HEADER LIGASE 12-JAN-22 7QRW TITLE CRYSTAL STRUCTURE OF NHL DOMAIN OF TRIM3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM 4 OF TRIPARTITE MOTIF-CONTAINING PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BRAIN-EXPRESSED RING FINGER PROTEIN,RING FINGER PROTEIN 22, COMPND 5 RING FINGER PROTEIN 97; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRIM3, BERP, RNF22, RNF97; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: -R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGTVL2 KEYWDS E3, TRIM, TRIM3, NHL DOMAIN, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 31-JAN-24 7QRW 1 REMARK REVDAT 2 14-DEC-22 7QRW 1 JRNL REVDAT 1 04-MAY-22 7QRW 0 JRNL AUTH A.CHAIKUAD,R.ZHUBI,C.TREDUP,S.KNAPP JRNL TITL COMPARATIVE STRUCTURAL ANALYSES OF THE NHL DOMAINS FROM THE JRNL TITL 2 HUMAN E3 LIGASE TRIM-NHL FAMILY. JRNL REF IUCRJ V. 9 720 2022 JRNL REFN ESSN 2052-2525 JRNL PMID 36381143 JRNL DOI 10.1107/S2052252522008582 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 29599 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1522 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2062 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2105 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 141 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.45000 REMARK 3 B22 (A**2) : 0.45000 REMARK 3 B33 (A**2) : -0.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.105 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.473 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2221 ; 0.016 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2029 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3008 ; 1.538 ; 1.631 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4649 ; 1.405 ; 1.588 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 286 ; 7.341 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;32.025 ;22.154 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 339 ;14.308 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.925 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 270 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2642 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 576 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 469 A 488 REMARK 3 ORIGIN FOR THE GROUP (A): 47.3896 5.5419 90.3505 REMARK 3 T TENSOR REMARK 3 T11: 0.1165 T22: 0.2091 REMARK 3 T33: 0.0523 T12: 0.0572 REMARK 3 T13: -0.0089 T23: 0.0401 REMARK 3 L TENSOR REMARK 3 L11: 5.1748 L22: 1.2300 REMARK 3 L33: 1.6017 L12: 0.4347 REMARK 3 L13: 0.0440 L23: -0.5049 REMARK 3 S TENSOR REMARK 3 S11: -0.1961 S12: -0.6659 S13: -0.0776 REMARK 3 S21: 0.2090 S22: 0.1815 S23: -0.0533 REMARK 3 S31: -0.1083 S32: -0.3534 S33: 0.0146 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 489 A 503 REMARK 3 ORIGIN FOR THE GROUP (A): 42.9822 15.7030 85.0776 REMARK 3 T TENSOR REMARK 3 T11: 0.2626 T22: 0.1881 REMARK 3 T33: 0.0653 T12: 0.2116 REMARK 3 T13: -0.0012 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 3.4042 L22: 5.8066 REMARK 3 L33: 4.6751 L12: 3.1031 REMARK 3 L13: 2.2603 L23: -0.9969 REMARK 3 S TENSOR REMARK 3 S11: -0.1796 S12: -0.3092 S13: 0.1293 REMARK 3 S21: 0.3363 S22: 0.1502 S23: 0.1486 REMARK 3 S31: -0.5075 S32: -0.6234 S33: 0.0294 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 504 A 568 REMARK 3 ORIGIN FOR THE GROUP (A): 33.1004 13.9627 84.2160 REMARK 3 T TENSOR REMARK 3 T11: 0.1669 T22: 0.3610 REMARK 3 T33: 0.0911 T12: 0.1876 REMARK 3 T13: 0.0735 T23: 0.0521 REMARK 3 L TENSOR REMARK 3 L11: 2.5879 L22: 0.6346 REMARK 3 L33: 2.9187 L12: -0.6346 REMARK 3 L13: 