HEADER HYDROLASE 17-DEC-21 7QKC TITLE CRYSTAL STRUCTURE OF HUMAN CATHEPSIN L AFTER INCUBATION WITH SULFO- TITLE 2 CALPEPTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATHEPSIN L; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTSL, CTSL1; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PHAFFII GS115; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 644223 KEYWDS CATHEPSIN, CYSTEIN PROTEASE, DRUG DEVELOPMENT, DRUG TARGET, PEPTIDE- KEYWDS 2 LIKE INHIBITOR, LYSOSOME, PROTEIN DEGRADATION, SARS-COV-2, COVID-19, KEYWDS 3 SPIKE PROTEIN MATURATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.Y.A.REINKE,S.FALKE,J.LIESKE,W.EWERT,J.LOBODA,A.RAHMANI MASHHOUR, AUTHOR 2 M.HAUSER,K.KARNICAR,A.USENIK,N.LINDIC,M.LACH,H.BOEHLER,T.BECK,R.COX, AUTHOR 3 H.N.CHAPMAN,W.HINRICHS,D.TURK,S.GUENTHER,A.MEENTS REVDAT 3 31-JAN-24 7QKC 1 REMARK REVDAT 2 01-NOV-23 7QKC 1 JRNL REVDAT 1 28-DEC-22 7QKC 0 JRNL AUTH P.Y.A.REINKE,E.E.DE SOUZA,S.GUNTHER,S.FALKE,J.LIESKE, JRNL AUTH 2 W.EWERT,J.LOBODA,A.HERRMANN,A.RAHMANI MASHHOUR,K.KARNICAR, JRNL AUTH 3 A.USENIK,N.LINDIC,A.SEKIRNIK,V.F.BOTOSSO,G.M.M.SANTELLI, JRNL AUTH 4 J.KAPRONEZAI,M.V.DE ARAUJO,T.T.SILVA-PEREIRA,A.F.S.FILHO, JRNL AUTH 5 M.S.TAVARES,L.FLOREZ-ALVAREZ,D.B.L.DE OLIVEIRA,E.L.DURIGON, JRNL AUTH 6 P.R.GIARETTA,M.B.HEINEMANN,M.HAUSER,B.SEYCHELL,H.BOHLER, JRNL AUTH 7 W.RUT,M.DRAG,T.BECK,R.COX,H.N.CHAPMAN,C.BETZEL,W.BREHM, JRNL AUTH 8 W.HINRICHS,G.EBERT,S.L.LATHAM,A.M.S.GUIMARAES,D.TURK, JRNL AUTH 9 C.WRENGER,A.MEENTS JRNL TITL CALPEPTIN IS A POTENT CATHEPSIN INHIBITOR AND DRUG CANDIDATE JRNL TITL 2 FOR SARS-COV-2 INFECTIONS. JRNL REF COMMUN BIOL V. 6 1058 2023 JRNL REFN ESSN 2399-3642 JRNL PMID 37853179 JRNL DOI 10.1038/S42003-023-05317-9 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13-2998_9999 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 87087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.300 REMARK 3 FREE R VALUE TEST SET COUNT : 2001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.2700 - 4.0800 0.99 6150 145 0.1391 0.1625 REMARK 3 2 4.0800 - 3.2300 1.00 6200 147 0.1296 0.1510 REMARK 3 3 3.2300 - 2.8300 0.99 6140 142 0.1468 0.1738 REMARK 3 4 2.8300 - 2.5700 1.00 6211 147 0.1357 0.1763 REMARK 3 5 2.5700 - 2.3800 1.00 6173 140 0.1344 0.1758 REMARK 3 6 2.3800 - 2.2400 1.00 6215 150 0.1321 0.1597 REMARK 3 7 2.2400 - 2.1300 1.00 6156 147 0.1381 0.1934 REMARK 3 8 2.1300 - 2.0400 1.00 6184 136 0.1368 0.1818 REMARK 3 9 2.0400 - 1.9600 1.00 6228 145 0.1404 0.1634 REMARK 3 10 1.9600 - 1.8900 1.00 6180 149 0.1596 0.1918 REMARK 3 11 1.8900 - 1.8300 1.00 6145 147 0.1748 0.2368 REMARK 3 12 1.8300 - 1.7800 0.99 6151 137 0.1961 0.2491 REMARK 3 13 1.7800 - 1.7300 0.97 6040 152 0.2354 0.2993 REMARK 3 14 1.7300 - 1.6900 0.79 4913 117 0.2880 0.3192 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.203 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7159 REMARK 3 ANGLE : 0.970 9668 REMARK 3 CHIRALITY : 0.056 947 REMARK 3 PLANARITY : 0.007 1314 REMARK 3 DIHEDRAL : 16.999 4243 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 32 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.0994 -9.0079 -5.5126 REMARK 3 T TENSOR REMARK 3 T11: 0.2127 T22: 0.2277 REMARK 3 T33: 0.1783 T12: -0.0271 REMARK 3 T13: 0.0452 T23: -0.0648 REMARK 3 L TENSOR REMARK 3 L11: 2.6676 L22: 1.9111 REMARK 3 L33: 1.2338 L12: -0.4104 REMARK 3 L13: 0.3636 L23: 0.1551 REMARK 3 S TENSOR REMARK 3 S11: -0.0887 S12: -0.0347 S13: 0.1600 REMARK 3 S21: -0.0238 S22: 0.0779 S23: -0.1214 REMARK 3 S31: -0.1149 S32: 0.0569 S33: 0.0136 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3935 -16.4592 -12.0065 REMARK 3 T TENSOR REMARK 3 T11: 0.2194 T22: 0.2446 REMARK 3 T33: 0.2085 T12: -0.0489 REMARK 3 T13: 0.0438 T23: -0.0871 REMARK 3 L TENSOR REMARK 3 L11: 2.7696 L22: 1.4544 REMARK 3 L33: 1.8893 L12: 1.1856 REMARK 3 L13: -0.7766 L23: -0.9467 REMARK 3 S TENSOR REMARK 3 S11: -0.1002 S12: 0.0159 S13: -0.1538 REMARK 3 S21: -0.2041 S22: 0.1112 S23: -0.2847 REMARK 3 S31: 0.0437 S32: 0.2081 S33: -0.0413 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6784 -19.8613 -15.6482 REMARK 3 T TENSOR REMARK 3 T11: 0.2530 T22: 0.2360 REMARK 3 T33: 0.1865 T12: -0.0495 REMARK 3 T13: 0.0540 T23: -0.0561 REMARK 3 L TENSOR REMARK 3 L11: 2.0446 L22: 1.2972 REMARK 3 L33: 0.7630 L12: 0.3855 REMARK 3 L13: 0.9792 L23: 0.6326 REMARK 3 S TENSOR REMARK 3 S11: 0.0301 S12: 0.0603 S13: 0.0362 REMARK 3 S21: -0.1548 S22: 0.1150 S23: 0.0388 REMARK 3 S31: -0.0596 S32: -0.0192 S33: -0.0879 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1804 -22.9036 -15.6563 REMARK 3 T TENSOR REMARK 3 T11: 0.2013 T22: 0.1889 REMARK 3 T33: 0.1699 T12: -0.0455 REMARK 3 T13: 0.0239 T23: -0.0466 REMARK 3 L TENSOR REMARK 3 L11: 1.5608 L22: 2.2916 REMARK 3 L33: 2.5128 L12: 0.5941 REMARK 3 L13: 0.6308 L23: 0.8050 REMARK 3 S TENSOR REMARK 3 S11: 0.0127 S12: 0.0839 S13: -0.1355 REMARK 3 S21: -0.1892 S22: 0.1232 S23: -0.0565 REMARK 3 S31: 0.0025 S32: -0.1356 S33: -0.1206 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.1900 -21.3267 -3.9670 REMARK 3 T TENSOR REMARK 3 T11: 0.2309 T22: 0.2179 REMARK 3 T33: 0.3682 T12: 0.0314 REMARK 3 T13: -0.0163 T23: -0.0790 REMARK 3 L TENSOR REMARK 3 L11: 0.7110 L22: 1.7537 REMARK 3 L33: 3.6227 L12: 1.1305 REMARK 3 L13: 0.8150 L23: 1.2949 REMARK 3 S TENSOR REMARK 3 S11: 0.1373 S12: 0.1186 S13: -0.5362 REMARK 3 S21: 0.1713 S22: 0.2867 S23: -0.5796 REMARK 3 S31: 0.3632 S32: 0.1349 S33: -0.4616 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 129 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1672 -11.1709 7.5643 REMARK 3 T TENSOR REMARK 3 T11: 0.1883 T22: 0.2455 REMARK 3 T33: 0.1799 T12: -0.0269 REMARK 3 T13: 0.0041 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.8181 L22: 1.1451 REMARK 3 L33: 2.8565 L12: 0.3485 REMARK 3 L13: 1.1934 L23: 1.5142 REMARK 3 S TENSOR REMARK 3 S11: 0.1180 S12: -0.2157 S13: -0.0953 REMARK 3 S21: 0.1793 S22: -0.0667 S23: 0.0067 REMARK 3 S31: 0.1795 S32: -0.4208 S33: -0.0538 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 187 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5603 -12.9010 2.6313 REMARK 3 T TENSOR REMARK 3 T11: 0.1900 T22: 0.1672 REMARK 3 T33: 0.1997 T12: -0.0390 REMARK 3 T13: -0.0020 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 2.4097 L22: 1.7110 REMARK 3 L33: 1.7543 L12: 0.0287 REMARK 3 L13: 0.5769 L23: 0.8167 REMARK 3 S TENSOR REMARK 3 S11: 0.0722 S12: -0.1507 S13: -0.1097 REMARK 3 S21: 0.1008 S22: 0.0118 S23: -0.2216 REMARK 3 S31: 0.1080 S32: -0.0815 S33: -0.0828 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.9577 6.4987 17.1642 REMARK 3 T TENSOR REMARK 3 T11: 0.1465 T22: 0.1625 REMARK 3 T33: 0.1585 T12: 0.0016 REMARK 3 T13: -0.0023 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 2.7971 L22: 2.3963 REMARK 3 L33: 1.7353 L12: 0.1887 REMARK 3 L13: -0.3806 L23: -0.0574 REMARK 3 S TENSOR REMARK 3 S11: 0.0343 S12: 0.1010 S13: 0.1830 REMARK 3 S21: -0.1103 S22: -0.0132 S23: -0.0301 REMARK 3 S31: -0.0794 S32: -0.0194 S33: -0.0148 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 25 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.1275 2.4914 22.9056 REMARK 3 T TENSOR REMARK 3 T11: 0.1125 T22: 0.0892 REMARK 3 T33: 0.1178 T12: 0.0153 REMARK 3 T13: -0.0014 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 1.1433 L22: 2.1870 REMARK 3 L33: 1.6221 L12: 0.4684 REMARK 3 L13: -0.0670 L23: 0.7153 REMARK 3 S TENSOR REMARK 3 S11: 0.0244 S12: -0.0254 S13: -0.0119 REMARK 3 S21: -0.0693 S22: 0.0299 S23: 0.0345 REMARK 3 S31: -0.0981 S32: 0.0103 S33: 0.0212 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 43 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.2215 -7.7076 23.6704 REMARK 3 T TENSOR REMARK 3 T11: 0.1680 T22: 0.1271 REMARK 3 T33: 0.2006 T12: 0.0271 REMARK 3 T13: -0.0103 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 1.9371 L22: 1.5949 REMARK 3 L33: 0.9756 L12: 0.6533 REMARK 3 L13: 0.1290 L23: -0.6586 REMARK 3 S TENSOR REMARK 3 S11: 0.0698 S12: -0.0666 S13: -0.3142 REMARK 3 S21: 0.0687 S22: 0.0061 S23: -0.1277 REMARK 3 S31: 0.2238 S32: 0.0033 S33: -0.0842 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 