK 500 THR B 239 -74.89 -103.11 REMARK 500 SER B 272 -83.94 -86.07 REMARK 500 LEU B 281 -165.08 -117.26 REMARK 500 LEU B 368 -37.40 162.83 REMARK 500 LYS B 389 -50.49 -153.66 REMARK 500 LYS B 481 -131.04 51.85 REMARK 500 LEU B 489 162.88 71.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1001 DISTANCE = 7.02 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 P4C A 605 REMARK 610 P4C B 1306 DBREF 7QK8 A 1 512 UNP P47895 AL1A3_HUMAN 1 512 DBREF 7QK8 B 1 512 UNP P47895 AL1A3_HUMAN 1 512 SEQADV 7QK8 HIS A -16 UNP P47895 EXPRESSION TAG SEQADV 7QK8 HIS A -15 UNP P47895 EXPRESSION TAG SEQADV 7QK8 HIS A -14 UNP P47895 EXPRESSION TAG SEQADV 7QK8 HIS A -13 UNP P47895 EXPRESSION TAG SEQADV 7QK8 HIS A -12 UNP P47895 EXPRESSION TAG SEQADV 7QK8 HIS A -11 UNP P47895 EXPRESSION TAG SEQADV 7QK8 LEU A -10 UNP P47895 EXPRESSION TAG SEQADV 7QK8 GLU A -9 UNP P47895 EXPRESSION TAG SEQADV 7QK8 SER A -8 UNP P47895 EXPRESSION TAG SEQADV 7QK8 THR A -7 UNP P47895 EXPRESSION TAG SEQADV 7QK8 SER A -6 UNP P47895 EXPRESSION TAG SEQADV 7QK8 LEU A -5 UNP P47895 EXPRESSION TAG SEQADV 7QK8 TYR A -4 UNP P47895 EXPRESSION TAG SEQADV 7QK8 LYS A -3 UNP P47895 EXPRESSION TAG SEQADV 7QK8 LYS A -2 UNP P47895 EXPRESSION TAG SEQADV 7QK8 ALA A -1 UNP P47895 EXPRESSION TAG SEQADV 7QK8 GLY A 0 UNP P47895 EXPRESSION TAG SEQADV 7QK8 HIS B -16 UNP P47895 EXPRESSION TAG SEQADV 7QK8 HIS B -15 UNP P47895 EXPRESSION TAG SEQADV 7QK8 HIS B -14 UNP P47895 EXPRESSION TAG SEQADV 7QK8 HIS B -13 UNP P47895 EXPRESSION TAG SEQADV 7QK8 HIS B -12 UNP P47895 EXPRESSION TAG SEQADV 7QK8 HIS B -11 UNP P47895 EXPRESSION TAG SEQADV 7QK8 LEU B -10 UNP P47895 EXPRESSION TAG SEQADV 7QK8 GLU B -9 UNP P47895 EXPRESSION TAG SEQADV 7QK8 SER B -8 UNP P47895 EXPRESSION TAG SEQADV 7QK8 THR B -7 UNP P47895 EXPRESSION TAG SEQADV 7QK8 SER B -6 UNP P47895 EXPRESSION TAG SEQADV 7QK8 LEU B -5 UNP P47895 EXPRESSION TAG SEQADV 7QK8 TYR B -4 UNP P47895 EXPRESSION TAG SEQADV 7QK8 LYS B -3 UNP P47895 EXPRESSION TAG SEQADV 7QK8 LYS B -2 UNP P47895 EXPRESSION TAG SEQADV 7QK8 ALA B -1 UNP P47895 EXPRESSION TAG SEQADV 7QK8 GLY B 0 UNP P47895 EXPRESSION TAG SEQRES 1 A 529 HIS HIS HIS HIS HIS HIS LEU GLU SER THR SER LEU TYR SEQRES 2 A 529 LYS LYS ALA GLY MET ALA THR ALA ASN GLY ALA VAL GLU SEQRES 3 A 529 ASN GLY GLN PRO ASP ARG LYS PRO PRO ALA LEU PRO ARG SEQRES 4 A 529 PRO ILE ARG ASN LEU GLU VAL LYS PHE THR LYS ILE PHE SEQRES 5 A 529 ILE ASN ASN GLU TRP HIS GLU SER LYS