HEADER TRANSFERASE 20-DEC-21 7QLB TITLE SMYD3 IN COMPLEX WITH FRAGMENT FL06268 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SMYD3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SET AND MYND DOMAIN-CONTAINING PROTEIN 3,ZINC FINGER MYND COMPND 5 DOMAIN-CONTAINING PROTEIN 1; COMPND 6 EC: 2.1.1.354; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMYD3, ZMYND1, ZNFN3A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS METHYLTRANSFERASE, EPIGENETIC, ONCOGEN, HISTONE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.A.LUND,D.CEDERFELT,D.DOBRITZSCH REVDAT 3 24-APR-24 7QLB 1 JRNL REVDAT 2 07-FEB-24 7QLB 1 REMARK REVDAT 1 29-MAR-23 7QLB 0 JRNL AUTH E.A.FITZGERALD,D.CEDERFELT,B.A.LUND,N.MYERS,H.ZHANG, JRNL AUTH 2 D.DOBRITZSCH,H.DANIELSON JRNL TITL IDENTIFICATION OF FRAGMENTS TARGETING SMYD3 USING HIGHLY JRNL TITL 2 SENSITIVE KINETIC AND MULTIPLEXED BIOSENSOR-BASED SCREENING JRNL REF RSC MED CHEM 2024 JRNL REFN ESSN 2632-8682 JRNL DOI 10.1039/D4MD00093E REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20RC4_4425 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 41027 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.740 REMARK 3 FREE R VALUE TEST SET COUNT : 1945 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.3300 - 4.3300 1.00 3008 144 0.1604 0.1797 REMARK 3 2 4.3300 - 3.4400 1.00 2895 121 0.1349 0.1521 REMARK 3 3 3.4400 - 3.0100 1.00 2809 166 0.1487 0.1661 REMARK 3 4 3.0100 - 2.7300 1.00 2832 153 0.1542 0.2053 REMARK 3 5 2.7300 - 2.5400 1.00 2798 143 0.1502 0.1764 REMARK 3 6 2.5400 - 2.3900 1.00 2799 129 0.1437 0.1987 REMARK 3 7 2.3900 - 2.2700 1.00 2796 144 0.1414 0.1878 REMARK 3 8 2.2700 - 2.1700 1.00 2770 155 0.1439 0.1760 REMARK 3 9 2.1700 - 2.0900 1.00 2791 132 0.1469 0.1772 REMARK 3 10 2.0900 - 2.0100 1.00 2774 146 0.1491 0.2216 REMARK 3 11 2.0100 - 1.9500 1.00 2753 143 0.1529 0.2048 REMARK 3 12 1.9500 - 1.8900 1.00 2787 126 0.1603 0.2330 REMARK 3 13 1.8900 - 1.8500 0.98 2749 123 0.1796 0.2277 REMARK 3 14 1.8500 - 1.8000 0.91 2521 120 0.1948 0.2501 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.165 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.506 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3564 REMARK 3 ANGLE : 0.963 4816 REMARK 3 CHIRALITY : 0.057 531 REMARK 3 PLANARITY : 0.008 631 REMARK 3 DIHEDRAL : 20.471 492 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|3 - 72} REMARK 3 ORIGIN FOR THE GROUP (A): 10.0980 2.0006 8.5411 REMARK 3 T TENSOR REMARK 3 T11: 0.1445 T22: 0.1611 REMARK 3 T33: 0.2035 T12: 0.0035 REMARK 3 T13: -0.0467 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.8513 L22: 0.8810 REMARK 3 L33: 4.6906 L12: -0.0223 REMARK 3 L13: -0.6782 L23: 0.0732 REMARK 3 S TENSOR REMARK 3 S11: -0.0442 S12: 0.0490 S13: -0.0571 REMARK 3 S21: -0.1144 S22: 0.0494 S23: 0.0691 REMARK 3 S31: 0.3109 S32: -0.0025 S33: 0.0246 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|73 - 114} REMARK 3 ORIGIN FOR THE GROUP (A): 13.0849 9.8045 -5.6098 REMARK 3 T TENSOR REMARK 3 T11: 0.2085 T22: 0.2157 REMARK 3 