81 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.3534 -9.6332 31.6955 REMARK 3 T TENSOR REMARK 3 T11: 0.2371 T22: 0.1720 REMARK 3 T33: 0.2599 T12: 0.0207 REMARK 3 T13: -0.0544 T23: 0.0473 REMARK 3 L TENSOR REMARK 3 L11: 2.4538 L22: 2.0360 REMARK 3 L33: 1.9931 L12: 0.1373 REMARK 3 L13: -0.5752 L23: -0.5087 REMARK 3 S TENSOR REMARK 3 S11: -0.0192 S12: -0.2345 S13: -0.3598 REMARK 3 S21: 0.3197 S22: -0.0940 S23: -0.4282 REMARK 3 S31: 0.2480 S32: 0.1658 S33: 0.0706 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 105 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.9051 5.4911 14.6303 REMARK 3 T TENSOR REMARK 3 T11: 0.1341 T22: 0.1901 REMARK 3 T33: 0.1634 T12: 0.0273 REMARK 3 T13: -0.0184 T23: 0.0233 REMARK 3 L TENSOR REMARK 3 L11: 1.9685 L22: 1.4803 REMARK 3 L33: 1.4968 L12: 0.2103 REMARK 3 L13: -0.0638 L23: -0.3950 REMARK 3 S TENSOR REMARK 3 S11: 0.0135 S12: 0.3380 S13: 0.1131 REMARK 3 S21: -0.0578 S22: 0.1556 S23: 0.0908 REMARK 3 S31: -0.0868 S32: -0.2437 S33: -0.1696 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 129 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.4275 -1.3527 7.1378 REMARK 3 T TENSOR REMARK 3 T11: 0.1528 T22: 0.2648 REMARK 3 T33: 0.1769 T12: -0.0007 REMARK 3 T13: 0.0205 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 2.0548 L22: 0.9692 REMARK 3 L33: 2.0683 L12: 0.0773 REMARK 3 L13: -0.6235 L23: -0.1107 REMARK 3 S TENSOR REMARK 3 S11: -0.1059 S12: 0.4816 S13: -0.2057 REMARK 3 S21: -0.1660 S22: 0.0666 S23: -0.1366 REMARK 3 S31: 0.0934 S32: 0.1152 S33: 0.0085 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 145 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.1087 2.1873 0.8872 REMARK 3 T TENSOR REMARK 3 T11: 0.1554 T22: 0.3406 REMARK 3 T33: 0.1925 T12: -0.0305 REMARK 3 T13: 0.0424 T23: -0.0542 REMARK 3 L TENSOR REMARK 3 L11: 2.0390 L22: 2.8381 REMARK 3 L33: 2.1846 L12: -0.2589 REMARK 3 L13: 0.2360 L23: 0.2354 REMARK 3 S TENSOR REMARK 3 S11: -0.0217 S12: 0.5267 S13: 0.0266 REMARK 3 S21: -0.0246 S22: 0.2309 S23: -0.0430 REMARK 3 S31: -0.0843 S32: 0.2547 S33: -0.1749 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 155 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.0873 5.3315 4.9844 REMARK 3 T TENSOR REMARK 3 T11: 0.1743 T22: 0.3181 REMARK 3 T33: 0.1642 T12: -0.0057 REMARK 3 T13: 0.0166 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 2.1830 L22: 2.6814 REMARK 3 L33: 2.4593 L12: -0.2470 REMARK 3 L13: 0.0305 L23: 0.5942 REMARK 3 S TENSOR REMARK 3 S11: 0.0162 S12: 0.7746 S13: -0.0401 REMARK 3 S21: -0.4354 S22: 0.0963 S23: -0.0632 REMARK 3 S31: -0.0856 S32: 0.0270 S33: -0.0976 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 187 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.1998 0.1513 12.8999 REMARK 3 T TENSOR REMARK 3 T11: 0.1481 T22: 0.2371 REMARK 3 T33: 0.1751 T12: 0.0003 REMARK 3 T13: -0.0130 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 3.0981 L22: 5.0749 REMARK 3 L33: 3.9009 L12: 0.9562 REMARK 3 L13: -0.9926 L23: -0.5480 REMARK 3 S TENSOR REMARK 3 S11: 0.0972 S12: 0.3587 S13: -0.1102 REMARK 3 S21: 0.1154 S22: -0.0939 S23: -0.1219 REMARK 3 S31: -0.1592 S32: 0.4135 S33: -0.0310 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 198 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.6285 6.3132 2.5207 REMARK 3 T TENSOR REMARK 3 T11: 0.1779 T22: 0.3042 REMARK 3 T33: 0.1438 T12: -0.0045 REMARK 3 T13: 0.0130 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 2.4901 L22: 1.4232 REMARK 3 L33: 1.7997 L12: -0.7350 REMARK 3 L13: 1.2464 L23: -0.8417 REMARK 3 S TENSOR REMARK 3 S11: -0.0751 S12: 0.6429 S13: -0.0548 REMARK 3 S21: -0.1078 S22: 0.1068 S23: 0.0097 REMARK 3 S31: -0.1785 S32: 0.1724 S33: -0.0293 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 208 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.8068 2.0478 11.3202 REMARK 3 T TENSOR REMARK 3 T11: 0.1437 T22: 0.2003 REMARK 3 T33: 0.1647 T12: 0.0005 REMARK 3 T13: -0.0114 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 1.6847 L22: 1.1237 REMARK 3 L33: 2.7859 L12: 0.1167 REMARK 3 L13: -0.5462 