SER GLY LYS LYS SEQRES 6 A 529 PHE ALA THR CYS ASN PRO SER THR ARG GLU GLN ILE CYS SEQRES 7 A 529 GLU VAL GLU GLU GLY ASP LYS PRO ASP VAL ASP LYS ALA SEQRES 8 A 529 VAL GLU ALA ALA GLN VAL ALA PHE GLN ARG GLY SER PRO SEQRES 9 A 529 TRP ARG ARG LEU ASP ALA LEU SER ARG GLY ARG LEU LEU SEQRES 10 A 529 HIS GLN LEU ALA ASP LEU VAL GLU ARG ASP ARG ALA THR SEQRES 11 A 529 LEU ALA ALA LEU GLU THR MET ASP THR GLY LYS PRO PHE SEQRES 12 A 529 LEU HIS ALA PHE PHE ILE ASP LEU GLU GLY CYS ILE ARG SEQRES 13 A 529 THR LEU ARG TYR PHE ALA GLY TRP ALA ASP LYS ILE GLN SEQRES 14 A 529 GLY LYS THR ILE PRO THR ASP ASP ASN VAL VAL CYS PHE SEQRES 15 A 529 THR ARG HIS GLU PRO ILE GLY VAL CYS GLY ALA ILE THR SEQRES 16 A 529 PRO TRP ASN PHE PRO LEU LEU MET LEU VAL TRP LYS LEU SEQRES 17 A 529 ALA PRO ALA LEU CYS CYS GLY ASN THR MET VAL LEU LYS SEQRES 18 A 529 PRO ALA GLU GLN THR PRO LEU THR ALA LEU TYR LEU GLY SEQRES 19 A 529 SER LEU ILE LYS GLU ALA GLY PHE PRO PRO GLY VAL VAL SEQRES 20 A 529 ASN ILE VAL PRO GLY PHE GLY PRO THR VAL GLY ALA ALA SEQRES 21 A 529 ILE SER SER HIS PRO GLN ILE ASN LYS ILE ALA PHE THR SEQRES 22 A 529 GLY SER THR GLU VAL GLY LYS LEU VAL LYS GLU ALA ALA SEQRES 23 A 529 SER ARG SER ASN LEU LYS ARG VAL THR LEU GLU LEU GLY SEQRES 24 A 529 GLY LYS ASN PRO CYS ILE VAL CYS ALA ASP ALA ASP LEU SEQRES 25 A 529 ASP LEU ALA VAL GLU CYS ALA HIS GLN GLY VAL PHE PHE SEQRES 26 A 529 ASN GLN GLY GLN CYS CYS THR ALA ALA SER ARG VAL PHE SEQRES 27 A 529 VAL GLU GLU GLN VAL TYR SER GLU PHE VAL ARG ARG SER SEQRES 28 A 529 VAL GLU TYR ALA LYS LYS ARG PRO VAL GLY ASP PRO PHE SEQRES 29 A 529 ASP VAL LYS THR GLU GLN GLY PRO GLN ILE ASP GLN LYS SEQRES 30 A 529 GLN PHE ASP LYS ILE LEU GLU LEU ILE GLU SER GLY LYS SEQRES 31 A 529 LYS GLU GLY ALA LYS LEU GLU CYS GLY GLY SER ALA MET SEQRES 32 A 529 GLU ASP LYS GLY LEU PHE ILE LYS PRO THR VAL PHE SER SEQRES 33 A 529 GLU VAL THR ASP ASN MET ARG ILE ALA LYS GLU GLU ILE SEQRES 34 A 529 PHE GLY PRO VAL GLN PRO ILE LEU LYS PHE LYS SER ILE SEQRES 35 A 529 GLU GLU VAL ILE LYS ARG ALA ASN SER THR ASP TYR GLY SEQRES 36 A 529 LEU THR ALA ALA VAL PHE THR LYS ASN LEU ASP LYS ALA SEQRES 37 A 529 LEU LYS LEU ALA SER ALA LEU GLU SER GLY THR VAL TRP SEQRES 38 A 529 ILE ASN CYS TYR ASN ALA LEU TYR ALA GLN ALA PRO PHE SEQRES 39 A 529 GLY GLY PHE LYS MET SER GLY ASN GLY ARG GLU LEU GLY SEQRES 40 A 529 GLU TYR ALA LEU ALA GLU TYR THR GLU VAL LYS THR VAL SEQRES 41 A 529 THR ILE LYS LEU