T33: 0.1528 T12: -0.0408 REMARK 3 T13: 0.0277 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.5727 L22: 4.5048 REMARK 3 L33: 3.1784 L12: -0.6801 REMARK 3 L13: 1.6588 L23: 1.6346 REMARK 3 S TENSOR REMARK 3 S11: -0.0931 S12: 0.2914 S13: 0.0674 REMARK 3 S21: -0.4487 S22: 0.1137 S23: -0.1268 REMARK 3 S31: -0.1745 S32: 0.2180 S33: 0.0223 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|115 - 170} REMARK 3 ORIGIN FOR THE GROUP (A): 14.0426 20.2913 5.9431 REMARK 3 T TENSOR REMARK 3 T11: 0.1284 T22: 0.0961 REMARK 3 T33: 0.1551 T12: 0.0300 REMARK 3 T13: -0.0213 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 2.5945 L22: 1.6911 REMARK 3 L33: 3.0484 L12: 0.6633 REMARK 3 L13: -0.2742 L23: -0.0141 REMARK 3 S TENSOR REMARK 3 S11: -0.0633 S12: 0.1477 S13: 0.0751 REMARK 3 S21: -0.1482 S22: 0.0720 S23: 0.0648 REMARK 3 S31: -0.1827 S32: -0.1253 S33: 0.0050 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|171 - 428} REMARK 3 ORIGIN FOR THE GROUP (A): 22.0986 -6.7528 18.4431 REMARK 3 T TENSOR REMARK 3 T11: 0.1470 T22: 0.1186 REMARK 3 T33: 0.1207 T12: -0.0016 REMARK 3 T13: -0.0114 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.7137 L22: 1.0737 REMARK 3 L33: 0.6439 L12: -0.5110 REMARK 3 L13: 0.3313 L23: -0.2662 REMARK 3 S TENSOR REMARK 3 S11: 0.0894 S12: 0.0203 S13: -0.1219 REMARK 3 S21: -0.0687 S22: -0.0253 S23: 0.0676 REMARK 3 S31: 0.1708 S32: 0.0212 S33: -0.0453 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QLB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1292119929. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.25-8.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97628 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82041 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.01908 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.14440 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.870 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 6Z2R REMARK 200 REMARK 200 REMARK: NEEDLES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.25-8.75 0.1M MAGNESIUM REMARK 280 ACETATE 15-18 % PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.46900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.08250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.16450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.08250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.46900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.16450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 621 O HOH A 1015 2.01 REMARK 500 O LYS A 56 O HOH A 601 2.04 REMARK 500 O HOH A 927 O HOH A 984 2.04 REMARK 500 OE2 GLU A 173 O HOH A 602 2.09 REMARK 500 O HOH A 681 O HOH A 1015 2.12 REMARK 500 OE2 GLU A 419 O HOH A 603 2.13 REMARK 500 O HOH A 1058 O HOH A 1091 2.15 REMARK 500 NZ LYS A 94 O HOH A 604 2.15 REMARK 500 O HOH A 723 O HOH A 1006 2.15 REMARK 500 O HOH A 1067 O HOH A 1102 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 807 O HOH A 1015 1565 2.05 REMARK 500 O HOH A 947 O HOH A 1060 3645 2.09 REMARK 500 O HOH A 1015 O HOH A 1046 1545 2.10 REMARK 500 O HOH A 878 O HOH A 1015 1565 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 3 CA - N - CD ANGL. DEV. = -8.