HEADER TRANSFERASE 04-JAN-22 7QPE TITLE CRYSTAL STRUCTURE OF SERINE HYDROXYMETHYLTRANSFERASE, ISOFORM 6 FROM TITLE 2 ARABIDOPSIS THALIANA (SHM6) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE HYDROXYMETHYLTRANSFERASE 6; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ATSHMT6,GLYCINE HYDROXYMETHYLTRANSFERASE 6,SERINE METHYLASE COMPND 5 6; COMPND 6 EC: 2.1.2.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: SHM6, SHMT6, AT1G22020, F2E2.7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS ONE-CARBON METABOLISM, TETRAHYDROFOLATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.RUSZKOWSKI,M.GRZECHOWIAK,B.SEKULA REVDAT 2 31-JAN-24 7QPE 1 REMARK REVDAT 1 24-AUG-22 7QPE 0 JRNL AUTH I.NOGUES,B.SEKULA,S.ANGELACCIO,M.GRZECHOWIAK,A.TRAMONTI, JRNL AUTH 2 R.CONTESTABILE,M.RUSZKOWSKI JRNL TITL ARABIDOPSIS THALIANA SERINE HYDROXYMETHYLTRANSFERASES: JRNL TITL 2 FUNCTIONS, STRUCTURES, AND PERSPECTIVES. JRNL REF PLANT PHYSIOL BIOCHEM. V. 187 37 2022 JRNL REFN ESSN 1873-2690 JRNL PMID 35947902 JRNL DOI 10.1016/J.PLAPHY.2022.07.025 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 62.0 REMARK 3 NUMBER OF REFLECTIONS : 49043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 981 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 63.4000 - 4.1700 1.00 11642 238 0.1814 0.2044 REMARK 3 2 4.1700 - 3.3100 1.00 11150 228 0.1932 0.2266 REMARK 3 3 3.3100 - 2.8900 1.00 11018 224 0.2607 0.2519 REMARK 3 4 2.8900 - 2.6200 0.71 7752 158 0.2792 0.3217 REMARK 3 5 2.6200 - 2.4400 0.36 3933 81 0.2931 0.3312 REMARK 3 6 2.4400 - 2.2900 0.18 1968 40 0.3602 0.3792 REMARK 3 7 2.2900 - 2.1800 0.06 599 12 0.4218 0.5104 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.207 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.803 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6873 REMARK 3 ANGLE : 0.948 9273 REMARK 3 CHIRALITY : 0.051 992 REMARK 3 PLANARITY : 0.007 1209 REMARK 3 DIHEDRAL : 14.947 2552 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 124 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.2357 -1.7392 110.4569 REMARK 3 T TENSOR REMARK 3 T11: 0.3482 T22: 0.8092 REMARK 3 T33: 0.3291 T12: 0.0652 REMARK 3 T13: 0.0572 T23: -0.0302 REMARK 3 L TENSOR REMARK 3 L11: 1.6178 L22: 2.6044 REMARK 3 L33: 1.6715 L12: 0.5719 REMARK 3 L13: 0.4179 L23: -0.8299 REMARK 3 S TENSOR REMARK 3 S11: -0.0375 S12: -0.4729 S13: -0.2054 REMARK 3 S21: 0.2383 S22: 0.1981 S23: -0.0636 REMARK 3 S31: 0.1822 S32: -0.1399 S33: -0.1541 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 221 THROUGH 381 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.0208 16.7916 85.8365 REMARK 3 T TENSOR REMARK 3 T11: 0.3627 T22: 0.4165 REMARK 3 T33: 0.2744 T12: -0.1235 REMARK 3 T13: -0.0778 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 