HEADER HYDROLASE 17-DEC-21 7QKD TITLE CRYSTAL STRUCTURE OF HUMAN CATHEPSIN L IN COMPLEX WITH COVALENTLY TITLE 2 BOUND MG132 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATHEPSIN L; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTSL, CTSL1; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PHAFFII GS115; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 644223 KEYWDS CATHEPSIN, CYSTEIN PROTEASE, DRUG DEVELOPMENT, DRUG TARGET, PEPTIDE- KEYWDS 2 LIKE INHIBITOR, LYSOSOME, PROTEIN DEGRADATION, SARS-COV-2, COVID-19, KEYWDS 3 SPIKE PROTEIN MATURATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.Y.A.REINKE,S.FALKE,J.LIESKE,W.EWERT,J.LOBODA,A.RAHMANI MASHHOUR, AUTHOR 2 M.HAUSER,K.KARNICAR,A.USENIK,N.LINDIC,M.LACH,H.BOEHLER,T.BECK,R.COX, AUTHOR 3 H.N.CHAPMAN,W.HINRICHS,D.TURK,S.GUENTHER,A.MEENTS REVDAT 3 15-MAY-24 7QKD 1 JRNL REVDAT 2 31-JAN-24 7QKD 1 REMARK REVDAT 1 28-DEC-22 7QKD 0 JRNL AUTH S.FALKE,J.LIESKE,A.HERRMANN,J.LOBODA,K.KARNICAR,S.GUNTHER, JRNL AUTH 2 P.Y.A.REINKE,W.EWERT,A.USENIK,N.LINDIC,A.SEKIRNIK,K.DRETNIK, JRNL AUTH 3 H.TSUGE,V.TURK,H.N.CHAPMAN,W.HINRICHS,G.EBERT,D.TURK, JRNL AUTH 4 A.MEENTS JRNL TITL STRUCTURAL ELUCIDATION AND ANTIVIRAL ACTIVITY OF COVALENT JRNL TITL 2 CATHEPSIN L INHIBITORS. JRNL REF J.MED.CHEM. 2024 JRNL REFN ISSN 0022-2623 JRNL PMID 38630165 JRNL DOI 10.1021/ACS.JMEDCHEM.3C02351 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13-2998_9999 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 3 NUMBER OF REFLECTIONS : 118538 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.490 REMARK 3 FREE R VALUE TEST SET COUNT : 3488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3500 - 4.3800 0.91 9279 150 0.1691 0.1758 REMARK 3 2 4.3800 - 3.4800 0.93 9492 148 0.1491 0.1586 REMARK 3 3 3.4800 - 3.0400 0.95 9727 133 0.1615 0.1778 REMARK 3 4 3.0400 - 2.7600 0.95 9768 141 0.1674 0.1425 REMARK 3 5 2.7600 - 2.5600 0.86 8776 139 0.1630 0.1741 REMARK 3 6 2.5600 - 2.4100 0.89 9091 137 0.1677 0.1810 REMARK 3 7 2.4100 - 2.2900 0.92 9438 148 0.1681 0.2203 REMARK 3 8 2.2900 - 2.1900 0.93 9491 144 0.1719 0.2049 REMARK 3 9 2.1900 - 2.1100 0.94 9608 144 0.1736 0.2192 REMARK 3 10 2.1100 - 2.0400 0.94 9582 141 0.1763 0.2136 REMARK 3 11 2.0400 - 1.9700 0.94 9618 152 0.1776 0.2137 REMARK 3 12 1.9700 - 1.9200 0.95 9682 140 0.1872 0.1958 REMARK 3 13 1.9200 - 1.8700 0.86 8799 132 0.1931 0.2109 REMARK 3 14 1.8700 - 1.8200 0.87 8871 118 0.1906 0.2001 REMARK 3 15 1.8200 - 1.7800 0.91 9245 141 0.2068 0.2550 REMARK 3 16 1.7800 - 1.7400 0.92 9212 166 0.2110 0.2096 REMARK 3 17 1.7400 - 1.7100 0.92 9490 129 0.2152 0.2579 REMARK 3 18 1.7100 - 1.6700 0.92 9463 152 0.2298 0.2955 REMARK 3 19 1.6700 - 1.6400 0.93 9352 136 0.2438 0.2954 REMARK 3 20 1.6400 - 1.6200 0.93 9454 141 0.2468 0.2540 REMARK 3 21 1.6200 - 1.5900 0.91 9288 148 0.2495 0.2614 REMARK 3 22 1.5900 - 1.5700 0.90 9255 147 0.2563 0.2915 REMARK 3 23 1.5700 - 1.5400 0.88 9017 112 0.2721 0.3078 REMARK 3 24 1.5400 - 1.5200 0.82 8298 142 0.2816 0.2955 REMARK 3 25 1.5200 - 1.5000 0.66 6794 107 0.2857 0.3005 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.183 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.226 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 7362 REMARK 3 ANGLE : 0.821 9963 REMARK 3 CHIRALITY : 0.052 973 REMARK 3 PLANARITY : 0.006 1358 REMARK 3 DIHEDRAL : 16.147 4382 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 31 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.0201 -9.0464 -5.9114 REMARK 3 T TENSOR REMARK 3 T11: 0.1403 T22: 0.1061 REMARK 3 T33: 0.0754 T12: 0.0229 REMARK 3 T13: 0.0246 T23: -0.0420 REMARK 3 L TENSOR REMARK 3 L11: 7.1651 L22: 3.7116 REMARK 3 L33: 2.0693 L12: 1.9942 REMARK 3 L13: 1.3996 L23: 0.6887 REMARK 3 S TENSOR REMARK 3 S11: -0.0731 S12: -0.2644 S13: 0.1970 REMARK 3 S21: -0.0222 S22: -0.0226 S23: -0.0822 REMARK 3 S31: -0.1301 S32: -0.0826 S33: 0.0728 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2456 -16.3736 -12.3651 REMARK 3 T TENSOR REMARK 3 T11: 0.1296 T22: 0.1547 REMARK 3 T33: 0.1273 T12: -0.0149 REMARK 3 