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 19.40 -146.40 REMARK 500 CYS A 93 36.20 -99.33 REMARK 500 TYR A 124 134.51 -172.78 REMARK 500 LYS A 271 -4.03 78.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1110 DISTANCE = 6.04 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 49 SG REMARK 620 2 CYS A 52 SG 108.0 REMARK 620 3 CYS A 71 SG 113.0 108.1 REMARK 620 4 CYS A 75 SG 107.9 117.0 103.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 62 SG REMARK 620 2 CYS A 65 SG 109.2 REMARK 620 3 HIS A 83 NE2 114.0 105.0 REMARK 620 4 CYS A 87 SG 110.2 111.9 106.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 208 SG REMARK 620 2 CYS A 261 SG 114.7 REMARK 620 3 CYS A 263 SG 108.2 107.3 REMARK 620 4 CYS A 266 SG 100.9 113.7 112.0 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7QA6 RELATED DB: PDB REMARK 900 SMYD3 IN COMPLEX WITH FRAGMENT FL01507 DBREF 7QLB A 1 428 UNP Q9H7B4 SMYD3_HUMAN 1 428 SEQADV 7QLB GLY A -2 UNP Q9H7B4 EXPRESSION TAG SEQADV 7QLB SER A -1 UNP Q9H7B4 EXPRESSION TAG SEQADV 7QLB HIS A 0 UNP Q9H7B4 EXPRESSION TAG SEQADV 7QLB ASN A 13 UNP Q9H7B4 LYS 13 ENGINEERED MUTATION SEQADV 7QLB ARG A 140 UNP Q9H7B4 LYS 140 ENGINEERED MUTATION SEQRES 1 A 431 GLY SER HIS MET GLU PRO LEU LYS VAL GLU LYS PHE ALA SEQRES 2 A 431 THR ALA ASN ARG GLY ASN GLY LEU ARG ALA VAL THR PRO SEQRES 3 A 431 LEU ARG PRO GLY GLU LEU LEU PHE ARG SER ASP PRO LEU SEQRES 4 A 431 ALA TYR THR VAL CYS LYS GLY SER ARG GLY VAL VAL CYS SEQRES 5 A 431 ASP ARG CYS LEU LEU GLY LYS GLU LYS LEU MET ARG CYS SEQRES 6 A 431 SER GLN CYS ARG VAL ALA LYS TYR CYS SER ALA LYS CYS SEQRES 7 A 431 GLN LYS LYS ALA TRP PRO ASP HIS LYS ARG GLU CYS LYS SEQRES 8 A 431 CYS LEU LYS SER CYS LYS PRO ARG TYR PRO PRO ASP SER SEQRES 9 A 431 VAL ARG LEU LEU GLY ARG VAL VAL PHE LYS LEU MET ASP SEQRES 10 A 431 GLY ALA PRO SER GLU SER GLU LYS LEU TYR SER PHE TYR SEQRES 11 A 431 ASP LEU GLU SER ASN ILE ASN LYS LEU THR GLU ASP ARG SEQRES 12 A 431 LYS GLU GLY LEU ARG GLN LEU VAL MET THR PHE GLN HIS SEQRES 13 A 431 PHE MET ARG GLU GLU ILE GLN ASP ALA SER GLN LEU PRO SEQRES 14 A 431 PRO ALA PHE ASP LEU PHE GLU ALA PHE ALA LYS VAL ILE SEQRES 15 A 431 CYS ASN SER PHE THR ILE CYS ASN ALA GLU MET GLN GLU SEQRES 16 A 431 VAL GLY VAL GLY LEU TYR PRO SER ILE SER LEU LEU ASN SEQRES 17 A 431 HIS SER CYS ASP PRO ASN CYS SER ILE VAL PHE ASN GLY SEQRES 18 A 431 PRO HIS LEU LEU LEU ARG ALA VAL ARG ASP ILE GLU VAL SEQRES 19 A 431 GLY GLU GLU LEU THR ILE CYS TYR LEU ASP MET LEU MET SEQRES 20 A 431 THR SER GLU GLU ARG ARG LYS GLN LEU ARG ASP GLN TYR SEQRES 21 A 431 CYS PHE GLU CYS ASP CYS PHE ARG CYS GLN THR GLN ASP SEQRES 22 A 431 LYS ASP ALA ASP MET LEU THR GLY ASP GLU GLN VAL TRP SEQRES 23 A 431 LYS GLU VAL GLN GLU SER LEU LYS LYS ILE GLU GLU LEU SEQRES 24 A 431 LYS ALA HIS TRP LYS TRP GLU GLN VAL LEU ALA MET CYS SEQRES 25 A 431 GLN ALA ILE ILE SER SER ASN SER GLU ARG LEU PRO ASP SEQRES 