2.7654 L22: 3.2855 REMARK 3 L33: 4.0776 L12: 0.2578 REMARK 3 L13: -0.9225 L23: 0.1330 REMARK 3 S TENSOR REMARK 3 S11: -0.0961 S12: -0.1845 S13: 0.2729 REMARK 3 S21: -0.3648 S22: 0.2254 S23: 0.1818 REMARK 3 S31: -0.4722 S32: -0.0420 S33: -0.1055 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 382 THROUGH 598 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.6091 21.0549 101.0887 REMARK 3 T TENSOR REMARK 3 T11: 0.4484 T22: 0.6514 REMARK 3 T33: 0.3179 T12: -0.0583 REMARK 3 T13: -0.0059 T23: -0.1258 REMARK 3 L TENSOR REMARK 3 L11: 2.2773 L22: 3.1053 REMARK 3 L33: 1.2620 L12: 0.8449 REMARK 3 L13: 0.2709 L23: -0.0061 REMARK 3 S TENSOR REMARK 3 S11: -0.1172 S12: -0.1774 S13: 0.1513 REMARK 3 S21: 0.0950 S22: 0.1955 S23: -0.0039 REMARK 3 S31: -0.1343 S32: -0.0036 S33: -0.0617 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 124 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.4436 -1.7587 28.6397 REMARK 3 T TENSOR REMARK 3 T11: 0.3815 T22: 0.4459 REMARK 3 T33: 0.2133 T12: -0.2745 REMARK 3 T13: 0.0441 T23: 0.0361 REMARK 3 L TENSOR REMARK 3 L11: 1.9165 L22: 2.0382 REMARK 3 L33: 1.3858 L12: 0.0667 REMARK 3 L13: 0.2192 L23: 0.2935 REMARK 3 S TENSOR REMARK 3 S11: -0.1752 S12: 0.3834 S13: -0.1683 REMARK 3 S21: -0.3833 S22: 0.0624 S23: -0.0052 REMARK 3 S31: 0.1045 S32: 0.0399 S33: 0.0987 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 221 THROUGH 381 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.5441 16.7972 53.2800 REMARK 3 T TENSOR REMARK 3 T11: 0.5358 T22: 0.3608 REMARK 3 T33: 0.3735 T12: -0.2595 REMARK 3 T13: -0.0779 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.3735 L22: 3.1917 REMARK 3 L33: 3.0076 L12: 0.7365 REMARK 3 L13: 0.0749 L23: -0.4457 REMARK 3 S TENSOR REMARK 3 S11: -0.0308 S12: 0.0098 S13: 0.1763 REMARK 3 S21: 0.4786 S22: -0.0590 S23: 0.1914 REMARK 3 S31: -0.3760 S32: 0.0121 S33: 0.0840 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 382 THROUGH 509 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.2738 17.9354 41.2545 REMARK 3 T TENSOR REMARK 3 T11: 0.3935 T22: 0.2966 REMARK 3 T33: 0.2461 T12: -0.2438 REMARK 3 T13: -0.0729 T23: 0.0497 REMARK 3 L TENSOR REMARK 3 L11: 1.5565 L22: 2.8986 REMARK 3 L33: 2.4336 L12: -0.0061 REMARK 3 L13: 0.0492 L23: 0.1080 REMARK 3 S TENSOR REMARK 3 S11: -0.1706 S12: 0.1051 S13: 0.2175 REMARK 3 S21: 0.0058 S22: 0.0140 S23: 0.0283 REMARK 3 S31: -0.3539 S32: -0.0120 S33: 0.1263 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 510 THROUGH 598 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.2067 26.4016 32.4650 REMARK 3 T TENSOR REMARK 3 T11: 0.6311 T22: 0.5021 REMARK 3 T33: 0.4993 T12: -0.1540 REMARK 3 T13: -0.2610 T23: 0.1117 REMARK 3 L TENSOR REMARK 3 L11: 2.6837 L22: 2.4261 REMARK 3 L33: 3.4372 L12: -0.4380 REMARK 3 L13: -0.8321 L23: 0.7983 REMARK 3 S TENSOR REMARK 3 S11: -0.0082 S12: 0.3568 S13: 0.7066 REMARK 3 S21: -0.5610 S22: -0.1011 S23: 0.4236 REMARK 3 S31: -0.7921 S32: -0.5615 S33: 0.2362 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QPE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1292120024. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49107 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 105.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 62.0 REMARK 200 DATA REDUNDANCY : 38.50 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 7.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 105.2 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 33.10 REMARK 200 R MERGE FOR SHELL (I) : 0.03100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 95.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7PZZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.18 M AMMONIUM NITRATE, 0.09 M SODIUM REMARK 280 CACODYLATE 5.3, 20% V/V PEG SMEAR LOW, 10% ETHYLENE GLYCOL REMARK 280 (BASED ON THE D1 CONDITION OF THE BCS SCREEN, MOLECULAR REMARK 280 DIMENSIONS). CRYOPROTECTION WAS OBTAINED BY INCREASING THE REMARK 280 ETHYLENE GLYCOL CONCENTRATION TO 20 % IN THE DROP WITH CRYSTALS., REMARK 280 PH 5.3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.76833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 201.53667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 100.76833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 201.53667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 100.76833 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 201.53667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 100.76833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 201.53667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 61150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 129.68300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 667 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 669 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 261 REMARK 465 GLY A 262 REMARK 465 GLY A 263 REMARK 465 HIS A 264 REMARK 465 MET A 265 REMARK 465 SER A 266 REMARK 465 HIS A 267 REMARK 465 GLY A 268 REMARK 465 TYR A 269 REMARK 465 TYR A 270 REMARK 465 THR A 271 REMARK 465 PRO A 272 REMARK 465 GLY A 273 REMARK 465 GLY A 274 REMARK 465 LYS A 275 REMARK 465 LYS A 393 REMARK 465 LYS A 394 REMARK 465 GLN A 395 REMARK 465 SER A 396 REMARK 465 ILE A 397 REMARK 465 ASN A 398 REMARK 465 LEU A 399 REMARK 465 ASN A 400 REMARK 465 HIS A 401 REMARK 465 CYS A 402 REMARK 465 GLU A 403 REMARK 465 SER A 404 REMARK 465 ASN A 405 REMARK 465 GLN A 558 REMARK 465 ARG A 559 REMARK 465 GLU A 560 REMARK 465 HIS A 561 REMARK 465 GLY A 562 REMARK 465 LYS A 563 REMARK 465 