T13: 0.0127 T23: -0.0635 REMARK 3 L TENSOR REMARK 3 L11: 3.8902 L22: 3.0237 REMARK 3 L33: 3.9783 L12: 2.0519 REMARK 3 L13: -1.3220 L23: -1.3480 REMARK 3 S TENSOR REMARK 3 S11: -0.0540 S12: 0.2400 S13: -0.1913 REMARK 3 S21: -0.1237 S22: 0.0865 S23: -0.3471 REMARK 3 S31: -0.1136 S32: 0.1685 S33: 0.0036 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3175 -18.9057 -16.4118 REMARK 3 T TENSOR REMARK 3 T11: 0.1257 T22: 0.1384 REMARK 3 T33: 0.0999 T12: -0.0147 REMARK 3 T13: 0.0363 T23: -0.0268 REMARK 3 L TENSOR REMARK 3 L11: 2.7318 L22: 2.7893 REMARK 3 L33: 1.0136 L12: 0.8844 REMARK 3 L13: 1.4097 L23: 1.1697 REMARK 3 S TENSOR REMARK 3 S11: -0.0914 S12: 0.1204 S13: 0.0076 REMARK 3 S21: -0.2873 S22: 0.0984 S23: -0.1610 REMARK 3 S31: -0.0762 S32: -0.0263 S33: -0.0125 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0031 -22.8471 -16.0008 REMARK 3 T TENSOR REMARK 3 T11: 0.1166 T22: 0.1437 REMARK 3 T33: 0.1292 T12: -0.0506 REMARK 3 T13: 0.0074 T23: -0.0437 REMARK 3 L TENSOR REMARK 3 L11: 2.5410 L22: 3.4227 REMARK 3 L33: 4.4997 L12: 0.1365 REMARK 3 L13: 0.5025 L23: 0.1575 REMARK 3 S TENSOR REMARK 3 S11: -0.0020 S12: 0.1352 S13: -0.1411 REMARK 3 S21: -0.1413 S22: 0.0506 S23: -0.0019 REMARK 3 S31: 0.0371 S32: -0.2497 S33: -0.0443 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.0577 -21.4151 -3.8702 REMARK 3 T TENSOR REMARK 3 T11: 0.1512 T22: 0.1224 REMARK 3 T33: 0.3221 T12: 0.0203 REMARK 3 T13: -0.0403 T23: -0.0384 REMARK 3 L TENSOR REMARK 3 L11: 1.4002 L22: 1.7044 REMARK 3 L33: 4.0723 L12: 0.7972 REMARK 3 L13: 0.7918 L23: 0.3650 REMARK 3 S TENSOR REMARK 3 S11: 0.2114 S12: 0.0415 S13: -0.5464 REMARK 3 S21: 0.1169 S22: 0.2236 S23: -0.5572 REMARK 3 S31: 0.3667 S32: 0.0505 S33: -0.3891 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 129 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0055 -11.0964 7.3146 REMARK 3 T TENSOR REMARK 3 T11: 0.1355 T22: 0.2691 REMARK 3 T33: 0.1565 T12: -0.0272 REMARK 3 T13: -0.0006 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.6294 L22: 0.9469 REMARK 3 L33: 2.6803 L12: 0.3617 REMARK 3 L13: 1.2972 L23: 1.3453 REMARK 3 S TENSOR REMARK 3 S11: 0.1133 S12: -0.2806 S13: -0.0159 REMARK 3 S21: 0.1614 S22: -0.1487 S23: 0.0233 REMARK 3 S31: 0.1621 S32: -0.6745 S33: 0.0073 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 187 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4245 -12.4596 2.3243 REMARK 3 T TENSOR REMARK 3 T11: 0.1010 T22: 0.1426 REMARK 3 T33: 0.1402 T12: -0.0443 REMARK 3 T13: 0.0021 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 3.1528 L22: 2.4481 REMARK 3 L33: 3.2917 L12: -0.1778 REMARK 3 L13: 0.8901 L23: 1.5438 REMARK 3 S TENSOR REMARK 3 S11: 0.1144 S12: -0.3090 S13: 0.0398 REMARK 3 S21: 0.1009 S22: -0.1217 S23: -0.1422 REMARK 3 S31: 0.0765 S32: -0.2915 S33: -0.0049 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.6810 7.2494 16.4542 REMARK 3 T TENSOR REMARK 3 T11: 0.0644 T22: 0.1150 REMARK 3 T33: 0.0940 T12: 0.0078 REMARK 3 T13: 0.0122 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 2.4385 L22: 2.8322 REMARK 3 L33: 2.7227 L12: 0.4624 REMARK 3 L13: 0.0391 L23: -0.3404 REMARK 3 S TENSOR REMARK 3 S11: 0.0150 S12: 0.1061 S13: 0.0812 REMARK 3 S21: -0.0548 S22: 0.0111 S23: 0.0448 REMARK 3 S31: -0.2144 S32: -0.0080 S33: -0.0068 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 25 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.0841 2.4017 23.0062 REMARK 3 T TENSOR REMARK 3 T11: 0.0851 T22: 0.0948 REMARK 3 T33: 0.0857 T12: 0.0078 REMARK 3 T13: -0.0067 T23: 0.0179 REMARK 3 L TENSOR REMARK 3 L11: 2.6369 L22: 8.4867 REMARK 3 L33: 3.6371 L12: -0.8506 REMARK 3 L13: -0.8145 L23: 3.7956 REMARK 3 S TENSOR REMARK 3 S11: 0.0671 S12: -0.1364 S13: -0.0260 REMARK 3 S21: -0.0155 S22: -0.0471 S23: 0.0944 REMARK 3 S31: -0.0964 S32: 0.0206 S33: -0.0124 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 43 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.2726 -7.7167 23.5697 REMARK 3 T TENSOR REMARK 3 T11: 0.0932 T22: 0.0936 REMARK 3 T33: 0.1404 T12: 0.0205 REMARK 3 T13: -0.0071 