26 A 431 ILE ASN ILE TYR GLN LEU LYS VAL LEU ASP CYS ALA MET SEQRES 27 A 431 ASP ALA CYS ILE ASN LEU GLY LEU LEU GLU GLU ALA LEU SEQRES 28 A 431 PHE TYR GLY THR ARG THR MET GLU PRO TYR ARG ILE PHE SEQRES 29 A 431 PHE PRO GLY SER HIS PRO VAL ARG GLY VAL GLN VAL MET SEQRES 30 A 431 LYS VAL GLY LYS LEU GLN LEU HIS GLN GLY MET PHE PRO SEQRES 31 A 431 GLN ALA MET LYS ASN LEU ARG LEU ALA PHE ASP ILE MET SEQRES 32 A 431 ARG VAL THR HIS GLY ARG GLU HIS SER LEU ILE GLU ASP SEQRES 33 A 431 LEU ILE LEU LEU LEU GLU GLU CYS ASP ALA ASN ILE ARG SEQRES 34 A 431 ALA SER HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET E4I A 504 17 HET E4I A 505 17 HET SAM A 506 49 HETNAM ZN ZINC ION HETNAM E4I 1-METHYLIMIDAZOLE-4-SULFONAMIDE HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 2 ZN 3(ZN 2+) FORMUL 5 E4I 2(C4 H7 N3 O2 S) FORMUL 7 SAM C15 H22 N6 O5 S FORMUL 8 HOH *510(H2 O) HELIX 1 AA1 LYS A 42 ARG A 45 5 4 HELIX 2 AA2 SER A 72 ALA A 79 1 8 HELIX 3 AA3 ALA A 79 CYS A 93 1 15 HELIX 4 AA4 PRO A 99 GLY A 115 1 17 HELIX 5 AA5 SER A 118 LYS A 122 5 5 HELIX 6 AA6 SER A 125 LEU A 129 5 5 HELIX 7 AA7 ASN A 132 LEU A 136 5 5 HELIX 8 AA8 THR A 137 MET A 155 1 19 HELIX 9 AA9 ASP A 161 LEU A 165 5 5 HELIX 10 AB1 ASP A 170 SER A 182 1 13 HELIX 11 AB2 SER A 200 LEU A 204 5 5 HELIX 12 AB3 THR A 245 CYS A 258 1 14 HELIX 13 AB4 CYS A 263 GLN A 269 1 7 HELIX 14 AB5 LYS A 271 LEU A 276 1 6 HELIX 15 AB6 ASP A 279 HIS A 299 1 21 HELIX 16 AB7 LYS A 301 SER A 314 1 14 HELIX 17 AB8 ASN A 324 GLY A 342 1 19 HELIX 18 AB9 LEU A 343 THR A 354 1 12 HELIX 19 AC1 THR A 354 PHE A 362 1 9 HELIX 20 AC2 HIS A 366 GLN A 383 1 18 HELIX 21 AC3 MET A 385 HIS A 404 1 20 HELIX 22 AC4 HIS A 408 ALA A 427 1 20 SHEET 1 AA1 2 VAL A 6 ALA A 10 0 SHEET 2 AA1 2 ASN A 16 ALA A 20 -1 O GLY A 17 N PHE A 9 SHEET 1 AA2 3 LEU A 29 SER A 33 0 SHEET 2 AA2 3 HIS A 220 ALA A 225 -1 O LEU A 223 N LEU A 30 SHEET 3 AA2 3 CYS A 212 ASN A 217 -1 N ASN A 217 O HIS A 220 SHEET 1 AA3 3 ALA A 37 VAL A 40 0 SHEET 2 AA3 3 GLU A 192 LEU A 197 -1 O LEU A 197 N ALA A 37 SHEET 3 AA3 3 PHE A 183 CYS A 186 -1 N ILE A 185 O VAL A 193 SHEET 1 AA4 2 MET A 60 ARG A 61 0 SHEET 2 AA4 2 LYS A 69 TYR A 70 -1 O TYR A 70 N MET A 60 SHEET 1 AA5 2 ASN A 205 HIS A 206 0 SHEET 2 AA5 2 THR A 236 ILE A 237 1 O ILE A 237 N ASN A 205 LINK SG CYS A 49 ZN ZN A 502 1555 1555 2.42 LINK SG CYS A 52 ZN ZN A 502 1555 1555 2.31 LINK SG CYS A 62 ZN ZN A 503 1555 1555 2.30 LINK SG CYS A 65 ZN ZN A 503 1555 1555 2.34 LINK SG CYS A 71 ZN ZN A 502 1555 1555 2.33 LINK SG CYS A 75 ZN ZN A 502 1555 1555 2.26 LINK NE2 HIS A 83 ZN ZN A 503 1555 1555 2.02 LINK SG CYS A 87 ZN ZN A 503 1555 1555 2.32 LINK SG CYS A 208 ZN ZN A 501 1555 1555 2.33 LINK SG CYS A 261 ZN ZN A 501 1555 1555 2.35 LINK SG CYS A 263 ZN ZN A 501 1555 1555 2.35 LINK SG CYS A 266 ZN ZN A 501 1555 1555 2.37 CRYST1 60.938 66.329 108.165 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016410 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015076 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009245 0.00000