L23: -0.2606 REMARK 3 S TENSOR REMARK 3 S11: -0.0608 S12: 0.2525 S13: -0.0674 REMARK 3 S21: -0.0486 S22: 0.0168 S23: 0.0622 REMARK 3 S31: 0.0063 S32: -0.0626 S33: -0.0060 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 2 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.3701 5.3631 -11.9921 REMARK 3 T TENSOR REMARK 3 T11: 0.3035 T22: 0.3044 REMARK 3 T33: 0.1871 T12: -0.0933 REMARK 3 T13: 0.0274 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 1.8128 L22: 1.8016 REMARK 3 L33: 1.9166 L12: 0.0764 REMARK 3 L13: -0.7020 L23: -0.3804 REMARK 3 S TENSOR REMARK 3 S11: -0.1213 S12: 0.2727 S13: -0.1731 REMARK 3 S21: -0.0466 S22: 0.1700 S23: 0.1302 REMARK 3 S31: 0.1950 S32: -0.3966 S33: -0.0440 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 25 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2373 8.7264 -18.5842 REMARK 3 T TENSOR REMARK 3 T11: 0.2419 T22: 0.2245 REMARK 3 T33: 0.1646 T12: -0.0522 REMARK 3 T13: 0.0295 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 1.0810 L22: 2.2992 REMARK 3 L33: 1.7934 L12: 0.0435 REMARK 3 L13: -0.0338 L23: 0.5437 REMARK 3 S TENSOR REMARK 3 S11: -0.1980 S12: 0.2233 S13: -0.1145 REMARK 3 S21: -0.1718 S22: 0.1167 S23: 0.0559 REMARK 3 S31: 0.2188 S32: -0.0577 S33: 0.0571 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 43 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.1257 17.1549 -15.4827 REMARK 3 T TENSOR REMARK 3 T11: 0.1951 T22: 0.1924 REMARK 3 T33: 0.1445 T12: -0.0279 REMARK 3 T13: -0.0033 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 2.3162 L22: 1.7341 REMARK 3 L33: 2.0958 L12: 0.8516 REMARK 3 L13: -0.6237 L23: -1.1424 REMARK 3 S TENSOR REMARK 3 S11: -0.0644 S12: 0.1203 S13: 0.0735 REMARK 3 S21: 0.0120 S22: 0.0073 S23: -0.1144 REMARK 3 S31: -0.0470 S32: 0.0959 S33: 0.0684 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 81 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.9854 11.7152 -11.7226 REMARK 3 T TENSOR REMARK 3 T11: 0.1899 T22: 0.2698 REMARK 3 T33: 0.2236 T12: 0.0000 REMARK 3 T13: -0.0111 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 2.4333 L22: 2.1928 REMARK 3 L33: 2.6096 L12: 0.3403 REMARK 3 L13: -0.4006 L23: -0.4907 REMARK 3 S TENSOR REMARK 3 S11: 0.0248 S12: -0.2625 S13: -0.1323 REMARK 3 S21: 0.1605 S22: -0.0142 S23: -0.2536 REMARK 3 S31: 0.0259 S32: 0.4923 S33: -0.0491 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 105 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4854 14.5807 -23.0541 REMARK 3 T TENSOR REMARK 3 T11: 0.2796 T22: 0.4350 REMARK 3 T33: 0.2249 T12: -0.0356 REMARK 3 T13: -0.0166 T23: 0.1144 REMARK 3 L TENSOR REMARK 3 L11: 1.2964 L22: 1.3417 REMARK 3 L33: 1.7849 L12: 0.4678 REMARK 3 L13: -0.8383 L23: 0.0734 REMARK 3 S TENSOR REMARK 3 S11: -0.1490 S12: 0.5401 S13: 0.2532 REMARK 3 S21: -0.1191 S22: 0.2792 S23: 0.2291 REMARK 3 S31: -0.0051 S32: -0.5460 S33: -0.1226 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 129 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6505 14.6880 -4.1852 REMARK 3 T TENSOR REMARK 3 T11: 0.2714 T22: 0.3602 REMARK 3 T33: 0.2576 T12: -0.0170 REMARK 3 T13: 0.0661 T23: 0.0475 REMARK 3 L TENSOR REMARK 3 L11: 0.8777 L22: 0.9897 REMARK 3 L33: 1.5156 L12: 0.1887 REMARK 3 L13: -0.2605 L23: -0.1653 REMARK 3 S TENSOR REMARK 3 S11: 0.0863 S12: 0.2627 S13: 0.3225 REMARK 3 S21: 0.2308 S22: 0.1059 S23: 0.2564 REMARK 3 S31: -0.0224 S32: -0.7514 S33: -0.1393 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 155 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9847 13.2606 -10.7322 REMARK 3 T TENSOR REMARK 3 T11: 0.2700 T22: 0.5235 REMARK 3 T33: 0.3307 T12: 0.0033 REMARK 3 T13: 0.0809 T23: 0.1164 REMARK 3 L TENSOR REMARK 3 L11: 2.3149 L22: 2.5852 REMARK 3 L33: 1.6343 L12: 0.6458 REMARK 3 L13: 0.2501 L23: 0.5282 REMARK 3 S TENSOR REMARK 3 S11: 0.0481 S12: 0.1884 S13: 0.4182 REMARK 3 S21: 0.2973 S22: 0.1120 S23: 0.7406 REMARK 3 S31: -0.1403 S32: -0.9532 S33: -0.0784 REMARK 3 TLS GROUP : 26 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 187 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8173 12.8118 -9.9101 REMARK 3 T TENSOR REMARK 3 T11: 0.2157 T22: 0.3272 REMARK 3 T33: 0.2364 T12: -0.0087 REMARK 3 T13: 0.0253 T23: 0.0660 REMARK 3 L TENSOR REMARK 3 L11: 1.9911 L22: 1.3896 REMARK 3 L33: 1.9164 L12: 0.3552 REMARK 3 L13: -0.7056 L23: -0.1960 REMARK 3 S TENSOR REMARK 3 S11: 0.0229 S12: 0.2505 S13: 0.1473 REMARK 3 S21: 0.0407 S22: 0.1551 S23: 0.3577 REMARK 3 S31: -0.0010 S32: -0.6113 S33: -0.1234 REMARK 3 TLS GROUP : 27 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1219 11.9008 24.2800 REMARK 3 T TENSOR REMARK 3 T11: 0.1529 T22: 0.1327 REMARK 3 T33: 0.1405 T12: 0.0225 REMARK 3 T13: 0.0051 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 2.1427 L22: 1.2235 REMARK 3 L33: 1.6926 L12: -0.1116 REMARK 3 L13: 0.4786 L23: 0.1271 REMARK 3 S TENSOR REMARK 3 S11: 0.0806 S12: -0.0789 S13: -0.0871 REMARK 3 S21: -0.0439 S22: -0.0370 S23: 0.1205 REMARK 3 S31: 0.1810 S32: 0.0023 S33: -0.0204 REMARK 3 TLS GROUP : 28 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 25 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3001 20.0290 29.7462 REMARK 3 T TENSOR REMARK 3 T11: 0.1975 T22: 0.1337 REMARK 3 T33: 0.1871 T12: 0.0095 REMARK 3 T13: 0.0278 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 2.6042 L22: 1.6074 REMARK 3 L33: 2.1703 L12: 0.9754 REMARK 3 L13: -0.9745 L23: -0.6829 REMARK 3 S TENSOR REMARK 3 S11: 0.0259 S12: -0.1320 S13: 0.0807 REMARK 3 S21: 0.1290 S22: -0.0746 S23: 0.1459 REMARK 3 S31: -0.0047 S32: -0.0939 S33: 0.0574 REMARK 3 TLS GROUP : 29 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 43 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0106 30.4704 25.5567 REMARK 3 T TENSOR REMARK 3 T11: 0.1950 T22: 0.1336 REMARK 3 T33: 0.2306 T12: 0.0240 REMARK 3 T13: 0.0049 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.7905 L22: 2.5844 REMARK 3 L33: 1.2687 L12: 0.3347 REMARK 3 L13: -0.0465 L23: -0.0279 REMARK 3 S TENSOR REMARK 3 S11: 0.0190 S12: 0.0715 S13: 0.2790 REMARK 3 S21: -0.0016 S22: -0.0474 S23: 0.1875 REMARK 3 S31: -0.1264 S32: -0.1015 S33: 0.0130 REMARK 3 TLS GROUP : 30 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 105 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6010 15.8601 35.0662 REMARK 3 T TENSOR REMARK 3 T11: 0.2265 T22: 0.1765 REMARK 3 T33: 0.1530 T12: -0.0064 REMARK 3 T13: -0.0119 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 2.3388 L22: 1.5051 REMARK 3 L33: 1.1550 L12: 0.0576 REMARK 3 L13: 0.0985 L23: 0.2278 REMARK 3 S TENSOR REMARK 3 S11: -0.0363 S12: -0.1536 S13: 0.1311 REMARK 3 S21: 0.3510 S22: 0.0288 S23: -0.2054 REMARK 3 S31: 0.0376 S32: 0.1083 S33: -0.0066 REMARK 3 TLS GROUP : 31 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 129 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4547 8.6701 18.9547 REMARK 3 T TENSOR REMARK 3 T11: 0.1076 T22: 0.1208 REMARK 3 T33: 0.1363 T12: 0.0165 REMARK 3 T13: -0.0081 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 1.2912 L22: 2.3875 REMARK 3 L33: 2.3908 L12: -0.0495 REMARK 3 L13: -0.2810 L23: 0.1728 REMARK 3 S TENSOR REMARK 3 S11: 0.0301 S12: 0.0745 S13: -0.0174 REMARK 3 S21: -0.0381 S22: -0.0412 S23: -0.1446 REMARK 3 S31: 0.0862 S32: 0.0938 S33: -0.0010 REMARK 3 TLS GROUP : 32 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 198 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5499 10.9817 26.3329 REMARK 3 T TENSOR REMARK 3 T11: 0.1816 T22: 0.1383 REMARK 3 T33: 0.1802 T12: 0.0002 REMARK 3 T13: -0.0102 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.1263 L22: 1.0351 REMARK 3 L33: 0.7487 L12: -0.3161 REMARK 3 L13: 0.1232 L23: 0.0714 REMARK 3 S TENSOR REMARK 3 S11: 0.0490 S12: -0.0728 S13: 0.0463 REMARK 3 S21: 0.0858 S22: -0.0410 S23: -0.0689 REMARK 3 S31: 0.0296 S32: 0.0752 S33: -0.0128 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QKC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1292118592. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87205 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 44.