LEU A 564 REMARK 465 GLN A 565 REMARK 465 LYS A 566 REMARK 465 GLU A 567 REMARK 465 PRO A 568 REMARK 465 LEU A 569 REMARK 465 LYS A 570 REMARK 465 SER A 571 REMARK 465 ILE A 572 REMARK 465 TYR A 573 REMARK 465 HIS A 574 REMARK 465 CYS A 575 REMARK 465 MET A 599 REMARK 465 SER B 261 REMARK 465 GLY B 262 REMARK 465 GLY B 263 REMARK 465 HIS B 264 REMARK 465 MET B 265 REMARK 465 SER B 266 REMARK 465 HIS B 267 REMARK 465 GLY B 268 REMARK 465 TYR B 269 REMARK 465 TYR B 270 REMARK 465 THR B 271 REMARK 465 PRO B 272 REMARK 465 GLY B 273 REMARK 465 GLY B 274 REMARK 465 LYS B 275 REMARK 465 LYS B 393 REMARK 465 LYS B 394 REMARK 465 GLN B 395 REMARK 465 SER B 396 REMARK 465 ILE B 397 REMARK 465 ASN B 398 REMARK 465 LEU B 399 REMARK 465 ASN B 400 REMARK 465 HIS B 401 REMARK 465 CYS B 402 REMARK 465 GLU B 403 REMARK 465 SER B 404 REMARK 465 ASN B 405 REMARK 465 GLN B 558 REMARK 465 ARG B 559 REMARK 465 GLU B 560 REMARK 465 HIS B 561 REMARK 465 GLY B 562 REMARK 465 LYS B 563 REMARK 465 LEU B 564 REMARK 465 GLN B 565 REMARK 465 LYS B 566 REMARK 465 GLU B 567 REMARK 465 PRO B 568 REMARK 465 LEU B 569 REMARK 465 LYS B 570 REMARK 465 SER B 571 REMARK 465 ILE B 572 REMARK 465 TYR B 573 REMARK 465 HIS B 574 REMARK 465 CYS B 575 REMARK 465 MET B 599 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 320 -121.49 43.54 REMARK 500 SER A 321 69.29 -150.08 REMARK 500 LYS A 374 -97.65 -94.89 REMARK 500 ASN A 478 -128.18 -133.33 REMARK 500 LEU A 536 -164.30 -101.04 REMARK 500 SER A 555 49.75 -80.70 REMARK 500 THR A 590 5.16 -69.25 REMARK 500 ALA A 596 -1.79 79.69 REMARK 500 SER B 190 45.15 -143.45 REMARK 500 ALA B 196 65.78 -153.23 REMARK 500 VAL B 277 -78.34 -115.16 REMARK 500 SER B 320 -119.15 45.04 REMARK 500 SER B 321 62.56 -153.38 REMARK 500 LYS B 374 -102.45 -93.65 REMARK 500 THR B 473 -2.70 63.57 REMARK 500 ASN B 478 -133.75 -131.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7PZZ RELATED DB: PDB REMARK 900 RELATED ID: 7Q00 RELATED DB: PDB REMARK 900 RELATED ID: 7QX8 RELATED DB: PDB DBREF 7QPE A 127 599 UNP Q9LM59 GLYC6_ARATH 127 599 DBREF 7QPE B 127 599 UNP Q9LM59 GLYC6_ARATH 127 599 SEQADV 7QPE SER A 124 UNP Q9LM59 EXPRESSION TAG SEQADV 7QPE ASN A 125 UNP Q9LM59 EXPRESSION TAG SEQADV 7QPE ALA A 126 UNP Q9LM59 EXPRESSION TAG SEQADV 7QPE SER B 124 UNP Q9LM59 EXPRESSION TAG SEQADV 7QPE ASN B 125 UNP Q9LM59 EXPRESSION TAG SEQADV 7QPE ALA B 126 UNP Q9LM59 EXPRESSION TAG SEQRES 1 A 476 SER ASN ALA ILE GLU SER ARG ARG ALA VAL VAL ARG ALA SEQRES 2 A 476 TRP GLY ASN GLN SER ILE GLU GLU ALA ASP PRO GLU ILE SEQRES 3 A 476 HIS GLU PHE MET GLU LYS GLU LYS GLN ARG GLN PHE ARG SEQRES 4 A 476 GLY ILE GLU LEU ILE ALA SER GLU ASN PHE VAL CYS ARG SEQRES 5 A 476 ALA VAL MET GLU ALA LEU GLY SER HIS LEU THR ASN LYS SEQRES 6 A 476 TYR