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 2.0911 L22: 2.1828 REMARK 3 L33: 1.0851 L12: 1.2879 REMARK 3 L13: 0.6918 L23: -0.2259 REMARK 3 S TENSOR REMARK 3 S11: 0.0660 S12: -0.0845 S13: -0.2456 REMARK 3 S21: 0.0426 S22: 0.0224 S23: -0.0587 REMARK 3 S31: 0.1376 S32: 0.0440 S33: -0.1000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 81 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.3806 -9.6780 31.5669 REMARK 3 T TENSOR REMARK 3 T11: 0.1354 T22: 0.1294 REMARK 3 T33: 0.1648 T12: 0.0018 REMARK 3 T13: -0.0611 T23: 0.0643 REMARK 3 L TENSOR REMARK 3 L11: 5.2690 L22: 2.0457 REMARK 3 L33: 4.2200 L12: 0.1995 REMARK 3 L13: -2.9059 L23: -0.4012 REMARK 3 S TENSOR REMARK 3 S11: -0.0138 S12: -0.2252 S13: -0.3083 REMARK 3 S21: 0.2312 S22: -0.1584 S23: -0.2616 REMARK 3 S31: 0.2076 S32: 0.1359 S33: 0.1719 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 105 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.8146 5.6092 13.4689 REMARK 3 T TENSOR REMARK 3 T11: 0.0883 T22: 0.1100 REMARK 3 T33: 0.1310 T12: 0.0359 REMARK 3 T13: -0.0061 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 2.3344 L22: 1.6379 REMARK 3 L33: 4.2178 L12: 0.4175 REMARK 3 L13: 0.1555 L23: -1.6984 REMARK 3 S TENSOR REMARK 3 S11: -0.0072 S12: 0.2908 S13: 0.1385 REMARK 3 S21: -0.0775 S22: 0.1898 S23: 0.1062 REMARK 3 S31: -0.0749 S32: -0.2713 S33: -0.1872 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 129 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.9508 0.2506 4.2303 REMARK 3 T TENSOR REMARK 3 T11: 0.1375 T22: 0.1692 REMARK 3 T33: 0.1538 T12: 0.0107 REMARK 3 T13: 0.0052 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 1.8536 L22: 1.2644 REMARK 3 L33: 2.7382 L12: 0.0994 REMARK 3 L13: -1.7131 L23: 1.0677 REMARK 3 S TENSOR REMARK 3 S11: -0.1451 S12: 0.1224 S13: -0.1615 REMARK 3 S21: -0.1568 S22: 0.1376 S23: -0.1633 REMARK 3 S31: -0.0227 S32: 0.0914 S33: -0.0199 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 155 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.2818 7.3591 4.0196 REMARK 3 T TENSOR REMARK 3 T11: 0.0853 T22: 0.2005 REMARK 3 T33: 0.1232 T12: 0.0171 REMARK 3 T13: 0.0169 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 2.5060 L22: 4.8678 REMARK 3 L33: 3.1430 L12: 0.2774 REMARK 3 L13: 0.2757 L23: 0.4173 REMARK 3 S TENSOR REMARK 3 S11: -0.0049 S12: 0.5166 S13: 0.1149 REMARK 3 S21: -0.3080 S22: 0.0104 S23: 0.1413 REMARK 3 S31: -0.1826 S32: 0.0196 S33: -0.0105 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 187 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.8721 0.0043 12.8443 REMARK 3 T TENSOR REMARK 3 T11: 0.1183 T22: 0.1652 REMARK 3 T33: 0.1637 T12: 0.0049 REMARK 3 T13: 0.0068 T23: -0.0304 REMARK 3 L TENSOR REMARK 3 L11: 5.8870 L22: 2.0006 REMARK 3 L33: 7.5853 L12: 0.9919 REMARK 3 L13: -1.7305 L23: -2.1900 REMARK 3 S TENSOR REMARK 3 S11: 0.0934 S12: 0.0805 S13: -0.0664 REMARK 3 S21: 0.1079 S22: -0.0454 S23: -0.0951 REMARK 3 S31: -0.2797 S32: 0.6109 S33: -0.0628 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 198 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.7355 6.3270 2.3941 REMARK 3 T TENSOR REMARK 3 T11: 0.1496 T22: 0.1465 REMARK 3 T33: 0.1221 T12: 0.0150 REMARK 3 T13: 0.0467 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 6.9867 L22: 2.6912 REMARK 3 L33: 3.2460 L12: -1.1119 REMARK 3 L13: 2.7334 L23: -2.7793 REMARK 3 S TENSOR REMARK 3 S11: -0.1751 S12: 0.5213 S13: 0.1859 REMARK 3 S21: -0.1319 S22: 0.0487 S23: -0.0491 REMARK 3 S31: -0.1009 S32: 0.1331 S33: 0.0369 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 208 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.8659 2.0712 11.1241 REMARK 3 T TENSOR REMARK 3 T11: 0.1275 T22: 0.1388 REMARK 3 T33: 0.1546 T12: 0.0134 REMARK 3 T13: -0.0052 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 1.9382 L22: 1.4571 REMARK 3 L33: 8.8934 L12: 0.2703 REMARK 3 L13: -2.2300 L23: 0.5762 REMARK 3 S TENSOR REMARK 3 S11: 0.0663 S12: 0.1833 S13: 0.1247 REMARK 3 S21: -0.0857 S22: 0.0425 S23: -0.0484 REMARK 3 S31: -0.1548 S32: 0.0231 S33: -0.0836 