1.5070 L23: -1.3413 REMARK 3 S TENSOR REMARK 3 S11: -0.2560 S12: -0.5631 S13: 0.1980 REMARK 3 S21: 0.2198 S22: 0.4254 S23: 0.1075 REMARK 3 S31: -0.3889 S32: -0.9044 S33: -0.1695 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 569 A 654 REMARK 3 ORIGIN FOR THE GROUP (A): 38.5191 16.8614 65.9856 REMARK 3 T TENSOR REMARK 3 T11: 0.0357 T22: 0.1893 REMARK 3 T33: 0.1158 T12: 0.0449 REMARK 3 T13: -0.0014 T23: 0.0709 REMARK 3 L TENSOR REMARK 3 L11: 2.9872 L22: 0.6511 REMARK 3 L33: 1.5223 L12: -0.7935 REMARK 3 L13: 1.7382 L23: -0.3206 REMARK 3 S TENSOR REMARK 3 S11: -0.1545 S12: 0.1229 S13: 0.3284 REMARK 3 S21: 0.1319 S22: 0.0544 S23: -0.1257 REMARK 3 S31: -0.1123 S32: -0.1767 S33: 0.1001 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 655 A 740 REMARK 3 ORIGIN FOR THE GROUP (A): 53.9366 10.2080 74.3044 REMARK 3 T TENSOR REMARK 3 T11: 0.0315 T22: 0.0588 REMARK 3 T33: 0.0880 T12: 0.0075 REMARK 3 T13: -0.0158 T23: 0.0224 REMARK 3 L TENSOR REMARK 3 L11: 1.4276 L22: 0.5134 REMARK 3 L33: 1.7624 L12: -0.3347 REMARK 3 L13: 0.4471 L23: -0.7514 REMARK 3 S TENSOR REMARK 3 S11: -0.0346 S12: 0.1067 S13: 0.1271 REMARK 3 S21: 0.0541 S22: 0.0033 S23: -0.0366 REMARK 3 S31: -0.0088 S32: 0.0050 S33: 0.0313 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 741 A 744 REMARK 3 ORIGIN FOR THE GROUP (A): 61.7385 17.3840 80.6108 REMARK 3 T TENSOR REMARK 3 T11: 0.0446 T22: 0.0288 REMARK 3 T33: 0.0882 T12: -0.0116 REMARK 3 T13: -0.0469 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 3.7274 L22: 1.7465 REMARK 3 L33: 10.9178 L12: -0.8525 REMARK 3 L13: -0.6146 L23: -3.1289 REMARK 3 S TENSOR REMARK 3 S11: 0.1180 S12: 0.1007 S13: -0.2482 REMARK 3 S21: 0.0302 S22: -0.1397 S23: 0.0245 REMARK 3 S31: 0.0143 S32: 0.3254 S33: 0.0217 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7QRW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1292120175. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31138 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 47.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 16.00 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : 17.30 REMARK 200 R MERGE FOR SHELL (I) : 0.58700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7B2R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4M AMMSO4, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.61450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.46650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.46650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.30725 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.46650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.46650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 120.92175 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.46650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.46650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.30725 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.46650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.46650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 120.92175 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 80.61450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1029 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 464 REMARK 465 MET A 465 REMARK 465 ASN A 466 REMARK 465 PRO A 467 REMARK 465 ILE A 468 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 687 CG ASP A 687 OD2 0.141 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 487 -62.79 -103.67 REMARK 500 GLN A 490 -76.33 -124.19 REMARK 500 LYS A 520 -65.80 -100.31 REMARK 500 ARG A 526 129.63 -39.29 REMARK 500 ASN A 631 -167.47 -105.01 REMARK 500 ALA A 671 80.27 90.77 REMARK 500 THR A 673 -111.85 -126.23 REMARK 500 GLN A 717 -116.05 -119.