GLY ASP LYS ASN PRO SEQRES 1 B 529 HIS HIS HIS HIS HIS HIS LEU GLU SER THR SER LEU TYR SEQRES 2 B 529 LYS LYS ALA GLY MET ALA THR ALA ASN GLY ALA VAL GLU SEQRES 3 B 529 ASN GLY GLN PRO ASP ARG LYS PRO PRO ALA LEU PRO ARG SEQRES 4 B 529 PRO ILE ARG ASN LEU GLU VAL LYS PHE THR LYS ILE PHE SEQRES 5 B 529 ILE ASN ASN GLU TRP HIS GLU SER LYS SER GLY LYS LYS SEQRES 6 B 529 PHE ALA THR CYS ASN PRO SER THR ARG GLU GLN ILE CYS SEQRES 7 B 529 GLU VAL GLU GLU GLY ASP LYS PRO ASP VAL ASP LYS ALA SEQRES 8 B 529 VAL GLU ALA ALA GLN VAL ALA PHE GLN ARG GLY SER PRO SEQRES 9 B 529 TRP ARG ARG LEU ASP ALA LEU SER ARG GLY ARG LEU LEU SEQRES 10 B 529 HIS GLN LEU ALA ASP LEU VAL GLU ARG ASP ARG ALA THR SEQRES 11 B 529 LEU ALA ALA LEU GLU THR MET ASP THR GLY LYS PRO PHE SEQRES 12 B 529 LEU HIS ALA PHE PHE ILE ASP LEU GLU GLY CYS ILE ARG SEQRES 13 B 529 THR LEU ARG TYR PHE ALA GLY TRP ALA ASP LYS ILE GLN SEQRES 14 B 529 GLY LYS THR ILE PRO THR ASP ASP ASN VAL VAL CYS PHE SEQRES 15 B 529 THR ARG HIS GLU PRO ILE GLY VAL CYS GLY ALA ILE THR SEQRES 16 B 529 PRO TRP ASN PHE PRO LEU LEU MET LEU VAL TRP LYS LEU SEQRES 17 B 529 ALA PRO ALA LEU CYS CYS GLY ASN THR MET VAL LEU LYS SEQRES 18 B 529 PRO ALA GLU GLN THR PRO LEU THR ALA LEU TYR LEU GLY SEQRES 19 B 529 SER LEU ILE LYS GLU ALA GLY PHE PRO PRO GLY VAL VAL SEQRES 20 B 529 ASN ILE VAL PRO GLY PHE GLY PRO THR VAL GLY ALA ALA SEQRES 21 B 529 ILE SER SER HIS PRO GLN ILE ASN LYS ILE ALA PHE THR SEQRES 22 B 529 GLY SER THR GLU VAL GLY LYS LEU VAL LYS GLU ALA ALA SEQRES 23 B 529 SER ARG SER ASN LEU LYS ARG VAL THR LEU GLU LEU GLY SEQRES 24 B 529 GLY LYS ASN PRO CYS ILE VAL CYS ALA ASP ALA ASP LEU SEQRES 25 B 529 ASP LEU ALA VAL GLU CYS ALA HIS GLN GLY VAL PHE PHE SEQRES 26 B 529 ASN GLN GLY GLN CYS CYS THR ALA ALA SER ARG VAL PHE SEQRES 27 B 529 VAL GLU GLU GLN VAL TYR SER GLU PHE VAL ARG ARG SER SEQRES 28 B 529 VAL GLU TYR ALA LYS LYS ARG PRO VAL GLY ASP PRO PHE SEQRES 29 B 529 ASP VAL LYS THR GLU GLN GLY PRO GLN ILE ASP GLN LYS SEQRES 30 B 529 GLN PHE ASP LYS ILE LEU GLU LEU ILE GLU SER GLY LYS SEQRES 31 B 529 LYS GLU GLY ALA LYS LEU GLU CYS GLY GLY SER ALA MET SEQRES 32 B 529 GLU ASP LYS GLY LEU PHE ILE LYS PRO THR VAL PHE SER SEQRES 33 B 529 GLU VAL THR ASP ASN MET ARG ILE ALA LYS GLU GLU ILE SEQRES 34 B 529 PHE GLY PRO VAL GLN PRO ILE LEU LYS PHE LYS SER ILE SEQRES 35 B 529 GLU GLU VAL ILE LYS ARG ALA ASN SER THR ASP TYR GLY SEQRES 36 B 529 LEU THR ALA ALA VAL