HEADER HYDROLASE 23-DEC-21 7QOD TITLE NATIVE STRUCTURE OF A SMALL ALARMONE HYDROLASE (RELH) FROM TITLE 2 CORYNEBACTERIUM GLUTAMICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANOSINE POLYPHOSPHATE PYROPHOSPHOHYDROLASES/SYNTHETASES; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.7.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM ATCC 13032; SOURCE 3 ORGANISM_TAXID: 196627; SOURCE 4 GENE: CGL1313; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: LEMO21 KEYWDS HYDROLASE, ALARMONE, STRESS RESPONSE, HD DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR F.BISIAK,D.E.BRODERSEN,A.CHRENKOVA REVDAT 3 01-MAY-24 7QOD 1 REMARK REVDAT 2 27-JUL-22 7QOD 1 JRNL REVDAT 1 13-JUL-22 7QOD 0 JRNL AUTH F.BISIAK,A.CHRENKOVA,S.D.ZHANG,J.N.PEDERSEN,D.E.OTZEN, JRNL AUTH 2 Y.E.ZHANG,D.E.BRODERSEN JRNL TITL STRUCTURAL VARIATIONS BETWEEN SMALL ALARMONE HYDROLASE JRNL TITL 2 DIMERS SUPPORT DIFFERENT MODES OF REGULATION OF THE JRNL TITL 3 STRINGENT RESPONSE. JRNL REF J.BIOL.CHEM. V. 298 02142 2022 JRNL REFN ESSN 1083-351X JRNL PMID 35714769 JRNL DOI 10.1016/J.JBC.2022.102142 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 67431 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 3380 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.4300 - 5.3300 0.98 2680 139 0.1655 0.1616 REMARK 3 2 5.3200 - 4.2300 0.99 2685 142 0.1339 0.1555 REMARK 3 3 4.2300 - 3.7000 0.99 2693 142 0.1475 0.1862 REMARK 3 4 3.7000 - 3.3600 0.99 2677 144 0.1758 0.2003 REMARK 3 5 3.3600 - 3.1200 0.99 2724 145 0.1764 0.2290 REMARK 3 6 3.1200 - 2.9400 0.99 2677 140 0.1905 0.2404 REMARK 3 7 2.9400 - 2.7900 0.99 2688 140 0.1766 0.1889 REMARK 3 8 2.7900 - 2.6700 0.99 2691 144 0.1829 0.2172 REMARK 3 9 2.6700 - 2.5600 0.99 2696 142 0.1727 0.2299 REMARK 3 10 2.5600 - 2.4800 0.99 2648 140 0.1833 0.1989 REMARK 3 11 2.4800 - 2.4000 0.99 2714 138 0.1776 0.2708 REMARK 3 12 2.4000 - 2.3300 0.99 2660 142 0.1886 0.2543 REMARK 3 13 2.3300 - 2.2700 0.98 2683 141 0.1852 0.1931 REMARK 3 14 2.2700 - 2.2100 0.97 2607 134 0.1868 0.2404 REMARK 3 15 2.2100 - 2.1600 0.99 2686 145 0.1827 0.2183 REMARK 3 16 2.1600 - 2.1200 0.99 2637 140 0.2039 0.2529 REMARK 3 17 2.1200 - 2.0800 0.98 2683 146 0.2124 0.2759 REMARK 3 18 2.0700 - 2.0400 0.98 2654 137 0.2304 0.2412 REMARK 3 19 2.0400 - 2.0000 0.98 2653 143 0.2689 0.3061 REMARK 3 20 2.0000 - 1.9700 0.98 2653 141 0.2791 0.3233 REMARK 3 21 1.9700 - 1.9300 0.98 2686 143 0.2798 0.2935 REMARK 3 22 1.9300 - 1.9000 0.98 2638 138 0.3036 0.3072 REMARK 3 23 1.9000 - 1.8800 0.98 2651 137 0.2999 0.3279 REMARK 3 24 1.8800 - 1.8500 0.96 2587 137 