SER GLU GLY MET PRO GLY ALA ARG TYR TYR THR GLY SEQRES 7 A 476 ASN GLN TYR ILE ASP GLN ILE GLU ILE LEU CYS GLN GLU SEQRES 8 A 476 ARG ALA LEU ALA ALA PHE GLY LEU ASN HIS GLU LYS TRP SEQRES 9 A 476 GLY VAL ASN VAL GLN PRO TYR SER CYS THR SER ALA ASN SEQRES 10 A 476 PHE ALA VAL PHE THR GLY LEU LEU MET PRO GLY GLU ARG SEQRES 11 A 476 ILE MET GLY LEU ASP SER PRO SER GLY GLY HIS MET SER SEQRES 12 A 476 HIS GLY TYR TYR THR PRO GLY GLY LYS LYS VAL SER GLY SEQRES 13 A 476 ALA SER ILE PHE PHE GLU SER PHE PRO TYR LYS VAL ASP SEQRES 14 A 476 PRO ARG THR GLY TYR ILE ASP TYR ASP LYS LEU GLU GLU SEQRES 15 A 476 LYS ALA LEU ASP TYR ARG PRO LYS ILE LEU ILE CYS GLY SEQRES 16 A 476 GLY SER SER TYR PRO ARG ASP TRP GLU PHE PRO ARG PHE SEQRES 17 A 476 ARG HIS ILE ALA ASP LYS CYS GLY ALA VAL LEU MET PHE SEQRES 18 A 476 ASP MET ALA GLN ILE SER GLY LEU VAL ALA ALA LYS GLU SEQRES 19 A 476 SER PRO ASN PRO PHE ASP TYR CYS ASP ILE VAL THR SER SEQRES 20 A 476 THR THR HIS LYS SER LEU ARG GLY PRO ARG GLY GLY ILE SEQRES 21 A 476 ILE PHE TYR LYS ARG GLY LEU LYS PRO LYS LYS GLN SER SEQRES 22 A 476 ILE ASN LEU ASN HIS CYS GLU SER ASN ILE GLN TYR ASP SEQRES 23 A 476 PHE GLU GLU LYS ILE ASN PHE SER VAL PHE PRO SER LEU SEQRES 24 A 476 GLN GLY GLY PRO HIS ASN ASN HIS ILE ALA ALA LEU ALA SEQRES 25 A 476 ILE ALA LEU LYS GLN ALA ALA SER PRO GLU TYR LYS LEU SEQRES 26 A 476 TYR MET ARG GLN VAL LYS LYS ASN ALA LYS ALA LEU ALA SEQRES 27 A 476 SER ALA LEU ILE SER ARG LYS CYS LYS LEU ILE THR GLY SEQRES 28 A 476 GLY THR ASP ASN HIS LEU LEU LEU TRP ASP LEU THR PRO SEQRES 29 A 476 LEU GLY LEU THR GLY LYS VAL TYR GLU LYS VAL CYS GLU SEQRES 30 A 476 MET CYS HIS ILE THR VAL ASN LYS VAL ALA ILE PHE SER SEQRES 31 A 476 GLU ASN GLY VAL ILE SER PRO GLY GLY VAL ARG ILE GLY SEQRES 32 A 476 SER PRO ALA MET THR SER ARG GLY CYS LEU GLU PRO GLU SEQRES 33 A 476 PHE GLU THR MET ALA ASP PHE LEU TYR ARG ALA ALA GLN SEQRES 34 A 476 ILE ALA SER ALA ALA GLN ARG GLU HIS GLY LYS LEU GLN SEQRES 35 A 476 LYS GLU PRO LEU LYS SER ILE TYR HIS CYS LYS GLU ILE SEQRES 36 A 476 ALA ASP LEU ARG ASN GLN VAL GLU ALA PHE ALA THR GLN SEQRES 37 A 476 PHE ALA MET PRO ALA PHE ASP MET SEQRES 1 B 476 SER ASN ALA ILE GLU SER ARG ARG ALA VAL VAL ARG ALA SEQRES 2 B 476 TRP GLY ASN GLN SER ILE GLU GLU ALA ASP PRO GLU ILE SEQRES 3 B 476 HIS GLU PHE MET GLU LYS GLU LYS GLN ARG GLN PHE ARG SEQRES 4 B 476 GLY ILE GLU LEU ILE ALA SER GLU ASN PHE VAL CYS ARG SEQRES 5 B 476 ALA VAL MET GLU ALA LEU GLY SER HIS LEU THR ASN LYS SEQRES 6 B 476 TYR SER GLU GLY MET PRO GLY ALA ARG TYR TYR THR GLY SEQRES 7 B 476 ASN GLN TYR ILE ASP GLN ILE GLU ILE LEU CYS GLN GLU SEQRES 8 B 476 ARG ALA LEU ALA ALA PHE GLY LEU ASN HIS GLU LYS TRP SEQRES 9 B 476 GLY VAL ASN VAL GLN PRO TYR SER CYS THR SER ALA ASN SEQRES 10 B 476 