PHE THR LYS ASN LEU ASP LYS ALA SEQRES 37 B 529 LEU LYS LEU ALA SER ALA LEU GLU SER GLY THR VAL TRP SEQRES 38 B 529 ILE ASN CYS TYR ASN ALA LEU TYR ALA GLN ALA PRO PHE SEQRES 39 B 529 GLY GLY PHE LYS MET SER GLY ASN GLY ARG GLU LEU GLY SEQRES 40 B 529 GLU TYR ALA LEU ALA GLU TYR THR GLU VAL LYS THR VAL SEQRES 41 B 529 THR ILE LYS LEU GLY ASP LYS ASN PRO HET NAD A 601 44 HET PEG A 602 7 HET GOL A 603 12 HET GOL A 604 6 HET P4C A 605 16 HET GOL A 606 6 HET GOL A 607 6 HET GOL B1301 6 HET NAD B1302 44 HET PEG B1303 7 HET GOL B1304 6 HET GOL B1305 6 HET P4C B1306 10 HET SO4 B1307 5 HET GOL B1308 6 HET GOL B1309 6 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETNAM P4C O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN P4C POLYETHYLENE 400 FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 PEG 2(C4 H10 O3) FORMUL 5 GOL 9(C3 H8 O3) FORMUL 7 P4C 2(C14 H28 O8) FORMUL 16 SO4 O4 S 2- FORMUL 19 HOH *593(H2 O) HELIX 1 AA1 ASP A 67 GLN A 83 1 17 HELIX 2 AA2 SER A 86 LEU A 91 1 6 HELIX 3 AA3 ASP A 92 ASP A 110 1 19 HELIX 4 AA4 ASP A 110 GLY A 123 1 14 HELIX 5 AA5 PRO A 125 ILE A 132 1 8 HELIX 6 AA6 ILE A 132 GLY A 146 1 15 HELIX 7 AA7 TRP A 147 ILE A 151 5 5 HELIX 8 AA8 PHE A 182 CYS A 197 1 16 HELIX 9 AA9 PRO A 210 GLY A 224 1 15 HELIX 10 AB1 THR A 239 SER A 246 1 8 HELIX 11 AB2 SER A 258 SER A 272 1 15 HELIX 12 AB3 ASP A 294 PHE A 308 1 15 HELIX 13 AB4 ASN A 309 GLN A 312 5 4 HELIX 14 AB5 GLU A 324 ARG A 341 1 18 HELIX 15 AB6 ASP A 358 GLY A 376 1 19 HELIX 16 AB7 MET A 405 GLU A 410 1 6 HELIX 17 AB8 SER A 424 ASN A 433 1 10 HELIX 18 AB9 ASN A 447 LEU A 458 1 12 HELIX 19 AC1 PHE A 480 MET A 482 5 3 HELIX 20 AC2 GLY A 490 GLU A 496 5 7 HELIX 21 AC3 ASP B 67 GLN B 83 1 17 HELIX 22 AC4 SER B 86 LEU B 91 1 6 HELIX 23 AC5 ASP B 92 ASP B 110 1 19 HELIX 24 AC6 ASP B 110 GLY B 123 1 14 HELIX 25 AC7 PRO B 125 ILE B 132 1 8 HELIX 26 AC8 ILE B 132 GLY B 146 1 15 HELIX 27 AC9 TRP B 147 ILE B 151 5 5 HELIX 28 AD1 PHE B 182 CYS B 197 1 16 HELIX 29 AD2 PRO B 210 GLY B 224 1 15 HELIX 30 AD3 THR B 239 SER B 246 1 8 HELIX 31 AD4 SER B 258 SER B 272 1 15 HELIX 32 AD5 ASP B 294 PHE B 308 1 15 HELIX 33 AD6 ASN B 309 GLN B 312 5 4 HELIX 34 AD7 VAL B 326 LYS B 340 1 15 HELIX 35 AD8 ASP B 358 GLY B 376 1 19 HELIX 36 AD9 MET B 405 GLU B 410 1 6 HELIX 37 AE1 SER B 424 ASN B 433 1 10 HELIX 38 AE2 ASN B 447 LEU B 458 1 12 HELIX 39 AE3 PHE B 480 MET B 482 5 3 HELIX 40 AE4 GLY B 490 GLU B 496 5 7 SHEET 1 AA1 