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 2 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.9123 12.0898 -15.2755 REMARK 3 T TENSOR REMARK 3 T11: 0.1263 T22: 0.1356 REMARK 3 T33: 0.0971 T12: -0.0029 REMARK 3 T13: 0.0036 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 2.8673 L22: 2.0111 REMARK 3 L33: 1.7244 L12: 1.5014 REMARK 3 L13: -0.3235 L23: -0.5767 REMARK 3 S TENSOR REMARK 3 S11: -0.0631 S12: 0.1655 S13: -0.0834 REMARK 3 S21: -0.0336 S22: 0.0319 S23: -0.0716 REMARK 3 S31: 0.1046 S32: 0.0311 S33: 0.0429 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 81 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.9984 11.9915 -12.0763 REMARK 3 T TENSOR REMARK 3 T11: 0.1086 T22: 0.2024 REMARK 3 T33: 0.2130 T12: 0.0022 REMARK 3 T13: -0.0224 T23: 0.0301 REMARK 3 L TENSOR REMARK 3 L11: 5.4013 L22: 4.3563 REMARK 3 L33: 6.8538 L12: 0.6604 REMARK 3 L13: -2.5058 L23: -0.5468 REMARK 3 S TENSOR REMARK 3 S11: -0.0716 S12: -0.1571 S13: -0.4159 REMARK 3 S21: 0.1783 S22: -0.0619 S23: -0.3448 REMARK 3 S31: 0.1837 S32: 0.3077 S33: 0.1500 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 105 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6334 15.1464 -23.1310 REMARK 3 T TENSOR REMARK 3 T11: 0.2159 T22: 0.2880 REMARK 3 T33: 0.1451 T12: -0.0281 REMARK 3 T13: -0.0197 T23: 0.0362 REMARK 3 L TENSOR REMARK 3 L11: 5.4298 L22: 1.6069 REMARK 3 L33: 2.1837 L12: -0.3703 REMARK 3 L13: -0.0775 L23: -0.6453 REMARK 3 S TENSOR REMARK 3 S11: -0.2969 S12: 0.5540 S13: 0.3023 REMARK 3 S21: -0.0147 S22: 0.2500 S23: 0.1475 REMARK 3 S31: 0.0271 S32: -0.3342 S33: 0.0088 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 129 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9043 16.5828 -7.3317 REMARK 3 T TENSOR REMARK 3 T11: 0.1750 T22: 0.2053 REMARK 3 T33: 0.1874 T12: -0.0315 REMARK 3 T13: 0.0108 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 1.6690 L22: 1.2720 REMARK 3 L33: 3.4440 L12: -0.0605 REMARK 3 L13: -1.6871 L23: 0.2333 REMARK 3 S TENSOR REMARK 3 S11: 0.1570 S12: 0.0482 S13: 0.1522 REMARK 3 S21: 0.1317 S22: -0.0307 S23: 0.1002 REMARK 3 S31: -0.0998 S32: -0.3361 S33: -0.1192 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 145 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7157 11.9681 -0.4345 REMARK 3 T TENSOR REMARK 3 T11: 0.2354 T22: 0.3295 REMARK 3 T33: 0.2092 T12: -0.0588 REMARK 3 T13: 0.0567 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 1.8840 L22: 1.3098 REMARK 3 L33: 1.0275 L12: -0.2161 REMARK 3 L13: 0.7584 L23: 0.8539 REMARK 3 S TENSOR REMARK 3 S11: 0.1673 S12: 0.1124 S13: 0.1781 REMARK 3 S21: 0.1267 S22: -0.1784 S23: 0.1489 REMARK 3 S31: -0.0057 S32: -0.4217 S33: 0.0219 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 155 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4199 13.6895 -10.6779 REMARK 3 T TENSOR REMARK 3 T11: 0.1606 T22: 0.2619 REMARK 3 T33: 0.1641 T12: -0.0122 REMARK 3 T13: 0.0458 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 4.4617 L22: 3.4099 REMARK 3 L33: 2.6389 L12: 0.3065 REMARK 3 L13: -0.0375 L23: 0.4926 REMARK 3 S TENSOR REMARK 3 S11: -0.0229 S12: 0.0609 S13: 0.0712 REMARK 3 S21: 0.1772 S22: -0.0177 S23: 0.4838 REMARK 3 S31: -0.0149 S32: -0.5141 S33: 0.0301 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 187 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.2457 7.3632 -1.5702 REMARK 3 T TENSOR REMARK 3 T11: 0.2519 T22: 0.2702 REMARK 3 T33: 0.1961 T12: -0.0716 REMARK 3 T13: 0.0316 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 4.7164 L22: 4.5537 REMARK 3 L33: 2.0364 L12: 1.2767 REMARK 3 L13: -0.9442 L23: -0.0434 REMARK 3 S TENSOR REMARK 3 S11: 0.0015 S12: -0.1993 S13: -0.4944 REMARK 3 S21: 0.0452 S22: 0.0149 S23: 0.3048 REMARK 3 S31: 0.2602 S32: -0.5764 S33: 0.0362 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 198 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7633 13.7106 -9.9233 REMARK 3 T TENSOR REMARK 3 T11: 0.1770 T22: 0.3094 REMARK 3 T33: 0.1866 T12: -0.0515 REMARK 3 T13: 0.0348 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 5.2503 L22: 2.4516 REMARK 3 