PHE ALA VAL PHE THR GLY LEU LEU MET PRO GLY GLU ARG SEQRES 11 B 476 ILE MET GLY LEU ASP SER PRO SER GLY GLY HIS MET SER SEQRES 12 B 476 HIS GLY TYR TYR THR PRO GLY GLY LYS LYS VAL SER GLY SEQRES 13 B 476 ALA SER ILE PHE PHE GLU SER PHE PRO TYR LYS VAL ASP SEQRES 14 B 476 PRO ARG THR GLY TYR ILE ASP TYR ASP LYS LEU GLU GLU SEQRES 15 B 476 LYS ALA LEU ASP TYR ARG PRO LYS ILE LEU ILE CYS GLY SEQRES 16 B 476 GLY SER SER TYR PRO ARG ASP TRP GLU PHE PRO ARG PHE SEQRES 17 B 476 ARG HIS ILE ALA ASP LYS CYS GLY ALA VAL LEU MET PHE SEQRES 18 B 476 ASP MET ALA GLN ILE SER GLY LEU VAL ALA ALA LYS GLU SEQRES 19 B 476 SER PRO ASN PRO PHE ASP TYR CYS ASP ILE VAL THR SER SEQRES 20 B 476 THR THR HIS LYS SER LEU ARG GLY PRO ARG GLY GLY ILE SEQRES 21 B 476 ILE PHE TYR LYS ARG GLY LEU LYS PRO LYS LYS GLN SER SEQRES 22 B 476 ILE ASN LEU ASN HIS CYS GLU SER ASN ILE GLN TYR ASP SEQRES 23 B 476 PHE GLU GLU LYS ILE ASN PHE SER VAL PHE PRO SER LEU SEQRES 24 B 476 GLN GLY GLY PRO HIS ASN ASN HIS ILE ALA ALA LEU ALA SEQRES 25 B 476 ILE ALA LEU LYS GLN ALA ALA SER PRO GLU TYR LYS LEU SEQRES 26 B 476 TYR MET ARG GLN VAL LYS LYS ASN ALA LYS ALA LEU ALA SEQRES 27 B 476 SER ALA LEU ILE SER ARG LYS CYS LYS LEU ILE THR GLY SEQRES 28 B 476 GLY THR ASP ASN HIS LEU LEU LEU TRP ASP LEU THR PRO SEQRES 29 B 476 LEU GLY LEU THR GLY LYS VAL TYR GLU LYS VAL CYS GLU SEQRES 30 B 476 MET CYS HIS ILE THR VAL ASN LYS VAL ALA ILE PHE SER SEQRES 31 B 476 GLU ASN GLY VAL ILE SER PRO GLY GLY VAL ARG ILE GLY SEQRES 32 B 476 SER PRO ALA MET THR SER ARG GLY CYS LEU GLU PRO GLU SEQRES 33 B 476 PHE GLU THR MET ALA ASP PHE LEU TYR ARG ALA ALA GLN SEQRES 34 B 476 ILE ALA SER ALA ALA GLN ARG GLU HIS GLY LYS LEU GLN SEQRES 35 B 476 LYS GLU PRO LEU LYS SER ILE TYR HIS CYS LYS GLU ILE SEQRES 36 B 476 ALA ASP LEU ARG ASN GLN VAL GLU ALA PHE ALA THR GLN SEQRES 37 B 476 PHE ALA MET PRO ALA PHE ASP MET HET NO3 A 601 4 HETNAM NO3 NITRATE ION FORMUL 3 NO3 N O3 1- FORMUL 4 HOH *127(H2 O) HELIX 1 AA1 SER A 124 ASN A 139 1 16 HELIX 2 AA2 SER A 141 ASP A 146 1 6 HELIX 3 AA3 ASP A 146 ARG A 162 1 17 HELIX 4 AA4 CYS A 174 GLY A 182 1 9 HELIX 5 AA5 SER A 183 LYS A 188 5 6 HELIX 6 AA6 ASN A 202 PHE A 220 1 19 HELIX 7 AA7 SER A 235 LEU A 248 1 14 HELIX 8 AA8 SER A 278 PHE A 284 1 7 HELIX 9 AA9 ASP A 299 ARG A 311 1 13 HELIX 10 AB1 GLU A 327 GLY A 339 1 13 HELIX 11 AB2 ILE A 349 ALA A 355 1 7 HELIX 12 AB3 ASN A 360 TYR A 364 5 5 HELIX 13 AB4 ASP A 409 PHE A 419 1 11 HELIX 14 AB5 HIS A 427 ALA A 442 1 16 HELIX 15 AB6 SER A 443 SER A 466 1 24 HELIX 16 AB7 THR A 473 GLY A 475 5 3 HELIX 17 AB8 THR A 486 GLY A 489 5 4 HELIX 18 AB9 THR A 491 MET A 501 1 11 HELIX 19 AC1 SER A 527 ARG A 533 1 7 HELIX 20 AC2 LEU A 536 SER A 555 1 20 HELIX 21 AC3 GLU A 577 THR A 590 1 14 HELIX 22 AC4 ASN B 125 