HEADER HYDROLASE 05-JAN-22 7QPL TITLE CRYSTAL STRUCTURE OF PHOSPHOSERINE PHOSPHATASE (SERB) FROM BRUCELLA TITLE 2 MELITENSIS IN COMPLEX WITH PHOSPHATE AND MAGNESIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: O-PHOSPHOSERINE PHOSPHOHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHOSPHOSERINE PHOSPHATASE; COMPND 5 EC: 3.1.3.3; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: SERB SEQUENCE IS PRECEDED BY THE REST OF HRV-3C COMPND 8 PROTEASE CLEAVAGE SITE (GPGS) AT N-TERM SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUCELLA MELITENSIS BV. 1 STR. 16M; SOURCE 3 ORGANISM_TAXID: 224914; SOURCE 4 STRAIN: 16M / ATCC 23456 / NCTC 10094; SOURCE 5 ATCC: 23456; SOURCE 6 GENE: BMEI0615; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS HAD PHOSPHATASE, ACT-LIKE DOMAIN, ROSSMANOID FOLD, L-SERINE KEYWDS 2 BIOSYNTHESIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.PIERSON,J.WOUTERS REVDAT 2 01-MAY-24 7QPL 1 REMARK REVDAT 1 18-JAN-23 7QPL 0 JRNL AUTH E.PIERSON,J.WOUTERS JRNL TITL CRYSTAL STRUCTURE OF PHOSPHOSERINE PHOSPHATASE (SERB) FROM JRNL TITL 2 BRUCELLA MELITENSIS IN COMPLEX WITH PHOSPHATE AND MAGNESIUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 45353 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.2700 - 4.4500 1.00 2961 159 0.1363 0.1612 REMARK 3 2 4.4500 - 3.5300 1.00 2916 131 0.1337 0.1596 REMARK 3 3 3.5300 - 3.0800 1.00 2853 154 0.1565 0.1783 REMARK 3 4 3.0800 - 2.8000 1.00 2862 142 0.1690 0.1918 REMARK 3 5 2.8000 - 2.6000 1.00 2825 160 0.1861 0.2064 REMARK 3 6 2.6000 - 2.4500 1.00 2866 131 0.1766 0.2048 REMARK 3 7 2.4500 - 2.3300 1.00 2784 183 0.1798 0.1852 REMARK 3 8 2.3300 - 2.2200 1.00 2872 132 0.1612 0.1870 REMARK 3 9 2.2200 - 2.1400 1.00 2776 167 0.1818 0.2061 REMARK 3 10 2.1400 - 2.0600 1.00 2842 148 0.1848 0.2395 REMARK 3 11 2.0600 - 2.0000 1.00 2834 156 0.1862 0.2032 REMARK 3 12 2.0000 - 1.9400 1.00 2810 164 0.1975 0.2090 REMARK 3 13 1.9400 - 1.8900 1.00 2832 141 0.2141 0.2380 REMARK 3 14 1.8900 - 1.8500 1.00 2809 157 0.2417 0.2757 REMARK 3 15 1.8500 - 1.8000 0.81 2262 133 0.2811 0.3149 REMARK 3 16 1.8000 - 1.7700 0.36 1053 30 0.3060 0.3945 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.198 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.772 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2308 REMARK 3 ANGLE : 1.138 3109 REMARK 3 CHIRALITY : 0.066 369 REMARK 3 PLANARITY : 0.009 401 REMARK 3 DIHEDRAL : 8.514 346 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3364 -24.5861 30.1167 REMARK 3 T TENSOR REMARK 3 T11: 0.6182 T22: 0.2686 REMARK 3 T33: 0.4650 T12: 0.0466 REMARK 3 T13: -0.0336 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 1.8584 L22: 7.6607 REMARK 3 L33: 3.2129 L12: -1.7128 REMARK 3 L13: 1.4053 L23: -2.0626 REMARK 3 S TENSOR REMARK 3 S11: 0.1130 S12: 0.1266 S13: 0.0009 REMARK 3 S21: 0.3551 S22: -0.1504 S23: -1.1090 REMARK 3 S31: 0.4716 S32: 0.4266 S33: 0.0321 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 87 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7764 -5.9558 15.4591 REMARK 3 T TENSOR REMARK 3 T11: 0.3640 T22: 0.2914 REMARK 3 T33: 0.3709 T12: 0.0063 REMARK 3 T13: 0.0830 T23: 0.0310 REMARK 3 L TENSOR REMARK 3 L11: 1.1995 L22: 2.1981 REMARK 3 L33: 4.5825 L12: -0.4272 REMARK 3 L13: 1.5771 L23: -0.5888 REMARK 3 S TENSOR REMARK 3 S11: -0.1321 S12: -0.0963 S13: -0.0340 REMARK 3 S21: 0.2745 S22: 0.2018 S23: 0.2739 REMARK 3 S31: -0.3176 S32: -0.5472 S33: -0.0694 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 231 THROUGH 295 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5242 -14.3637 24.0282 REMARK 3 T TENSOR REMARK 3 T11: 0.4614 T22: 0.1946 REMARK 3 T33: 0.3446 T12: -0.0165 REMARK 3 T13: -0.0108 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 1.9231 L22: 4.2815 REMARK 3 L33: 4.0991 L12: 0.1620 REMARK 3 L13: -0.3983 L23: -0.6905 REMARK 3 S TENSOR REMARK 3 S11: -0.0980 S12: 0.0044 S13: -0.1128 REMARK 3 S21: 0.4979 S22: 0.0844 S23: -0.2030 REMARK 3 S31: 0.1672 S32: 0.0762 S33: 0.0045 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QPL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1292119931. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978565 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47522 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 38.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 41.40 REMARK 200 R MERGE (I) : 0.09586 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.7700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 54.6 REMARK 200 DATA REDUNDANCY IN SHELL : 41.30 REMARK 200 R MERGE FOR SHELL (I) : 2.94200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.430 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ALPHAFOLD MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM FORMATE, 0.1M SODIUM REMARK 280 PHOSPHATE PH 6.8, 22% W/V BCS PEG SMEAR MMW, 10% V/V GLYCEROL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 71.60500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.60500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 71.60500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.60500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 71.60500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 71.60500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 71.60500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 71.60500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 71.60500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 71.60500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 71.60500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 71.60500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 71.60500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 71.60500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 71.60500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 71.60500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 71.60500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 71.60500 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 71.60500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 71.60500 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 71.60500 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 71.60500 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 71.60500 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 71.60500 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 71.60500 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 71.60500 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 71.60500 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 71.60500 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 71.60500 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 71.60500 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 71.60500 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 71.60500 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 71.60500 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 71.60500 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 71.60500 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 71.60500 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 777 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 778 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 MET A 5 REMARK 465 SER A 6 REMARK 465 GLN A 7 REMARK 465 GLN A 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 271 O HOH A 501 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 271 CB LYS A 271 CG -0.206 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 271 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 LYS A 271 CB - CG - CD ANGL. DEV. = -31.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 95 -69.48 -90.51 REMARK 500 THR A 98 -75.08 -122.03 REMARK 500 LEU A 241 -163.88 -123.73 REMARK 500 ASP A 286 -162.61 -100.