L33: 3.1651 L12: -0.8260 REMARK 3 L13: 1.1535 L23: -1.7922 REMARK 3 S TENSOR REMARK 3 S11: 0.0652 S12: 0.0494 S13: -0.2079 REMARK 3 S21: -0.1768 S22: 0.1360 S23: 0.4473 REMARK 3 S31: 0.1447 S32: -0.5423 S33: -0.1355 REMARK 3 TLS GROUP : 26 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 208 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.4977 17.3938 -18.2392 REMARK 3 T TENSOR REMARK 3 T11: 0.1970 T22: 0.2051 REMARK 3 T33: 0.1759 T12: -0.0061 REMARK 3 T13: -0.0334 T23: 0.0553 REMARK 3 L TENSOR REMARK 3 L11: 5.4734 L22: 3.1775 REMARK 3 L33: 6.5697 L12: -1.2253 REMARK 3 L13: -3.4729 L23: 0.9994 REMARK 3 S TENSOR REMARK 3 S11: 0.0936 S12: 0.0865 S13: 0.1995 REMARK 3 S21: -0.1271 S22: 0.0273 S23: 0.0856 REMARK 3 S31: 0.1290 S32: -0.2375 S33: -0.0786 REMARK 3 TLS GROUP : 27 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2265 11.6012 24.4266 REMARK 3 T TENSOR REMARK 3 T11: 0.0938 T22: 0.0619 REMARK 3 T33: 0.0889 T12: 0.0202 REMARK 3 T13: 0.0004 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 2.7144 L22: 2.3604 REMARK 3 L33: 3.2398 L12: -0.2490 REMARK 3 L13: 0.4383 L23: -1.2734 REMARK 3 S TENSOR REMARK 3 S11: 0.0452 S12: -0.0769 S13: -0.0541 REMARK 3 S21: -0.0659 S22: -0.0449 S23: 0.0717 REMARK 3 S31: 0.1917 S32: 0.0100 S33: -0.0167 REMARK 3 TLS GROUP : 28 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 25 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6873 26.4161 27.7760 REMARK 3 T TENSOR REMARK 3 T11: 0.1192 T22: 0.0872 REMARK 3 T33: 0.1381 T12: 0.0243 REMARK 3 T13: -0.0069 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 1.3889 L22: 2.4110 REMARK 3 L33: 1.1021 L12: 0.7834 REMARK 3 L13: 0.1875 L23: -0.4754 REMARK 3 S TENSOR REMARK 3 S11: -0.0208 S12: 0.0195 S13: 0.1403 REMARK 3 S21: 0.0149 S22: -0.0609 S23: -0.0012 REMARK 3 S31: -0.0424 S32: -0.0118 S33: 0.0841 REMARK 3 TLS GROUP : 29 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 81 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6441 33.1076 23.0917 REMARK 3 T TENSOR REMARK 3 T11: 0.1140 T22: 0.0977 REMARK 3 T33: 0.2222 T12: 0.0323 REMARK 3 T13: -0.0091 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 1.8138 L22: 4.6657 REMARK 3 L33: 7.1317 L12: -1.1808 REMARK 3 L13: -1.3960 L23: 2.3656 REMARK 3 S TENSOR REMARK 3 S11: 0.0821 S12: 0.0261 S13: 0.1777 REMARK 3 S21: -0.0964 S22: -0.0282 S23: 0.2458 REMARK 3 S31: -0.2074 S32: -0.1653 S33: -0.0830 REMARK 3 TLS GROUP : 30 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 105 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6089 16.0045 34.9149 REMARK 3 T TENSOR REMARK 3 T11: 0.1792 T22: 0.1337 REMARK 3 T33: 0.0626 T12: 0.0061 REMARK 3 T13: -0.0066 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 4.6860 L22: 3.2652 REMARK 3 L33: 0.7213 L12: -1.9609 REMARK 3 L13: 0.0923 L23: 0.5300 REMARK 3 S TENSOR REMARK 3 S11: -0.1198 S12: -0.1791 S13: 0.0041 REMARK 3 S21: 0.3429 S22: 0.1256 S23: -0.1548 REMARK 3 S31: 0.0708 S32: 0.0962 S33: 0.0029 REMARK 3 TLS GROUP : 31 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 129 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8725 9.4370 20.8581 REMARK 3 T TENSOR REMARK 3 T11: 0.0855 T22: 0.0826 REMARK 3 T33: 0.1112 T12: 0.0139 REMARK 3 T13: -0.0020 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.9779 L22: 1.4796 REMARK 3 L33: 1.2154 L12: -0.2649 REMARK 3 L13: -0.1593 L23: 0.2893 REMARK 3 S TENSOR REMARK 3 S11: -0.0002 S12: 0.0775 S13: 0.0039 REMARK 3 S21: 0.0058 S22: 0.0012 S23: -0.0644 REMARK 3 S31: 0.0420 S32: 0.0255 S33: -0.0080 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QKD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-APR-22. REMARK 100 THE DEPOSITION ID IS D_1292118550. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-AUG-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 118682 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 44.