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR A 537 13.65 REMARK 500 REMARK 500 REMARK: NULL DBREF 7QRW A 466 744 UNP O75382 TRIM3_HUMAN 347 625 SEQADV 7QRW SER A 464 UNP O75382 EXPRESSION TAG SEQADV 7QRW MET A 465 UNP O75382 EXPRESSION TAG SEQRES 1 A 281 SER MET ASN PRO ILE GLU ASP GLU LEU VAL PHE ARG VAL SEQRES 2 A 281 GLY SER ARG GLY ARG GLU LYS GLY GLU PHE THR ASN LEU SEQRES 3 A 281 GLN GLY VAL SER ALA ALA SER SER GLY ARG ILE VAL VAL SEQRES 4 A 281 ALA ASP SER ASN ASN GLN CYS ILE GLN VAL PHE SER ASN SEQRES 5 A 281 GLU GLY GLN PHE LYS PHE ARG PHE GLY VAL ARG GLY ARG SEQRES 6 A 281 SER PRO GLY GLN LEU GLN ARG PRO THR GLY VAL ALA VAL SEQRES 7 A 281 ASP THR ASN GLY ASP ILE ILE VAL ALA ASP TYR ASP ASN SEQRES 8 A 281 ARG TRP VAL SER ILE PHE SER PRO GLU GLY LYS PHE LYS SEQRES 9 A 281 THR LYS ILE GLY ALA GLY ARG LEU MET GLY PRO LYS GLY SEQRES 10 A 281 VAL ALA VAL ASP ARG ASN GLY HIS ILE ILE VAL VAL ASP SEQRES 11 A 281 ASN LYS SER CYS CYS VAL PHE THR PHE GLN PRO ASN GLY SEQRES 12 A 281 LYS LEU VAL GLY ARG PHE GLY GLY ARG GLY ALA THR ASP SEQRES 13 A 281 ARG HIS PHE ALA GLY PRO HIS PHE VAL ALA VAL ASN ASN SEQRES 14 A 281 LYS ASN GLU ILE VAL VAL THR ASP PHE HIS ASN HIS SER SEQRES 15 A 281 VAL LYS VAL TYR SER ALA ASP GLY GLU PHE LEU PHE LYS SEQRES 16 A 281 PHE GLY SER HIS GLY GLU GLY ASN GLY GLN PHE ASN ALA SEQRES 17 A 281 PRO THR GLY VAL ALA VAL ASP SER ASN GLY ASN ILE ILE SEQRES 18 A 281 VAL ALA ASP TRP GLY ASN SER ARG ILE GLN VAL PHE ASP SEQRES 19 A 281 SER SER GLY SER PHE LEU SER TYR ILE ASN THR SER ALA SEQRES 20 A 281 GLU PRO LEU TYR GLY PRO GLN GLY LEU ALA LEU THR SER SEQRES 21 A 281 ASP GLY HIS VAL VAL VAL ALA ASP ALA GLY ASN HIS CYS SEQRES 22 A 281 PHE LYS ALA TYR ARG TYR LEU GLN HET SO4 A 801 5 HET SO4 A 802 5 HET SO4 A 803 5 HET GOL A 804 6 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *141(H2 O) HELIX 1 AA1 GLY A 733 HIS A 735 5 3 SHEET 1 AA1 4 LEU A 472 VAL A 476 0 SHEET 2 AA1 4 CYS A 736 TYR A 740 -1 O ALA A 739 N VAL A 473 SHEET 3 AA1 4 VAL A 727 ASP A 731 -1 N VAL A 727 O TYR A 740 SHEET 4 AA1 4 PRO A 716 LEU A 721 -1 N ALA A 720 O VAL A 728 SHEET 1 AA2 4 LEU A 489 ALA A 495 0 SHEET 2 AA2 4 ARG A 499 ASP A 504 -1 O VAL A 501 N SER A 493 SHEET 3 AA2 4 CYS A 509 SER A 514 -1 O PHE A 513 N ILE A 500 SHEET 4 AA2 4 PHE A 519 PHE A 523 -1 O PHE A 523 N ILE A 510 SHEET 1 AA3 4 PRO A 536 VAL A 541 0 SHEET 2 AA3 4 ILE A 547 ASP A 551 -1 O ILE A 548 N ALA A 540 SHEET 3 AA3 4 TRP A 556 PHE A 560 -1 O SER A 558 N VAL A 549 SHEET 4 AA3 4 PHE A 566 ILE A 570 -1 O THR A 568 N ILE A 559 SHEET 1 AA4 4 PRO A 578 VAL A 583 0 SHEET 2 AA4 4 ILE A 589 ASP A 593 -1 O ILE A 590 N ALA A 582 SHEET 3 AA4 4 CYS A 598 PHE A 602 -1 O CYS A 598 N ASP A 593 SHEET 4 AA4 4 LEU A 608 GLY A 613 -1 O VAL A 609 N THR A 601 SHEET 1 AA5 4 PRO A 625 VAL A 630 0 SHEET 2 AA5 4 ILE A 636 ASP A 640 -1 O VAL A 637 N ALA A 629 SHEET 3 AA5 4 SER A 645 TYR A 649 -1 O SER A 645 N ASP A 640 SHEET 4 AA5 4 PHE A 655 PHE A 659 -1 O PHE A 657 N VAL A 648 SHEET 1 AA6 4 PRO A 672 VAL A 677 0 SHEET 2 AA6 4 ILE A 683 ASP A 687 -1 O ILE A 684 N ALA A 676 SHEET 3 AA6 4 ARG A 692 PHE A 696 -1 O GLN A 694 N VAL A 685 SHEET 4 AA6 4 PHE A 702 TYR A 705 -1 O LEU A 703 N VAL A 695 CRYST1 58.933 58.933 161.229 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016968 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016968 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006202 0.00000