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.17050 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 1.24400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.570 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3OF9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MATURE CATHEPSIN L AT A CONCENTRATION REMARK 280 OF 7 MG/ML WAS EQUILIBRATED AGAINST 27% W/V PEG 8000, 1 MM TCEP REMARK 280 AND 0.1 M SODIUM ACETATE AT PH 4.0. CRYSTALS, WHICH GREW AT 293 REMARK 280 K TO FINAL SIZE AFTER APPROXIMATELY 3 DAYS, WERE TRANSFERRED TO REMARK 280 A COMPOUND SOAKING SOLUTION CONTAINING 22% W/V PEG 8000, 1 MM REMARK 280 TCEP AND 0.1 M SODIUM ACETATE AT PH 4.0 AS WELL AS 5% V/V DMSO REMARK 280 AND 10% V/V PEG 400., VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR B 175 REMARK 465 GLU B 176 REMARK 465 SER B 177 REMARK 465 ASP B 178 REMARK 465 ALA C 1 REMARK 465 THR C 175 REMARK 465 GLU C 176 REMARK 465 SER C 177 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 21 59.64 -105.29 REMARK 500 ARG A 205 66.34 -119.34 REMARK 500 CYS A 209 17.01 59.09 REMARK 500 GLN B 21 41.61 -96.88 REMARK 500 ARG B 205 70.36 -115.41 REMARK 500 ALA B 214 55.39 -148.39 REMARK 500 ALA C 214 60.66 -151.69 REMARK 500 GLN D 21 47.64 -100.88 REMARK 500 SER D 174 -158.96 58.40 REMARK 500 ALA D 214 58.55 -146.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE BOUND FORM OF CALPEPTIN (RN2) IN THIS ENTRY WAS DERIVED BY REMARK 600 INCUBATION OF CATHEPSIN L WITH THE PRECURSOR SULFO-CALPEPTIN, A REMARK 600 MODIFIED FORM OF CALPEPTIN THAT IS SULFONATED AT ITS C-TERMINUS TO REMARK 600 MASK THE ALDEHYDE GROUP. REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: CALPEPTIN REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 RN2 A 303 REMARK 630 RN2 B 302 REMARK 630 RN2 C 304 REMARK 630 RN2 D 302 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: NULL REMARK 630 DETAILS: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7QKA RELATED DB: PDB REMARK 900 RELATED ID: 7QKB RELATED DB: PDB DBREF 7QKC A 1 220 UNP P07711 CATL1_HUMAN 114 333 DBREF 7QKC B 1 220 UNP P07711 CATL1_HUMAN 114 333 DBREF 7QKC C 1 220 UNP P07711 CATL1_HUMAN 114 333 DBREF 7QKC D 1 220 UNP P07711 CATL1_HUMAN 114 333 SEQADV 7QKC ALA A 110 UNP P07711 THR 223 ENGINEERED MUTATION SEQADV 7QKC ALA B 110 UNP P07711 THR 223 ENGINEERED MUTATION SEQADV 7QKC ALA C 110 UNP P07711 THR 223 ENGINEERED MUTATION SEQADV 7QKC ALA D 110 UNP P07711 THR 223 ENGINEERED MUTATION SEQRES 1 A 220 ALA PRO ARG SER VAL ASP TRP ARG GLU LYS GLY TYR VAL SEQRES 2 A 220 THR PRO VAL LYS ASN GLN GLY GLN CYS GLY SER CYS TRP SEQRES 3 A 220 ALA PHE SER ALA THR GLY ALA LEU GLU GLY GLN MET PHE SEQRES 4 A 220 ARG LYS THR GLY ARG LEU ILE SER LEU SER GLU GLN ASN SEQRES 5 A 220 LEU VAL ASP CYS SER GLY PRO GLN GLY ASN GLU GLY CYS SEQRES 6 A 220 ASN GLY GLY LEU MET ASP TYR ALA PHE GLN TYR VAL GLN SEQRES 7 A 220 ASP ASN GLY GLY LEU ASP SER GLU GLU SER TYR PRO TYR SEQRES 8 A 220 GLU ALA THR GLU GLU SER CYS LYS TYR ASN PRO LYS TYR SEQRES 9 A 220 SER VAL ALA ASN ASP ALA GLY PHE VAL ASP ILE PRO LYS SEQRES 10 A 220 GLN GLU LYS ALA LEU MET LYS ALA VAL ALA THR VAL GLY SEQRES 11 A 220 PRO ILE SER VAL ALA ILE ASP ALA GLY HIS GLU SER PHE SEQRES 12 A 220 LEU PHE TYR LYS GLU GLY ILE TYR PHE GLU PRO ASP CYS SEQRES 13 A 220 SER SER GLU ASP MET ASP HIS GLY VAL LEU VAL VAL GLY SEQRES 14 A 220 TYR GLY PHE GLU SER THR GLU SER ASP ASN ASN LYS TYR SEQRES 15 A 220 TRP LEU VAL LYS ASN SER TRP GLY GLU GLU TRP GLY MET SEQRES 16 A 220 GLY GLY TYR VAL LYS MET ALA LYS ASP ARG ARG ASN HIS SEQRES 17 A 220 CYS GLY ILE ALA SER ALA ALA SER TYR PRO THR VAL SEQRES 1 B 220 ALA PRO ARG SER VAL ASP TRP ARG GLU LYS GLY TYR VAL SEQRES 2 B 220 THR PRO VAL LYS ASN GLN GLY GLN CYS GLY SER CYS TRP SEQRES 3 B 220 ALA PHE SER ALA THR GLY ALA LEU GLU GLY GLN MET PHE SEQRES 4 B 220 ARG LYS THR GLY ARG LEU ILE SER LEU SER GLU GLN ASN SEQRES 5 B 220 LEU VAL ASP CYS SER GLY PRO GLN GLY ASN GLU GLY CYS SEQRES 6 B 220 ASN GLY GLY LEU MET ASP TYR ALA PHE GLN TYR VAL GLN SEQRES 7 B 220 ASP ASN GLY GLY LEU ASP SER GLU GLU SER TYR PRO TYR SEQRES 8 B 220 GLU ALA THR GLU GLU SER CYS LYS TYR ASN PRO LYS TYR SEQRES 