0.3279 0.3518 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.8330 -4.9725 -7.9598 REMARK 3 T TENSOR REMARK 3 T11: 0.3055 T22: 0.2140 REMARK 3 T33: 0.2123 T12: 0.0022 REMARK 3 T13: 0.0149 T23: 0.0521 REMARK 3 L TENSOR REMARK 3 L11: 5.5783 L22: 7.8279 REMARK 3 L33: 5.4551 L12: 3.6851 REMARK 3 L13: 3.0333 L23: 4.5733 REMARK 3 S TENSOR REMARK 3 S11: -0.2416 S12: 0.2141 S13: 0.2585 REMARK 3 S21: -0.4480 S22: 0.1479 S23: 0.0620 REMARK 3 S31: -0.2495 S32: 0.0067 S33: 0.0388 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.8182 -5.7125 -14.5873 REMARK 3 T TENSOR REMARK 3 T11: 0.3263 T22: 0.2260 REMARK 3 T33: 0.2552 T12: -0.0009 REMARK 3 T13: 0.0128 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 2.9016 L22: 2.6927 REMARK 3 L33: 5.4766 L12: 0.4231 REMARK 3 L13: 0.8820 L23: 0.6071 REMARK 3 S TENSOR REMARK 3 S11: -0.0193 S12: 0.0413 S13: -0.2050 REMARK 3 S21: -0.2503 S22: 0.0376 S23: -0.0187 REMARK 3 S31: 0.1230 S32: -0.0038 S33: -0.0242 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.2271 -3.3374 -2.2600 REMARK 3 T TENSOR REMARK 3 T11: 0.4641 T22: 0.5332 REMARK 3 T33: 0.5419 T12: 0.0504 REMARK 3 T13: -0.0592 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 3.4918 L22: 2.5762 REMARK 3 L33: 3.6006 L12: -0.7286 REMARK 3 L13: 3.2429 L23: -1.8690 REMARK 3 S TENSOR REMARK 3 S11: -0.4258 S12: -0.2360 S13: 0.2109 REMARK 3 S21: 0.5617 S22: -0.3348 S23: -1.5374 REMARK 3 S31: -0.2158 S32: 1.8161 S33: 0.6308 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 68 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.6926 -14.3222 -8.5230 REMARK 3 T TENSOR REMARK 3 T11: 0.4093 T22: 0.2660 REMARK 3 T33: 0.3493 T12: 0.0828 REMARK 3 T13: -0.0079 T23: 0.0523 REMARK 3 L TENSOR REMARK 3 L11: 7.7843 L22: 3.7517 REMARK 3 L33: 8.0308 L12: 0.4372 REMARK 3 L13: -1.4764 L23: -1.4990 REMARK 3 S TENSOR REMARK 3 S11: -0.1818 S12: -0.3742 S13: -0.6463 REMARK 3 S21: 0.2681 S22: -0.0031 S23: -0.2830 REMARK 3 S31: 0.3770 S32: 0.6408 S33: 0.1923 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.6398 -2.1331 -18.1947 REMARK 3 T TENSOR REMARK 3 T11: 0.5013 T22: 0.3271 REMARK 3 T33: 0.4195 T12: -0.0434 REMARK 3 T13: -0.0518 T23: 0.0626 REMARK 3 L TENSOR REMARK 3 L11: 7.4951 L22: 2.3485 REMARK 3 L33: 3.4959 L12: 0.0339 REMARK 3 L13: 5.0542 L23: 0.6075 REMARK 3 S TENSOR REMARK 3 S11: -0.3623 S12: -0.0374 S13: 0.5956 REMARK 3 S21: 0.4115 S22: -0.0762 S23: -0.4644 REMARK 3 S31: -0.6266 S32: 0.1802 S33: 0.5415 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 108 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.6672 -1.0054 -21.6203 