ASN B 139 1 15 HELIX 23 AC5 SER B 141 ASP B 146 1 6 HELIX 24 AC6 ASP B 146 ARG B 162 1 17 HELIX 25 AC7 CYS B 174 GLY B 182 1 9 HELIX 26 AC8 SER B 183 LYS B 188 5 6 HELIX 27 AC9 ASN B 202 PHE B 220 1 19 HELIX 28 AD1 SER B 235 LEU B 248 1 14 HELIX 29 AD2 SER B 278 PHE B 284 1 7 HELIX 30 AD3 ASP B 299 ARG B 311 1 13 HELIX 31 AD4 GLU B 327 GLY B 339 1 13 HELIX 32 AD5 ILE B 349 ALA B 355 1 7 HELIX 33 AD6 ASN B 360 TYR B 364 5 5 HELIX 34 AD7 ASP B 409 PHE B 419 1 11 HELIX 35 AD8 HIS B 427 ALA B 442 1 16 HELIX 36 AD9 SER B 443 ARG B 467 1 25 HELIX 37 AE1 THR B 473 GLY B 475 5 3 HELIX 38 AE2 THR B 491 CYS B 502 1 12 HELIX 39 AE3 SER B 527 ARG B 533 1 7 HELIX 40 AE4 LEU B 536 SER B 555 1 20 HELIX 41 AE5 GLU B 577 THR B 590 1 14 SHEET 1 AA1 2 ILE A 164 GLU A 165 0 SHEET 2 AA1 2 ILE A 504 THR A 505 1 O THR A 505 N ILE A 164 SHEET 1 AA2 2 GLY A 192 MET A 193 0 SHEET 2 AA2 2 ALA A 196 ARG A 197 -1 O ALA A 196 N MET A 193 SHEET 1 AA3 7 TRP A 227 ASN A 230 0 SHEET 2 AA3 7 GLY A 382 LYS A 387 -1 O TYR A 386 N GLY A 228 SHEET 3 AA3 7 ILE A 367 THR A 371 -1 N VAL A 368 O PHE A 385 SHEET 4 AA3 7 VAL A 341 MET A 346 1 N MET A 346 O THR A 369 SHEET 5 AA3 7 ILE A 314 GLY A 318 1 N LEU A 315 O VAL A 341 SHEET 6 AA3 7 ARG A 253 MET A 255 1 N MET A 255 O ILE A 316 SHEET 7 AA3 7 GLU A 285 SER A 286 1 O GLU A 285 N ILE A 254 SHEET 1 AA4 4 LYS A 470 LEU A 471 0 SHEET 2 AA4 4 LEU A 480 ASP A 484 -1 O ASP A 484 N LYS A 470 SHEET 3 AA4 4 GLY A 522 GLY A 526 -1 O VAL A 523 N TRP A 483 SHEET 4 AA4 4 ASN A 507 LYS A 508 -1 N ASN A 507 O ARG A 524 SHEET 1 AA5 2 ILE A 511 PHE A 512 0 SHEET 2 AA5 2 ILE A 518 SER A 519 -1 O SER A 519 N ILE A 511 SHEET 1 AA6 2 ILE B 164 GLU B 165 0 SHEET 2 AA6 2 ILE B 504 THR B 505 1 O THR B 505 N ILE B 164 SHEET 1 AA7 2 GLY B 192 MET B 193 0 SHEET 2 AA7 2 ALA B 196 ARG B 197 -1 O ALA B 196 N MET B 193 SHEET 1 AA8 7 TRP B 227 ASN B 230 0 SHEET 2 AA8 7 GLY B 382 LYS B 387 -1 O TYR B 386 N GLY B 228 SHEET 3 AA8 7 ILE B 367 THR B 371 -1 N VAL B 368 O PHE B 385 SHEET 4 AA8 7 VAL B 341 MET B 346 1 N MET B 346 O THR B 369 SHEET 5 AA8 7 ILE B 314 GLY B 318 1 N LEU B 315 O VAL B 341 SHEET 6 AA8 7 ARG B 253 MET B 255 1 N MET B 255 O ILE B 316 SHEET 7 AA8 7 GLU B 285 SER B 286 1 O GLU B 285 N ILE B 254 SHEET 1 AA9 4 LYS B 470 LEU B 471 0 SHEET 2 AA9 4 LEU B 480 ASP B 484 -1 O ASP B 484 N LYS B 470 SHEET 3 AA9 4 ILE B 518 GLY B 526 -1 O VAL B 523 N TRP B 483 SHEET 4 AA9 4 ASN B 507 PHE B 512 -1 N ILE B 511 O SER B 519 CISPEP 1 PHE A 419 PRO A 420 0 10.62 CISPEP 2 PHE B 419 PRO B 420 0 8.00 CRYST1 129.683 129.683 302.305 90.00 90.00 120.00 P 64 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007711 0.004452 0.000000 0.00000 SCALE2 0.000000 0.008904 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003308 0.00000