9 B 220 SER VAL ALA ASN ASP ALA GLY PHE VAL ASP ILE PRO LYS SEQRES 10 B 220 GLN GLU LYS ALA LEU MET LYS ALA VAL ALA THR VAL GLY SEQRES 11 B 220 PRO ILE SER VAL ALA ILE ASP ALA GLY HIS GLU SER PHE SEQRES 12 B 220 LEU PHE TYR LYS GLU GLY ILE TYR PHE GLU PRO ASP CYS SEQRES 13 B 220 SER SER GLU ASP MET ASP HIS GLY VAL LEU VAL VAL GLY SEQRES 14 B 220 TYR GLY PHE GLU SER THR GLU SER ASP ASN ASN LYS TYR SEQRES 15 B 220 TRP LEU VAL LYS ASN SER TRP GLY GLU GLU TRP GLY MET SEQRES 16 B 220 GLY GLY TYR VAL LYS MET ALA LYS ASP ARG ARG ASN HIS SEQRES 17 B 220 CYS GLY ILE ALA SER ALA ALA SER TYR PRO THR VAL SEQRES 1 C 220 ALA PRO ARG SER VAL ASP TRP ARG GLU LYS GLY TYR VAL SEQRES 2 C 220 THR PRO VAL LYS ASN GLN GLY GLN CYS GLY SER CYS TRP SEQRES 3 C 220 ALA PHE SER ALA THR GLY ALA LEU GLU GLY GLN MET PHE SEQRES 4 C 220 ARG LYS THR GLY ARG LEU ILE SER LEU SER GLU GLN ASN SEQRES 5 C 220 LEU VAL ASP CYS SER GLY PRO GLN GLY ASN GLU GLY CYS SEQRES 6 C 220 ASN GLY GLY LEU MET ASP TYR ALA PHE GLN TYR VAL GLN SEQRES 7 C 220 ASP ASN GLY GLY LEU ASP SER GLU GLU SER TYR PRO TYR SEQRES 8 C 220 GLU ALA THR GLU GLU SER CYS LYS TYR ASN PRO LYS TYR SEQRES 9 C 220 SER VAL ALA ASN ASP ALA GLY PHE VAL ASP ILE PRO LYS SEQRES 10 C 220 GLN GLU LYS ALA LEU MET LYS ALA VAL ALA THR VAL GLY SEQRES 11 C 220 PRO ILE SER VAL ALA ILE ASP ALA GLY HIS GLU SER PHE SEQRES 12 C 220 LEU PHE TYR LYS GLU GLY ILE TYR PHE GLU PRO ASP CYS SEQRES 13 C 220 SER SER GLU ASP MET ASP HIS GLY VAL LEU VAL VAL GLY SEQRES 14 C 220 TYR GLY PHE GLU SER THR GLU SER ASP ASN ASN LYS TYR SEQRES 15 C 220 TRP LEU VAL LYS ASN SER TRP GLY GLU GLU TRP GLY MET SEQRES 16 C 220 GLY GLY TYR VAL LYS MET ALA LYS ASP ARG ARG ASN HIS SEQRES 17 C 220 CYS GLY ILE ALA SER ALA ALA SER TYR PRO THR VAL SEQRES 1 D 220 ALA PRO ARG SER VAL ASP TRP ARG GLU LYS GLY TYR VAL SEQRES 2 D 220 THR PRO VAL LYS ASN GLN GLY GLN CYS GLY SER CYS TRP SEQRES 3 D 220 ALA PHE SER ALA THR GLY ALA LEU GLU GLY GLN MET PHE SEQRES 4 D 220 ARG LYS THR GLY ARG LEU ILE SER LEU SER GLU GLN ASN SEQRES 5 D 220 LEU VAL ASP CYS SER GLY PRO GLN GLY ASN GLU GLY CYS SEQRES 6 D 220 ASN GLY GLY LEU MET ASP TYR ALA PHE GLN TYR VAL GLN SEQRES 7 D 220 ASP ASN GLY GLY LEU ASP SER GLU GLU SER TYR PRO TYR SEQRES 8 D 220 GLU ALA THR GLU GLU SER CYS LYS TYR ASN PRO LYS TYR SEQRES 9 D 220 SER VAL ALA ASN ASP ALA GLY PHE VAL ASP ILE PRO LYS SEQRES 10 D 220 GLN GLU LYS ALA LEU MET LYS ALA VAL ALA THR VAL GLY SEQRES 11 D 220 PRO ILE SER VAL ALA ILE ASP ALA GLY HIS GLU SER PHE SEQRES 12 D 220 LEU PHE TYR LYS GLU GLY ILE TYR PHE GLU PRO ASP CYS SEQRES 13 D 220 SER SER GLU ASP MET ASP HIS GLY VAL LEU VAL VAL GLY SEQRES 14 D 220 TYR GLY PHE GLU SER THR GLU SER ASP ASN ASN LYS TYR SEQRES 15 D 220 TRP LEU VAL LYS ASN SER TRP GLY GLU GLU TRP GLY MET SEQRES 16 D 220 GLY GLY TYR VAL LYS MET ALA LYS ASP ARG ARG ASN HIS SEQRES 17 D 220 CYS GLY ILE ALA SER ALA ALA SER TYR PRO THR VAL HET PEG A 301 17 HET PEG A 302 17 HET RN2 A 303 57 HET PEG B 301 17 HET RN2 B 302 57 HET PEG C 301 17 HET PEG C 302 17 HET PEG C 303 17 HET RN2 C 304 57 HET PEG D 301 17 HET RN2 D 302 57 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM RN2 CALPEPTIN FORMUL 5 PEG 7(C4 H10 O3) FORMUL 7 RN2 4(C20 H32 N2 O4) FORMUL 16 HOH *670(H2 O) HELIX 1 AA1 ARG A 8 GLY A 11 5 4 HELIX 2 AA2 SER A 24 GLY A 43 1 20 HELIX 3 AA3 SER A 49 SER A 57 1 9 HELIX 4 AA4 GLY A 58 GLY A 61 5 4 HELIX 5 AA5 GLU A 63 GLY A 67 5 5 HELIX 6 AA6 LEU A 69 GLY A 81 1 13 HELIX 7 AA7 ASN A 101 LYS A 103 5 3 HELIX 8 AA8 GLN A 118 VAL A 129 1 12 HELIX 9 AA9 HIS A 140 PHE A 145 1 6 HELIX 10 AB1 ASN A 207 ILE A 211 5 5 HELIX 11 AB2 ARG B 8 GLY B 11 5 4 HELIX 12 AB3 SER B 24 GLY B 43 1 20 HELIX 13 AB4 SER B 49 SER B 57 1 9 HELIX 14 AB5 GLY B 58 GLY B 61 5 4 HELIX 15 AB6 GLU B 63 GLY B 67 5 5 HELIX 16 AB7 LEU B 69 GLY B 81 1 13 HELIX 17 AB8 ASN B 101 LYS B 103 5 3 HELIX 18 AB9 GLN B 118 VAL B 129 1 12 HELIX 19 AC1 HIS B 140 PHE B 145 1 6 HELIX 20 AC2 ASN B 207 ILE B 211 5 5 HELIX 21 AC3 ARG C 8 GLY C 11 5 4 HELIX 22 AC4 SER C 24 GLY C 43 1 20 HELIX 23 AC5 SER C 49 SER C 57 