REMARK 3 T TENSOR REMARK 3 T11: 0.3205 T22: 0.2441 REMARK 3 T33: 0.2282 T12: -0.0113 REMARK 3 T13: -0.0067 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 4.9168 L22: 5.1131 REMARK 3 L33: 3.1232 L12: -1.9103 REMARK 3 L13: -1.0162 L23: -1.2791 REMARK 3 S TENSOR REMARK 3 S11: -0.1330 S12: -0.0642 S13: 0.2771 REMARK 3 S21: 0.7094 S22: 0.1514 S23: -0.1244 REMARK 3 S31: -0.1102 S32: -0.0943 S33: -0.0301 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 135 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.1968 19.7905 -18.9435 REMARK 3 T TENSOR REMARK 3 T11: 1.2510 T22: 0.9033 REMARK 3 T33: 1.0764 T12: 0.0411 REMARK 3 T13: 0.1198 T23: -0.2321 REMARK 3 L TENSOR REMARK 3 L11: 4.7035 L22: 8.7325 REMARK 3 L33: 6.4300 L12: 5.5868 REMARK 3 L13: 2.4482 L23: -0.4405 REMARK 3 S TENSOR REMARK 3 S11: -0.1356 S12: 0.2509 S13: 0.9009 REMARK 3 S21: 0.3919 S22: 1.0574 S23: -0.8114 REMARK 3 S31: -2.3650 S32: 0.0216 S33: -0.9430 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.7685 3.1508 -28.7816 REMARK 3 T TENSOR REMARK 3 T11: 0.3818 T22: 0.2725 REMARK 3 T33: 0.2485 T12: 0.0069 REMARK 3 T13: 0.0286 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 4.5912 L22: 5.6122 REMARK 3 L33: 4.2626 L12: -0.0098 REMARK 3 L13: -0.0535 L23: -0.4390 REMARK 3 S TENSOR REMARK 3 S11: 0.1171 S12: -0.0205 S13: 0.3812 REMARK 3 S21: -0.0652 S22: -0.0516 S23: -0.1063 REMARK 3 S31: -0.2991 S32: -0.0574 S33: -0.0434 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 188 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.5646 21.8394 -32.0298 REMARK 3 T TENSOR REMARK 3 T11: 1.0868 T22: 0.8566 REMARK 3 T33: 0.9089 T12: 0.2741 REMARK 3 T13: 0.0960 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 3.9512 L22: 3.6185 REMARK 3 L33: 8.3595 L12: 3.7701 REMARK 3 L13: 5.7403 L23: 5.5038 REMARK 3 S TENSOR REMARK 3 S11: -0.7253 S12: -1.4844 S13: -0.9584 REMARK 3 S21: -0.2820 S22: 0.6886 S23: -1.4540 REMARK 3 S31: -2.0674 S32: -1.5698 S33: -0.0112 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.6103 2.0057 -11.6612 REMARK 3 T TENSOR REMARK 3 T11: 0.3152 T22: 0.2730 REMARK 3 T33: 0.2987 T12: 0.0488 REMARK 3 T13: -0.0274 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.8017 L22: 2.5944 REMARK 3 L33: 4.9951 L12: 0.5783 REMARK 3 L13: 0.1083 L23: -1.1562 REMARK 3 S TENSOR REMARK 3 S11: -0.0200 S12: 0.1960 S13: 0.0993 REMARK 3 S21: -0.1861 S22: 0.0595 S23: 0.1675 REMARK 3 S31: -0.2908 S32: -0.3704 S33: -0.0177 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 62 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.4895 11.0951 -1.6117 REMARK 