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 778 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A 779 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A 780 DISTANCE = 6.52 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 415 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 94 OD2 REMARK 620 2 ASP A 96 O 87.3 REMARK 620 3 ASP A 251 OD1 88.4 86.7 REMARK 620 4 PO4 A 416 O3 96.0 101.9 170.4 REMARK 620 5 HOH A 528 O 90.2 174.2 88.0 83.5 REMARK 620 6 HOH A 559 O 176.1 89.9 88.6 87.3 92.2 REMARK 620 N 1 2 3 4 5 DBREF 7QPL A 1 303 UNP Q8YI30 Q8YI30_BRUME 1 302 SEQADV 7QPL GLY A -3 UNP Q8YI30 EXPRESSION TAG SEQADV 7QPL PRO A -2 UNP Q8YI30 EXPRESSION TAG SEQADV 7QPL GLY A -1 UNP Q8YI30 EXPRESSION TAG SEQADV 7QPL SER A 0 UNP Q8YI30 EXPRESSION TAG SEQADV 7QPL LEU A 2 UNP Q8YI30 INSERTION SEQRES 1 A 307 GLY PRO GLY SER MET LEU LEU SER MET SER GLN GLN VAL SEQRES 2 A 307 SER LEU VAL ALA THR LEU ILE ALA ASN PRO ALA LYS ALA SEQRES 3 A 307 ALA LEU ALA PRO SER LEU GLY ILE LYS ALA SER ALA ALA SEQRES 4 A 307 VAL ASN ALA THR GLY LEU TYR TRP LEU ALA ASP ASP ILE SEQRES 5 A 307 ALA CYS ASP ILE PRO LEU PRO LEU GLY MET GLU ALA SER SEQRES 6 A 307 GLU ALA ASP ALA SER LEU ARG ALA THR LEU ASP GLY ALA SEQRES 7 A 307 PRO ILE ASP VAL VAL VAL GLN GLU GLN GLU ARG ARG ARG SEQRES 8 A 307 LYS LYS ILE LEU ILE ALA ASP MET ASP SER THR MET ILE SEQRES 9 A 307 GLY GLN GLU CYS ILE ASP GLU LEU ALA GLU GLU ALA GLY SEQRES 10 A 307 LEU ARG ASP HIS VAL ALA ALA ILE THR ALA ARG ALA MET SEQRES 11 A 307 ASN GLY GLU ILE ALA PHE GLU PRO ALA LEU ARG GLU ARG SEQRES 12 A 307 VAL ALA LEU LEU LYS GLY LEU PRO LEU SER VAL ILE ASP SEQRES 13 A 307 LYS VAL ILE SER THR ARG ILE THR LEU THR PRO GLY GLY SEQRES 14 A 307 PRO GLN LEU VAL ARG THR MET ARG LYS HIS GLY ALA TYR SEQRES 15 A 307 THR ALA LEU VAL SER GLY GLY PHE THR SER PHE THR ARG SEQRES 16 A 307 ARG ILE ALA GLU MET ILE GLY PHE ASN GLU GLU ARG ALA SEQRES 17 A 307 ASN ARG LEU ILE ASP ASP GLY THR ARG LEU THR GLY THR SEQRES 18 A 307 VAL ALA GLU PRO ILE LEU GLY ARG GLU ALA LYS VAL GLU SEQRES 19 A 307 LYS LEU VAL GLU ILE ALA GLU ARG VAL GLY LEU THR PRO SEQRES 20 A 307 GLU ASP ALA ILE ALA VAL GLY ASP GLY ALA ASN ASP LEU SEQRES 21 A 307 GLY MET ILE GLN LEU ALA GLY THR GLY VAL ALA LEU HIS SEQRES 22 A 307 ALA LYS PRO ALA VAL ALA ALA GLN ALA LYS MET ARG ILE SEQRES 23 A 307 ASP HIS GLY ASP LEU THR ALA LEU LEU TYR ILE GLN GLY SEQRES 24 A 307 TYR ARG LYS ALA ASP PHE VAL GLN HET PEG A 401 7 HET GOL A 402 6 HET FMT A 403 3 HET GOL A 404 6 HET FMT A 405 3 HET FMT A 406 3 HET FMT A 407 3 HET GOL A 408 6 HET GOL A 409 6 HET GOL A 410 6 HET EDO A 411 4 HET EDO A 412 4 HET GOL A 413 6 HET FMT A 414 3 HET MG A 415 1 HET PO4 A 416 5 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETNAM FMT FORMIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 PEG C4 H10 O3 FORMUL 3 GOL 6(C3 H8 O3) FORMUL 4 FMT 5(C H2 O2) FORMUL 12 EDO 2(C2 H6 O2) FORMUL 16 MG MG 2+ FORMUL 17 PO4 O4 P 3- FORMUL 18 HOH *280(H2 O) HELIX 1 AA1 PRO A 19 ALA A 22 5 4 HELIX 2 AA2 ALA A 25 VAL A 36 1 12 HELIX 3 AA3 GLU A 59 LEU A 71 1 13 HELIX 4 AA4 GLU A 103 ALA A 112 1 10 HELIX 5 AA5 LEU A 114 GLY A 128 1 15 HELIX 6 AA6 ALA A 131 LEU A 142 1 12 HELIX 7 AA7 LEU A 148 ILE A 159 1 12 HELIX 8 AA8 GLY A 164 HIS A 175 1 12 HELIX 9 AA9 THR A 187 GLY A 198 1 12 HELIX 10 AB1 GLY A 224 VAL A 239 1 16 HELIX 11 AB2 THR A 242 GLU A 244 5 3 HELIX 12 AB3 GLY A 252 ASN A 254 5 3 HELIX 13 AB4 ASP A 255 ALA A 262 1 8 HELIX 14 AB5 LYS A 271 ALA A 276 1 6 HELIX 15 AB6 THR A 288 GLN A 294 1 7 HELIX 16 AB7 ARG A 297 PHE A 301 5 5 SHEET 1 AA1 4 TYR A 42 ALA A 45 0 SHEET 2 AA1 4 ALA A 49 PRO A 53 -1 O ASP A 51 N TYR A 42 SHEET 3 AA1 4 LEU A 11 ALA A 17 -1 N ALA A 13 O ILE A 52 SHEET 4 AA1 4 ILE A 76 GLU A 82 -1 O ASP A 77 N ILE A 16 SHEET 1 AA2 6 GLU A 201 ASN A 205 0 SHEET 2 AA2 6 TYR A 178 PHE A 186 1 N LEU A 181 O GLU A 201 SHEET 3 AA2 6 ILE A 90 ASP A 94 1 N ALA A 93 O VAL A 182 SHEET 4 AA2 6 ALA A 246 GLY A 250 1 O ILE A 247 N ILE A 90 SHEET 5 AA2 6 THR A 264 LEU A 268 1 O VAL A 266 N ALA A 248 SHEET 6 AA2 6 MET A 280 ILE A 282 1 O MET A 280 N ALA A 267 SHEET 1 AA3 2 LEU A 207 ASP A 209 0 SHEET 2 AA3 2 LEU A 214 VAL A 218 -1 O THR A 217 N ILE A 208 LINK OD2 ASP A 94 MG MG A 415 1555 1555 2.03 LINK O ASP A 96 MG MG A 415 1555 1555 2.18 LINK OD1 ASP A 251 MG MG A 415 1555 1555 2.10 LINK MG MG A 415 O3 PO4 A 416 1555 1555 2.05 LINK MG MG A 415 O HOH A 528 1555 1555 2.10 LINK MG MG A 415 O HOH A 559 1555 1555 2.06 CISPEP 1 GLU A 220 PRO A 221 0 -1.87 CRYST1 143.210 143.210 143.210 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006983 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006983 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006983 0.00000