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.930 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.13-2998_9999 REMARK 200 STARTING MODEL: 3OF9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MATURE CATHEPSIN L AT A CONCENTRATION REMARK 280 OF 7 MG/ML WAS EQUILIBRATED AGAINST 27% W/V PEG 8000, 1 MM TCEP REMARK 280 AND 0.1 M SODIUM ACETATE AT PH 4.0. CRYSTALS, WHICH GREW AT 293 REMARK 280 K TO FINAL SIZE AFTER APPROXIMATELY 3 DAYS, WERE TRANSFERRED TO REMARK 280 A COMPOUND SOAKING SOLUTION CONTAINING 22% W/V PEG 8000, 1 MM REMARK 280 TCEP AND 0.1 M SODIUM ACETATE AT PH 4.0 AS WELL AS 5% V/V DMSO REMARK 280 AND 10% V/V PEG 400., VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR C 175 REMARK 465 GLU C 176 REMARK 465 SER C 177 REMARK 465 ASP C 178 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 21 58.11 -100.09 REMARK 500 PRO A 116 150.50 -48.63 REMARK 500 ARG A 205 68.77 -117.76 REMARK 500 CYS A 209 19.42 59.27 REMARK 500 GLN B 21 59.09 -98.13 REMARK 500 ALA B 214 54.32 -150.98 REMARK 500 GLN C 21 32.38 -93.03 REMARK 500 LYS C 147 -44.10 -133.09 REMARK 500 LYS C 147 -46.44 -133.09 REMARK 500 ARG C 205 68.76 -119.32 REMARK 500 ALA C 214 57.55 -155.90 REMARK 500 GLN D 21 43.29 -98.84 REMARK 500 ASP D 160 75.40 -112.74 REMARK 500 SER D 174 -163.37 64.42 REMARK 500 ARG D 205 52.83 -119.87 REMARK 500 ALA D 214 56.61 -150.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 685 DISTANCE = 6.84 ANGSTROMS REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: N-[(BENZYLOXY)CARBONYL]-L-LEUCYL-N-[(2S)-1-HYDROXY- REMARK 630 4-METHYLPENTAN-2-YL]-L-LEUCINAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 ALD A 301 REMARK 630 ALD B 301 REMARK 630 ALD C 301 REMARK 630 ALD D 301 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: PHQ LEU LEU DCL REMARK 630 DETAILS: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7QKB RELATED DB: PDB REMARK 900 RELATED ID: 7QKC RELATED DB: PDB DBREF 7QKD A 1 220 UNP P07711 CATL1_HUMAN 114 333 DBREF 7QKD B 1 220 UNP P07711 CATL1_HUMAN 114 333 DBREF 7QKD C 1 220 UNP P07711 CATL1_HUMAN 114 333 DBREF 7QKD D 1 220 UNP P07711 CATL1_HUMAN 114 333 SEQADV 7QKD ALA A 110 UNP P07711 THR 223 ENGINEERED MUTATION SEQADV 7QKD ALA B 110 UNP P07711 THR 223 ENGINEERED MUTATION SEQADV 7QKD ALA C 110 UNP P07711 THR 223 ENGINEERED MUTATION SEQADV 7QKD ALA D 110 UNP P07711 THR 223 ENGINEERED MUTATION SEQRES 1 A 220 ALA PRO ARG SER VAL ASP TRP ARG GLU LYS GLY TYR VAL SEQRES 2 A 220 THR PRO VAL LYS ASN GLN GLY GLN CYS GLY SER CYS TRP SEQRES 3 A 220 ALA PHE SER ALA THR GLY ALA LEU GLU GLY GLN MET PHE SEQRES 4 A 220 ARG LYS THR GLY ARG LEU ILE SER LEU SER GLU GLN ASN SEQRES 5 A 220 LEU VAL ASP CYS SER GLY PRO GLN GLY ASN GLU GLY CYS SEQRES 6 A 220 ASN GLY GLY LEU MET ASP TYR ALA PHE GLN TYR VAL GLN SEQRES 7 A 220 ASP ASN GLY GLY LEU ASP SER GLU GLU SER TYR PRO TYR SEQRES 8 A 220 GLU ALA THR GLU GLU SER CYS LYS TYR ASN PRO LYS TYR SEQRES 9 A 220 SER VAL ALA ASN ASP ALA GLY PHE VAL ASP ILE PRO LYS SEQRES 10 A 220 GLN GLU LYS ALA LEU MET LYS ALA VAL ALA THR VAL GLY SEQRES 11 A 220 PRO ILE SER VAL ALA ILE ASP ALA GLY HIS GLU SER PHE SEQRES 12 A 220 LEU PHE TYR LYS GLU GLY ILE TYR PHE GLU PRO ASP CYS SEQRES 13 A 220 SER SER GLU ASP MET ASP HIS GLY VAL LEU VAL VAL GLY SEQRES 14 A 220 TYR GLY PHE GLU SER THR GLU SER ASP ASN ASN LYS TYR SEQRES 15 A 220 TRP LEU VAL LYS ASN SER TRP GLY GLU GLU TRP GLY MET SEQRES 16 A 220 GLY GLY TYR VAL LYS MET ALA LYS ASP ARG ARG ASN HIS SEQRES 17 A 220 CYS GLY ILE ALA SER ALA ALA SER TYR PRO THR VAL SEQRES 1 B 220 ALA PRO ARG SER VAL ASP TRP ARG GLU LYS GLY TYR VAL SEQRES 2 B 220 THR PRO VAL LYS ASN GLN GLY GLN CYS GLY SER CYS TRP SEQRES 3 B 220 ALA PHE SER ALA THR GLY ALA LEU GLU GLY GLN MET PHE SEQRES 4 B 220 ARG LYS THR GLY ARG LEU ILE SER LEU SER GLU GLN ASN SEQRES 5 B 220 LEU VAL ASP CYS SER GLY PRO GLN GLY ASN GLU GLY CYS SEQRES 6 B 220 ASN GLY GLY LEU MET ASP TYR ALA PHE GLN TYR VAL GLN SEQRES 7 B 220 ASP ASN GLY GLY LEU ASP SER GLU GLU SER TYR PRO TYR SEQRES 8 B 220 GLU ALA THR GLU GLU SER CYS LYS TYR ASN PRO LYS TYR SEQRES 9 B 220 SER VAL ALA ASN ASP ALA GLY PHE VAL ASP ILE PRO LYS SEQRES 10 B 220 GLN GLU LYS ALA LEU MET LYS ALA VAL ALA THR VAL GLY SEQRES 11 B 220 PRO ILE SER VAL