3 T TENSOR REMARK 3 T11: 0.6482 T22: 0.5213 REMARK 3 T33: 0.5254 T12: 0.1161 REMARK 3 T13: 0.0068 T23: -0.0375 REMARK 3 L TENSOR REMARK 3 L11: 8.9699 L22: 4.3217 REMARK 3 L33: 4.6665 L12: 0.7354 REMARK 3 L13: -2.7666 L23: -4.2819 REMARK 3 S TENSOR REMARK 3 S11: 0.0072 S12: -0.6872 S13: 0.7226 REMARK 3 S21: 0.1496 S22: 0.0941 S23: 0.8068 REMARK 3 S31: -0.7311 S32: -1.2892 S33: -0.1595 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 69 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.2658 12.9207 -12.8215 REMARK 3 T TENSOR REMARK 3 T11: 0.4984 T22: 0.4778 REMARK 3 T33: 0.5371 T12: 0.2044 REMARK 3 T13: -0.0724 T23: 0.0428 REMARK 3 L TENSOR REMARK 3 L11: 3.6602 L22: 8.1005 REMARK 3 L33: 4.2751 L12: 2.4841 REMARK 3 L13: -2.3867 L23: 1.9958 REMARK 3 S TENSOR REMARK 3 S11: 0.0568 S12: 0.0988 S13: 0.9216 REMARK 3 S21: -0.1637 S22: -0.0397 S23: 0.6959 REMARK 3 S31: -0.6338 S32: -0.8616 S33: 0.0053 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 89 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8997 7.0465 0.0543 REMARK 3 T TENSOR REMARK 3 T11: 1.1931 T22: 0.9393 REMARK 3 T33: 1.3761 T12: 0.2150 REMARK 3 T13: 0.0253 T23: -0.0838 REMARK 3 L TENSOR REMARK 3 L11: 3.5142 L22: 2.2110 REMARK 3 L33: 9.0793 L12: 1.5146 REMARK 3 L13: -5.4908 L23: -1.4943 REMARK 3 S TENSOR REMARK 3 S11: -0.7770 S12: -1.1410 S13: 3.8904 REMARK 3 S21: 2.6182 S22: 0.8876 S23: 0.9243 REMARK 3 S31: -1.8269 S32: -0.4740 S33: -0.1731 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 94 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1297 -0.3014 -2.3019 REMARK 3 T TENSOR REMARK 3 T11: 0.5528 T22: 1.0922 REMARK 3 T33: 0.8935 T12: 0.2535 REMARK 3 T13: 0.0767 T23: -0.2509 REMARK 3 L TENSOR REMARK 3 L11: 0.4633 L22: 4.8402 REMARK 3 L33: 6.0072 L12: 1.2403 REMARK 3 L13: -0.2182 L23: 1.7699 REMARK 3 S TENSOR REMARK 3 S11: -0.2112 S12: -1.3606 S13: 0.7534 REMARK 3 S21: 0.8088 S22: 0.1297 S23: 0.4607 REMARK 3 S31: -0.1937 S32: 0.0003 S33: 0.0929 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 111 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.7364 -8.1332 -6.6338 REMARK 3 T TENSOR REMARK 3 T11: 0.3378 T22: 0.3945 REMARK 3 T33: 0.3482 T12: -0.0222 REMARK 3 T13: 0.0104 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 3.7179 L22: 5.9990 REMARK 3 L33: 5.2795 L12: -2.6776 REMARK 3 L13: 3.5530 L23: -3.5980 REMARK 3 S TENSOR REMARK 3 S11: -0.2501 S12: 0.0131 S13: 0.2895 REMARK 3 S21: 0.4525 S22: -0.1501 S23: -0.1173 REMARK 3 S31: -0.3711 S32: -0.1641 S33: 0.4054 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 138 