2 ILE A 34 ILE A 36 0 SHEET 2 AA1 2 GLU A 39 HIS A 41 -1 O HIS A 41 N ILE A 34 SHEET 1 AA2 2 LYS A 48 CYS A 52 0 SHEET 2 AA2 2 GLN A 59 GLU A 64 -1 O ILE A 60 N THR A 51 SHEET 1 AA310 THR A 155 ILE A 156 0 SHEET 2 AA310 VAL A 162 PRO A 170 -1 O CYS A 164 N ILE A 156 SHEET 3 AA310 THR A 498 LYS A 506 -1 O VAL A 503 N PHE A 165 SHEET 4 AA310 THR B 462 ILE B 465 1 O VAL B 463 N THR A 502 SHEET 5 AA310 THR B 440 PHE B 444 1 N ALA B 441 O TRP B 464 SHEET 6 AA310 ASN B 285 VAL B 289 1 N ILE B 288 O ALA B 442 SHEET 7 AA310 ALA B 317 GLU B 323 1 O PHE B 321 N VAL B 289 SHEET 8 AA310 VAL B 416 PHE B 422 1 O LEU B 420 N VAL B 322 SHEET 9 AA310 THR B 396 VAL B 401 1 N THR B 396 O GLN B 417 SHEET 10 AA310 LYS B 378 CYS B 381 -1 N LYS B 378 O SER B 399 SHEET 1 AA4 6 VAL A 230 ILE A 232 0 SHEET 2 AA4 6 THR A 200 LYS A 204 1 N LEU A 203 O ASN A 231 SHEET 3 AA4 6 VAL A 173 ILE A 177 1 N ALA A 176 O LYS A 204 SHEET 4 AA4 6 LYS A 252 THR A 256 1 O LYS A 252 N GLY A 175 SHEET 5 AA4 6 ARG A 276 GLU A 280 1 O ARG A 276 N ILE A 253 SHEET 6 AA4 6 GLY A 484 ASN A 485 -1 O ASN A 485 N LEU A 279 SHEET 1 AA510 LYS A 378 CYS A 381 0 SHEET 2 AA510 THR A 396 VAL A 401 -1 O VAL A 397 N GLU A 380 SHEET 3 AA510 VAL A 416 PHE A 422 1 O GLN A 417 N THR A 396 SHEET 4 AA510 ALA A 317 GLU A 323 1 N VAL A 322 O LEU A 420 SHEET 5 AA510 ASN A 285 VAL A 289 1 N VAL A 289 O PHE A 321 SHEET 6 AA510 THR A 440 PHE A 444 1 O ALA A 442 N ILE A 288 SHEET 7 AA510 THR A 462 ILE A 465 1 O TRP A 464 N ALA A 441 SHEET 8 AA510 THR B 498 LYS B 506 1 O THR B 502 N VAL A 463 SHEET 9 AA510 VAL B 162 PRO B 170 -1 N PHE B 165 O VAL B 503 SHEET 10 AA510 THR B 155 ILE B 156 -1 N ILE B 156 O CYS B 164 SHEET 1 AA6 2 ILE B 34 ILE B 36 0 SHEET 2 AA6 2 GLU B 39 HIS B 41 -1 O HIS B 41 N ILE B 34 SHEET 1 AA7 2 LYS B 48 CYS B 52 0 SHEET 2 AA7 2 GLN B 59 GLU B 64 -1 O ILE B 60 N THR B 51 SHEET 1 AA8 6 VAL B 230 ILE B 232 0 SHEET 2 AA8 6 THR B 200 LYS B 204 1 N LEU B 203 O ASN B 231 SHEET 3 AA8 6 VAL B 173 ILE B 177 1 N CYS B 174 O THR B 200 SHEET 4 AA8 6 LYS B 252 THR B 256 1 O LYS B 252 N GLY B 175 SHEET 5 AA8 6 ARG B 276 GLU B 280 1 O ARG B 276 N ILE B 253 SHEET 6 AA8 6 GLY B 484 ASN B 485 -1 O ASN B 485 N LEU B 279 CRYST1 81.579 89.524 158.637 90.00 90.00 90.00 P 21 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012258 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011170 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006304 0.00000