ALA ILE ASP ALA GLY HIS GLU SER PHE SEQRES 12 B 220 LEU PHE TYR LYS GLU GLY ILE TYR PHE GLU PRO ASP CYS SEQRES 13 B 220 SER SER GLU ASP MET ASP HIS GLY VAL LEU VAL VAL GLY SEQRES 14 B 220 TYR GLY PHE GLU SER THR GLU SER ASP ASN ASN LYS TYR SEQRES 15 B 220 TRP LEU VAL LYS ASN SER TRP GLY GLU GLU TRP GLY MET SEQRES 16 B 220 GLY GLY TYR VAL LYS MET ALA LYS ASP ARG ARG ASN HIS SEQRES 17 B 220 CYS GLY ILE ALA SER ALA ALA SER TYR PRO THR VAL SEQRES 1 C 220 ALA PRO ARG SER VAL ASP TRP ARG GLU LYS GLY TYR VAL SEQRES 2 C 220 THR PRO VAL LYS ASN GLN GLY GLN CYS GLY SER CYS TRP SEQRES 3 C 220 ALA PHE SER ALA THR GLY ALA LEU GLU GLY GLN MET PHE SEQRES 4 C 220 ARG LYS THR GLY ARG LEU ILE SER LEU SER GLU GLN ASN SEQRES 5 C 220 LEU VAL ASP CYS SER GLY PRO GLN GLY ASN GLU GLY CYS SEQRES 6 C 220 ASN GLY GLY LEU MET ASP TYR ALA PHE GLN TYR VAL GLN SEQRES 7 C 220 ASP ASN GLY GLY LEU ASP SER GLU GLU SER TYR PRO TYR SEQRES 8 C 220 GLU ALA THR GLU GLU SER CYS LYS TYR ASN PRO LYS TYR SEQRES 9 C 220 SER VAL ALA ASN ASP ALA GLY PHE VAL ASP ILE PRO LYS SEQRES 10 C 220 GLN GLU LYS ALA LEU MET LYS ALA VAL ALA THR VAL GLY SEQRES 11 C 220 PRO ILE SER VAL ALA ILE ASP ALA GLY HIS GLU SER PHE SEQRES 12 C 220 LEU PHE TYR LYS GLU GLY ILE TYR PHE GLU PRO ASP CYS SEQRES 13 C 220 SER SER GLU ASP MET ASP HIS GLY VAL LEU VAL VAL GLY SEQRES 14 C 220 TYR GLY PHE GLU SER THR GLU SER ASP ASN ASN LYS TYR SEQRES 15 C 220 TRP LEU VAL LYS ASN SER TRP GLY GLU GLU TRP GLY MET SEQRES 16 C 220 GLY GLY TYR VAL LYS MET ALA LYS ASP ARG ARG ASN HIS SEQRES 17 C 220 CYS GLY ILE ALA SER ALA ALA SER TYR PRO THR VAL SEQRES 1 D 220 ALA PRO ARG SER VAL ASP TRP ARG GLU LYS GLY TYR VAL SEQRES 2 D 220 THR PRO VAL LYS ASN GLN GLY GLN CYS GLY SER CYS TRP SEQRES 3 D 220 ALA PHE SER ALA THR GLY ALA LEU GLU GLY GLN MET PHE SEQRES 4 D 220 ARG LYS THR GLY ARG LEU ILE SER LEU SER GLU GLN ASN SEQRES 5 D 220 LEU VAL ASP CYS SER GLY PRO GLN GLY ASN GLU GLY CYS SEQRES 6 D 220 ASN GLY GLY LEU MET ASP TYR ALA PHE GLN TYR VAL GLN SEQRES 7 D 220 ASP ASN GLY GLY LEU ASP SER GLU GLU SER TYR PRO TYR SEQRES 8 D 220 GLU ALA THR GLU GLU SER CYS LYS TYR ASN PRO LYS TYR SEQRES 9 D 220 SER VAL ALA ASN ASP ALA GLY PHE VAL ASP ILE PRO LYS SEQRES 10 D 220 GLN GLU LYS ALA LEU MET LYS ALA VAL ALA THR VAL GLY SEQRES 11 D 220 PRO ILE SER VAL ALA ILE ASP ALA GLY HIS GLU SER PHE SEQRES 12 D 220 LEU PHE TYR LYS GLU GLY ILE TYR PHE GLU PRO ASP CYS SEQRES 13 D 220 SER SER GLU ASP MET ASP HIS GLY VAL LEU VAL VAL GLY SEQRES 14 D 220 TYR GLY PHE GLU SER THR GLU SER ASP ASN ASN LYS TYR SEQRES 15 D 220 TRP LEU VAL LYS ASN SER TRP GLY GLU GLU TRP GLY MET SEQRES 16 D 220 GLY GLY TYR VAL LYS MET ALA LYS ASP ARG ARG ASN HIS SEQRES 17 D 220 CYS GLY ILE ALA SER ALA ALA SER TYR PRO THR VAL HET ALD A 301 76 HET PEG A 302 17 HET PEG A 303 17 HET ALD B 301 76 HET PEG B 302 17 HET ALD C 301 76 HET PEG C 302 17 HET ALD D 301 76 HET PEG D 302 17 HET PEG D 303 17 HET PEG D 304 17 HET ACT D 305 7 HETNAM ALD N-[(BENZYLOXY)CARBONYL]-L-LEUCYL-N-[(2S)-1-HYDROXY-4- HETNAM 2 ALD METHYLPENTAN-2-YL]-L-LEUCINAMIDE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM ACT ACETATE ION FORMUL 5 ALD 4(C26 H43 N3 O5) FORMUL 6 PEG 7(C4 H10 O3) FORMUL 16 ACT C2 H3 O2 1- FORMUL 17 HOH *932(H2 O) HELIX 1 AA1 ARG A 8 GLY A 11 5 4 HELIX 2 AA2 SER A 24 GLY A 43 1 20 HELIX 3 AA3 SER A 49 SER A 57 1 9 HELIX 4 AA4 GLY A 58 GLY A 61 5 4 HELIX 5 AA5 GLU A 63 GLY A 67 5 5 HELIX 6 AA6 LEU A 69 GLY A 81 1 13 HELIX 7 AA7 ASN A 101 LYS A 103 5 3 HELIX 8 AA8 GLN A 118 VAL A 129 1 12 HELIX 9 AA9 HIS A 140 PHE A 145 1 6 HELIX 10 AB1 ASN A 207 ILE A 211 5 5 HELIX 11 AB2 ARG B 8 GLY B 11 5 4 HELIX 12 AB3 SER B 24 GLY B 43 1 20 HELIX 13 AB4 SER B 49 SER B 57 1 9 HELIX 14 AB5 GLY B 58 GLY B 61 5 4 HELIX 15 AB6 GLU B 63 GLY B 67 5 5 HELIX 16 AB7 LEU B 69 GLY B 81 1 13 HELIX 17 AB8 ASN B 101 LYS B 103 5 3 HELIX 18 AB9 GLN B 118 VAL B 129 1 12 HELIX 19 AC1 HIS B 140 PHE B 145 1 6 HELIX 20 AC2 ASN B 207 ILE B 211 5 5 HELIX 21 AC3 ARG C 8 GLY C 11 5 4 HELIX 22 AC4 SER C 24 GLY C 43 1 20 HELIX 23 AC5 SER C 49 SER C 57 1 9 