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8339 -15.0164 8.6751 REMARK 3 T TENSOR REMARK 3 T11: 1.0717 T22: 1.0823 REMARK 3 T33: 0.6182 T12: -0.1039 REMARK 3 T13: 0.0751 T23: -0.0730 REMARK 3 L TENSOR REMARK 3 L11: 8.1194 L22: 2.6188 REMARK 3 L33: 8.9436 L12: 3.3065 REMARK 3 L13: -3.4413 L23: -4.5178 REMARK 3 S TENSOR REMARK 3 S11: 1.3539 S12: -0.7635 S13: 0.7553 REMARK 3 S21: 2.4544 S22: -0.9474 S23: 0.0951 REMARK 3 S31: 0.2787 S32: -1.5131 S33: -0.2587 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 150 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9681 -12.5877 -8.8873 REMARK 3 T TENSOR REMARK 3 T11: 0.2921 T22: 0.4788 REMARK 3 T33: 0.4909 T12: -0.0643 REMARK 3 T13: 0.0051 T23: -0.0978 REMARK 3 L TENSOR REMARK 3 L11: 6.2690 L22: 8.3358 REMARK 3 L33: 7.7757 L12: -0.2798 REMARK 3 L13: 0.4662 L23: -2.8480 REMARK 3 S TENSOR REMARK 3 S11: -0.2893 S12: -0.3084 S13: -0.0727 REMARK 3 S21: 0.2324 S22: 0.0671 S23: 0.7092 REMARK 3 S31: 0.1112 S32: -0.6689 S33: 0.2067 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QOD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1292112462. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97624 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20190315 REMARK 200 DATA SCALING SOFTWARE : XDS 20190315 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67471 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 40.703 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 4.185 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.16 REMARK 200 R MERGE FOR SHELL (I) : 1.47500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.890 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: SEMET RELH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M IMIDAZOLE, 12% (W/V) PEG 20000, REMARK 280 PH 7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.28050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.28050 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.28050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 193 REMARK 465 HIS A 194 REMARK 465 HIS A 195 REMARK 465 HIS A 196 REMARK 465 PHE B 145 REMARK 465 ASN B 146 REMARK 465 ALA B 147 REMARK 465 GLY B 148 REMARK 465 GLN B 186 REMARK 465 SER B 187 REMARK 465 ALA B 188 REMARK 465 LEU B 189 REMARK 465 GLU B 190 REMARK 465 HIS B 191 REMARK 465 HIS B 192 REMARK 465 HIS B 193 REMARK 465 HIS B 194 REMARK 465 HIS B 195 REMARK 465 HIS B 196 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 171 NZ LYS B 174 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 68 114.28 -166.18 REMARK 500 ALA A 109 -58.48 -139.