1 9 HELIX 24 AC6 GLY C 58 GLY C 61 5 4 HELIX 25 AC7 GLU C 63 GLY C 67 5 5 HELIX 26 AC8 LEU C 69 GLY C 81 1 13 HELIX 27 AC9 ASN C 101 LYS C 103 5 3 HELIX 28 AD1 GLN C 118 VAL C 129 1 12 HELIX 29 AD2 HIS C 140 PHE C 145 1 6 HELIX 30 AD3 ASN C 207 ILE C 211 5 5 HELIX 31 AD4 ARG D 8 GLY D 11 5 4 HELIX 32 AD5 SER D 24 GLY D 43 1 20 HELIX 33 AD6 SER D 49 SER D 57 1 9 HELIX 34 AD7 GLY D 58 GLY D 61 5 4 HELIX 35 AD8 GLU D 63 GLY D 67 5 5 HELIX 36 AD9 LEU D 69 GLY D 81 1 13 HELIX 37 AE1 ASN D 101 LYS D 103 5 3 HELIX 38 AE2 GLN D 118 VAL D 129 1 12 HELIX 39 AE3 HIS D 140 PHE D 145 1 6 HELIX 40 AE4 THR D 175 ASN D 179 5 5 HELIX 41 AE5 ASN D 207 ILE D 211 5 5 SHEET 1 AA1 3 VAL A 5 ASP A 6 0 SHEET 2 AA1 3 HIS A 163 PHE A 172 -1 O TYR A 170 N VAL A 5 SHEET 3 AA1 3 ILE A 132 ILE A 136 -1 N ILE A 136 O HIS A 163 SHEET 1 AA2 5 VAL A 5 ASP A 6 0 SHEET 2 AA2 5 HIS A 163 PHE A 172 -1 O TYR A 170 N VAL A 5 SHEET 3 AA2 5 LYS A 181 LYS A 186 -1 O LYS A 186 N LEU A 166 SHEET 4 AA2 5 TYR A 198 ALA A 202 -1 O MET A 201 N TRP A 183 SHEET 5 AA2 5 ILE A 150 TYR A 151 1 N TYR A 151 O LYS A 200 SHEET 1 AA3 2 LEU A 83 ASP A 84 0 SHEET 2 AA3 2 SER A 105 ALA A 107 -1 O VAL A 106 N LEU A 83 SHEET 1 AA4 2 PHE A 112 ASP A 114 0 SHEET 2 AA4 2 SER A 216 PRO A 218 -1 O TYR A 217 N VAL A 113 SHEET 1 AA5 3 VAL B 5 ASP B 6 0 SHEET 2 AA5 3 HIS B 163 GLY B 171 -1 O TYR B 170 N VAL B 5 SHEET 3 AA5 3 ILE B 132 ILE B 136 -1 N ILE B 136 O HIS B 163 SHEET 1 AA6 5 VAL B 5 ASP B 6 0 SHEET 2 AA6 5 HIS B 163 GLY B 171 -1 O TYR B 170 N VAL B 5 SHEET 3 AA6 5 TYR B 182 LYS B 186 -1 O LYS B 186 N LEU B 166 SHEET 4 AA6 5 TYR B 198 ALA B 202 -1 O MET B 201 N TRP B 183 SHEET 5 AA6 5 ILE B 150 TYR B 151 1 N TYR B 151 O LYS B 200 SHEET 1 AA7 2 LEU B 83 ASP B 84 0 SHEET 2 AA7 2 SER B 105 ALA B 107 -1 O VAL B 106 N LEU B 83 SHEET 1 AA8 2 PHE B 112 ASP B 114 0 SHEET 2 AA8 2 SER B 216 PRO B 218 -1 O TYR B 217 N VAL B 113 SHEET 1 AA9 3 VAL C 5 ASP C 6 0 SHEET 2 AA9 3 HIS C 163 GLY C 171 -1 O TYR C 170 N VAL C 5 SHEET 3 AA9 3 ILE C 132 ILE C 136 -1 N VAL C 134 O VAL C 165 SHEET 1 AB1 5 VAL C 5 ASP C 6 0 SHEET 2 AB1 5 HIS C 163 GLY C 171 -1 O TYR C 170 N VAL C 5 SHEET 3 AB1 5 TYR C 182 LYS C 186 -1 O LEU C 184 N VAL C 168 SHEET 4 AB1 5 TYR C 198 ALA C 202 -1 O MET C 201 N TRP C 183 SHEET 5 AB1 5 ILE C 150 TYR C 151 1 N TYR C 151 O LYS C 200 SHEET 1 AB2 2 LEU C 83 ASP C 84 0 SHEET 2 AB2 2 SER C 105 ALA C 107 -1 O VAL C 106 N LEU C 83 SHEET 1 AB3 2 PHE C 112 ASP C 114 0 SHEET 2 AB3 2 SER C 216 PRO C 218 -1 O TYR C 217 N VAL C 113 SHEET 1 AB4 3 VAL D 5 ASP D 6 0 SHEET 2 AB4 3 HIS D 163 GLU D 173 -1 O TYR D 170 N VAL D 5 SHEET 3 AB4 3 ILE D 132 ILE D 136 -1 N ILE D 132 O VAL D 167 SHEET 1 AB5 5 VAL D 5 ASP D 6 0 SHEET 2 AB5 5 HIS D 163 GLU D 173 -1 O TYR D 170 N VAL D 5 SHEET 3 AB5 5 ASN D 180 LYS D 186 -1 O LYS D 186 N LEU D 166 SHEET 4 AB5 5 TYR D 198 ALA D 202 -1 O MET D 201 N TRP D 183 SHEET 5 AB5 5 ILE D 150 TYR D 151 1 N TYR D 151 O LYS D 200 SHEET 1 AB6 2 LEU D 83 ASP D 84 0 SHEET 2 AB6 2 SER D 105 ALA D 107 -1 O VAL D 106 N LEU D 83 SHEET 1 AB7 2 PHE D 112 ASP D 114 0 SHEET 2 AB7 2 SER D 216 PRO D 218 -1 O TYR D 217 N VAL D 113 SSBOND 1 CYS A 22 CYS A 65 1555 1555 2.05 SSBOND 2 CYS A 56 CYS A 98 1555 1555 2.05 SSBOND 3 CYS A 156 CYS A 209 1555 1555 2.06 SSBOND 4 CYS B 22 CYS B 65 1555 1555 2.05 SSBOND 5 CYS B 56 CYS B 98 1555 1555 2.04 SSBOND 6 CYS B 156 CYS B 209 1555 1555 2.03 SSBOND 7 CYS C 22 CYS C 65 1555 1555 2.04 SSBOND 8 CYS C 56 CYS C 98 1555 1555 2.03 SSBOND 9 CYS C 156 CYS C 209 1555 1555 2.06 SSBOND 10 CYS D 22 CYS D 65 1555 1555 2.05 SSBOND 11 CYS D 56 CYS D 98 1555 1555 2.04 SSBOND 12 CYS D 156 CYS D 209 1555 1555 2.04 LINK SG CYS A 25 C25 RN2 A 303 1555 1555 1.90 LINK SG CYS B 25 C25 RN2 B 302 1555 1555 1.87 LINK SG CYS C 25 C25 RN2 C 304 1555 1555 1.86 LINK SG CYS D 25 C25 RN2 D 302 1555 1555 1.82 CRYST1 57.050 62.460 67.540 105.32 93.91 115.39 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017528 0.008319 0.004132 0.00000 SCALE2 0.000000 0.017722 0.006104 0.00000 SCALE3 0.000000 0.000000 0.015696 0.00000