HELIX 24 AC6 GLY C 58 GLY C 61 5 4 HELIX 25 AC7 GLU C 63 GLY C 67 5 5 HELIX 26 AC8 LEU C 69 GLY C 81 1 13 HELIX 27 AC9 ASN C 101 LYS C 103 5 3 HELIX 28 AD1 GLN C 118 VAL C 129 1 12 HELIX 29 AD2 HIS C 140 PHE C 145 1 6 HELIX 30 AD3 ASN C 207 ILE C 211 5 5 HELIX 31 AD4 ARG D 8 GLY D 11 5 4 HELIX 32 AD5 SER D 24 GLY D 43 1 20 HELIX 33 AD6 SER D 49 SER D 57 1 9 HELIX 34 AD7 GLY D 58 GLY D 61 5 4 HELIX 35 AD8 GLU D 63 GLY D 67 5 5 HELIX 36 AD9 LEU D 69 GLY D 81 1 13 HELIX 37 AE1 ASN D 101 LYS D 103 5 3 HELIX 38 AE2 GLN D 118 VAL D 129 1 12 HELIX 39 AE3 HIS D 140 PHE D 145 1 6 HELIX 40 AE4 THR D 175 ASN D 179 5 5 HELIX 41 AE5 ASN D 207 ILE D 211 5 5 SHEET 1 AA1 3 VAL A 5 ASP A 6 0 SHEET 2 AA1 3 HIS A 163 PHE A 172 -1 O TYR A 170 N VAL A 5 SHEET 3 AA1 3 ILE A 132 ILE A 136 -1 N ILE A 136 O HIS A 163 SHEET 1 AA2 5 VAL A 5 ASP A 6 0 SHEET 2 AA2 5 HIS A 163 PHE A 172 -1 O TYR A 170 N VAL A 5 SHEET 3 AA2 5 LYS A 181 LYS A 186 -1 O LYS A 186 N LEU A 166 SHEET 4 AA2 5 TYR A 198 ALA A 202 -1 O MET A 201 N TRP A 183 SHEET 5 AA2 5 ILE A 150 TYR A 151 1 N TYR A 151 O LYS A 200 SHEET 1 AA3 2 LEU A 83 ASP A 84 0 SHEET 2 AA3 2 SER A 105 ALA A 107 -1 O VAL A 106 N LEU A 83 SHEET 1 AA4 2 PHE A 112 ASP A 114 0 SHEET 2 AA4 2 SER A 216 PRO A 218 -1 O TYR A 217 N VAL A 113 SHEET 1 AA5 3 VAL B 5 ASP B 6 0 SHEET 2 AA5 3 HIS B 163 GLY B 171 -1 O TYR B 170 N VAL B 5 SHEET 3 AA5 3 ILE B 132 ILE B 136 -1 N ILE B 132 O VAL B 167 SHEET 1 AA6 5 VAL B 5 ASP B 6 0 SHEET 2 AA6 5 HIS B 163 GLY B 171 -1 O TYR B 170 N VAL B 5 SHEET 3 AA6 5 TYR B 182 LYS B 186 -1 O LYS B 186 N LEU B 166 SHEET 4 AA6 5 TYR B 198 ALA B 202 -1 O MET B 201 N TRP B 183 SHEET 5 AA6 5 ILE B 150 TYR B 151 1 N TYR B 151 O LYS B 200 SHEET 1 AA7 2 LEU B 83 ASP B 84 0 SHEET 2 AA7 2 SER B 105 ALA B 107 -1 O VAL B 106 N LEU B 83 SHEET 1 AA8 2 PHE B 112 ASP B 114 0 SHEET 2 AA8 2 SER B 216 PRO B 218 -1 O TYR B 217 N VAL B 113 SHEET 1 AA9 3 VAL C 5 ASP C 6 0 SHEET 2 AA9 3 HIS C 163 GLY C 171 -1 O TYR C 170 N VAL C 5 SHEET 3 AA9 3 ILE C 132 ILE C 136 -1 N ILE C 136 O HIS C 163 SHEET 1 AB1 5 VAL C 5 ASP C 6 0 SHEET 2 AB1 5 HIS C 163 GLY C 171 -1 O TYR C 170 N VAL C 5 SHEET 3 AB1 5 LYS C 181 LYS C 186 -1 O LYS C 186 N LEU C 166 SHEET 4 AB1 5 TYR C 198 LYS C 203 -1 O MET C 201 N TRP C 183 SHEET 5 AB1 5 ILE C 150 TYR C 151 1 N TYR C 151 O LYS C 200 SHEET 1 AB2 2 LEU C 83 ASP C 84 0 SHEET 2 AB2 2 SER C 105 ALA C 107 -1 O VAL C 106 N LEU C 83 SHEET 1 AB3 2 PHE C 112 ASP C 114 0 SHEET 2 AB3 2 SER C 216 PRO C 218 -1 O TYR C 217 N VAL C 113 SHEET 1 AB4 3 VAL D 5 ASP D 6 0 SHEET 2 AB4 3 HIS D 163 PHE D 172 -1 O TYR D 170 N VAL D 5 SHEET 3 AB4 3 ILE D 132 ILE D 136 -1 N ILE D 132 O VAL D 167 SHEET 1 AB5 5 VAL D 5 ASP D 6 0 SHEET 2 AB5 5 HIS D 163 PHE D 172 -1 O TYR D 170 N VAL D 5 SHEET 3 AB5 5 LYS D 181 LYS D 186 -1 O LYS D 186 N LEU D 166 SHEET 4 AB5 5 TYR D 198 ALA D 202 -1 O MET D 201 N TRP D 183 SHEET 5 AB5 5 ILE D 150 TYR D 151 1 N TYR D 151 O LYS D 200 SHEET 1 AB6 2 LEU D 83 ASP D 84 0 SHEET 2 AB6 2 SER D 105 ALA D 107 -1 O VAL D 106 N LEU D 83 SHEET 1 AB7 2 PHE D 112 ASP D 114 0 SHEET 2 AB7 2 SER D 216 PRO D 218 -1 O TYR D 217 N VAL D 113 SSBOND 1 CYS A 22 CYS A 65 1555 1555 2.04 SSBOND 2 CYS A 56 CYS A 98 1555 1555 2.04 SSBOND 3 CYS A 156 CYS A 209 1555 1555 2.03 SSBOND 4 CYS B 22 CYS B 65 1555 1555 2.03 SSBOND 5 CYS B 56 CYS B 98 1555 1555 2.04 SSBOND 6 CYS B 156 CYS B 209 1555 1555 2.04 SSBOND 7 CYS C 22 CYS C 65 1555 1555 2.05 SSBOND 8 CYS C 56 CYS C 98 1555 1555 2.03 SSBOND 9 CYS C 156 CYS C 209 1555 1555 2.04 SSBOND 10 CYS D 22 CYS D 65 1555 1555 2.05 SSBOND 11 CYS D 56 CYS D 98 1555 1555 2.04 SSBOND 12 CYS D 156 CYS D 209 1555 1555 2.02 LINK SG CYS A 25 C22 ALD A 301 1555 1555 1.76 LINK SG CYS B 25 C22 ALD B 301 1555 1555 1.92 LINK SG CYS C 25 C22 ALD C 301 1555 1555 1.89 LINK SG CYS D 25 C22 ALD D 301 1555 1555 1.82 CRYST1 57.280 62.710 68.070 105.54 93.39 115.36 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017458 0.008275 0.003936 0.00000 SCALE2 0.000000 0.017647 0.006064 0.00000 SCALE3 0.000000 0.000000 0.015561 0.00000