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 34 NE2 REMARK 620 2 HIS A 58 NE2 96.1 REMARK 620 3 ASP A 59 OD2 98.2 84.6 REMARK 620 4 ASP A 122 OD1 85.2 91.5 175.1 REMARK 620 5 HOH A 313 O 170.6 92.6 86.1 91.0 REMARK 620 6 HOH A 352 O 86.9 175.0 91.0 92.7 84.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 34 NE2 REMARK 620 2 HIS B 58 NE2 102.8 REMARK 620 3 ASP B 59 OD2 98.7 83.7 REMARK 620 4 ASP B 122 OD1 86.7 88.2 171.0 REMARK 620 5 HOH B 303 O 167.2 88.9 87.5 88.6 REMARK 620 6 HOH B 328 O 83.9 172.9 93.0 94.7 84.7 REMARK 620 N 1 2 3 4 5 DBREF 7QOD A 1 188 UNP Q8NQV9 Q8NQV9_CORGL 1 188 DBREF 7QOD B 1 188 UNP Q8NQV9 Q8NQV9_CORGL 1 188 SEQADV 7QOD LEU A 189 UNP Q8NQV9 EXPRESSION TAG SEQADV 7QOD GLU A 190 UNP Q8NQV9 EXPRESSION TAG SEQADV 7QOD HIS A 191 UNP Q8NQV9 EXPRESSION TAG SEQADV 7QOD HIS A 192 UNP Q8NQV9 EXPRESSION TAG SEQADV 7QOD HIS A 193 UNP Q8NQV9 EXPRESSION TAG SEQADV 7QOD HIS A 194 UNP Q8NQV9 EXPRESSION TAG SEQADV 7QOD HIS A 195 UNP Q8NQV9 EXPRESSION TAG SEQADV 7QOD HIS A 196 UNP Q8NQV9 EXPRESSION TAG SEQADV 7QOD LEU B 189 UNP Q8NQV9 EXPRESSION TAG SEQADV 7QOD GLU B 190 UNP Q8NQV9 EXPRESSION TAG SEQADV 7QOD HIS B 191 UNP Q8NQV9 EXPRESSION TAG SEQADV 7QOD HIS B 192 UNP Q8NQV9 EXPRESSION TAG SEQADV 7QOD HIS B 193 UNP Q8NQV9 EXPRESSION TAG SEQADV 7QOD HIS B 194 UNP Q8NQV9 EXPRESSION TAG SEQADV 7QOD HIS B 195 UNP Q8NQV9 EXPRESSION TAG SEQADV 7QOD HIS B 196 UNP Q8NQV9 EXPRESSION TAG SEQRES 1 A 196 MET ASN THR LEU SER PRO ARG LEU ARG LYS ALA MET ASN SEQRES 2 A 196 THR ALA ALA TRP ALA HIS ARG HIS HIS VAL ARG LYS GLY SEQRES 3 A 196 GLY GLY ILE PRO TYR VAL SER HIS LEU TYR SER VAL MET SEQRES 4 A 196 TYR LEU LEU ALA SER VAL THR ASN ASP GLU ASP VAL LEU SEQRES 5 A 196 ILE ALA GLY LEU LEU HIS ASP THR LEU GLU ASP VAL PRO SEQRES 6 A 196 GLU GLU TYR ASN SER ALA GLN LEU GLU ALA ASP PHE GLY SEQRES 7 A 196 PRO ARG VAL ARG GLU LEU VAL GLU GLU LEU THR LYS GLN SEQRES 8 A 196 PRO LEU LYS SER TRP LYS ALA ARG ALA ASP ALA TYR LEU SEQRES 9 A 196 LEU HIS LEU SER ALA GLY ALA SER LEU GLU ALA VAL LEU SEQRES 10 A 196 ILE SER THR ALA ASP LYS LEU HIS ASN LEU MET SER ILE SEQRES 11 A 196 LEU ASP ASP LEU GLU ILE HIS GLY GLU ASP LEU TRP GLN SEQRES 12 A 196 ARG PHE ASN ALA GLY LYS GLU GLN GLN ILE TRP TRP TYR SEQRES 13 A 196 SER GLU VAL TYR GLN ILE SER LEU GLN ARG LEU GLY PHE SEQRES 14 A 196 ASN GLU LEU ASN LYS GLN LEU GLY LEU CYS VAL GLU LYS SEQRES 15 A 196 LEU LEU LYS GLN SER ALA LEU GLU HIS HIS HIS HIS HIS SEQRES 16 A 196 HIS SEQRES 1 B 196 MET ASN THR LEU SER PRO ARG LEU ARG LYS ALA MET ASN SEQRES 2 B 196 THR ALA ALA TRP ALA HIS ARG HIS HIS VAL ARG LYS GLY SEQRES 3 B 196 GLY GLY ILE PRO TYR VAL SER HIS LEU TYR SER VAL MET SEQRES 4 B 196 TYR LEU LEU ALA SER VAL THR ASN ASP GLU ASP VAL LEU SEQRES 5 B 196 ILE ALA GLY LEU LEU HIS ASP THR LEU GLU ASP VAL PRO SEQRES 6 B 196 GLU GLU TYR ASN SER ALA GLN LEU GLU ALA ASP PHE GLY SEQRES 7 B 196 PRO ARG VAL ARG GLU LEU VAL GLU GLU LEU THR LYS GLN SEQRES 8 B 196 PRO LEU LYS SER TRP LYS ALA ARG ALA ASP ALA TYR LEU SEQRES 9 B 196 LEU HIS LEU SER ALA GLY ALA SER LEU GLU ALA VAL LEU SEQRES 10 B 196 ILE SER THR ALA ASP LYS LEU HIS ASN LEU MET SER ILE SEQRES 11 B 196 LEU ASP ASP LEU GLU ILE HIS GLY GLU ASP LEU TRP GLN SEQRES 12 B 196 ARG PHE ASN ALA GLY LYS GLU GLN GLN ILE TRP TRP TYR SEQRES 13 B 196 SER GLU VAL TYR GLN ILE SER LEU GLN ARG LEU GLY PHE SEQRES 14 B 196 ASN GLU LEU ASN LYS GLN LEU GLY LEU CYS VAL GLU LYS SEQRES 15 B 196 LEU LEU LYS GLN SER ALA LEU GLU HIS HIS HIS HIS HIS SEQRES 16 B 196 HIS HET MN A 201 1 HET PG4 A 202 13 HET MN B 201 1 HETNAM MN MANGANESE (II) ION HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 3 MN 2(MN 2+) FORMUL 4 PG4 C8 H18 O5 FORMUL 6 HOH *107(H2 O) HELIX 1 AA1 SER A 5 HIS A 19 1 15 HELIX 2 AA2 TYR A 31 SER A 44 1 14 HELIX 3 AA3 ASP A 48 HIS A 58 1 11 HELIX 4 AA4 ASP A 59 VAL A 64 1 6 HELIX 5 AA5 ASN A 69 GLU A 87 1 19 HELIX 6 AA6 SER A 95 ALA A 109 1 15 HELIX 7 AA7 SER A 112 HIS A 137 1 26 HELIX 8 AA8 ASP A 140 ALA A 147 1 8 HELIX 9 AA9 GLY A 148 GLY A 168 1 21 HELIX 10 AB1 ASN A 170 HIS A 192 1 23 HELIX 11 AB2 SER B 5 HIS B 19 1 15 HELIX 12 AB3 TYR B 31 SER B 44 1 14 HELIX 13 AB4 ASP B 48 HIS B 58 1 11 HELIX 14 AB5 ASP B 59 VAL B 64 1 6 HELIX 15 AB6 ASN B 69 THR B 89 1 21 HELIX 16 AB7 SER B 95 ALA B 109 1 15 HELIX 17 AB8 SER B 112 GLY B 138 1 27 HELIX 18 AB9 GLU B 139 ARG B 144 5 6 HELIX 19 AC1 GLU B 150 GLY B 168 1 19 HELIX 20 AC2 ASN B 170 LYS B 185 1 16 LINK NE2 HIS A 34 MN MN A 201 1555 1555 2.25 LINK NE2 HIS A 58 MN MN A 201 1555 1555 2.24 LINK OD2 ASP A 59 MN MN A 201 1555 1555 2.35 LINK OD1 ASP A 122 MN MN A 201 1555 1555 2.18 LINK MN MN A 201 O HOH A 313 1555 1555 2.08 LINK MN MN A 201 O HOH A 352 1555 1555 2.16 LINK NE2 HIS B 34 MN MN B 201 1555 1555 2.25 LINK NE2 HIS B 58 MN MN B 201 1555 1555 2.25 LINK OD2 ASP B 59 MN MN B 201 1555 1555 2.37 LINK OD1 ASP B 122 MN MN B 201 1555 1555 2.18 LINK MN MN B 201 O HOH B 303 1555 1555 2.33 LINK MN MN B 201 O HOH B 328 1555 1555 2.22 CRYST1 94.332 94.332 80.561 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010601 0.006120 0.000000 0.00000 SCALE2 0.000000 0.012241 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012413 0.00000