data_7QTN # _entry.id 7QTN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.384 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7QTN pdb_00007qtn 10.2210/pdb7qtn/pdb WWPDB D_1292120219 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-01-25 2 'Structure model' 1 1 2023-08-23 3 'Structure model' 1 2 2024-01-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' citation 4 2 'Structure model' citation_author 5 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' 13 2 'Structure model' '_citation_author.identifier_ORCID' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7QTN _pdbx_database_status.recvd_initial_deposition_date 2022-01-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email e.ennifar@unistra.fr _pdbx_contact_author.name_first Eric _pdbx_contact_author.name_last Ennifar _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-5076-846X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ennifar, E.' 1 ? 'Micura, R.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 50 _citation.language ? _citation.page_first 6038 _citation.page_last 6051 _citation.title 'Towards a comprehensive understanding of RNA deamination: synthesis and properties of xanthosine-modified RNA.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkac477 _citation.pdbx_database_id_PubMed 35687141 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mair, S.' 1 ? primary 'Erharter, K.' 2 ? primary 'Renard, E.' 3 ? primary 'Brillet, K.' 4 ? primary 'Brunner, M.' 5 ? primary 'Lusser, A.' 6 0000-0002-2226-9081 primary 'Kreutz, C.' 7 0000-0002-7018-9326 primary 'Ennifar, E.' 8 ? primary 'Micura, R.' 9 0000-0003-2661-6105 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*GP*GP*UP*AP*(RY)P*UP*GP*CP*GP*(XAN)P*UP*AP*CP*C)-3') ; 4481.706 1 ? ? ? ? 2 polymer syn ;RNA (5'-R(*GP*GP*UP*AP*CP*UP*GP*CP*GP*(XAM)P*UP*AP*CP*C)-3') ; 4480.699 1 ? ? ? ? 3 water nat water 18.015 121 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no yes 'GGUA(RY)UGCG(HYJ)UACC' GGUAXUGCGGUACC A ? 2 polyribonucleotide no yes 'GGUACUGCG(XMP)UACC' GGUACUGCGXUACC B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 U n 1 4 A n 1 5 RY n 1 6 U n 1 7 G n 1 8 C n 1 9 G n 1 10 HYJ n 1 11 U n 1 12 A n 1 13 C n 1 14 C n 2 1 G n 2 2 G n 2 3 U n 2 4 A n 2 5 C n 2 6 U n 2 7 G n 2 8 C n 2 9 G n 2 10 XMP n 2 11 U n 2 12 A n 2 13 C n 2 14 C n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 14 'synthetic construct' ? 32630 ? 2 1 sample 1 14 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 HYJ 'L-RNA linking' n ;9-[(2~{R},3~{R},4~{S},5~{R})-3,4-bis(oxidanyl)-5-[[tris(oxidanyl)-$l^{5}-phosphanyl]oxymethyl]oxolan-2-yl]-2-oxidanyl-1~{H}-purin-6-one ; ? 'C10 H13 N4 O9 P' 364.205 RY 'RNA linking' . ;5'-3,6-dihydrocytidylic acid ; ? 'C9 H16 N3 O8 P' 325.212 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 XMP non-polymer . "XANTHOSINE-5'-MONOPHOSPHATE" '5-MONOPHOSPHATE-9-BETA-D-RIBOFURANOSYL XANTHINE' 'C10 H14 N4 O9 P 1' 365.213 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 U 3 3 3 U U A . n A 1 4 A 4 4 4 A A A . n A 1 5 RY 5 5 5 RY RY A . n A 1 6 U 6 6 6 U U A . n A 1 7 G 7 7 7 G G A . n A 1 8 C 8 8 8 C C A . n A 1 9 G 9 9 9 G G A . n A 1 10 HYJ 10 10 10 HYJ XAN A . n A 1 11 U 11 11 11 U U A . n A 1 12 A 12 12 12 A A A . n A 1 13 C 13 13 13 C C A . n A 1 14 C 14 14 14 C C A . n B 2 1 G 1 15 15 G G B . n B 2 2 G 2 16 16 G G B . n B 2 3 U 3 17 17 U U B . n B 2 4 A 4 18 18 A A B . n B 2 5 C 5 19 19 C C B . n B 2 6 U 6 20 20 U U B . n B 2 7 G 7 21 21 G G B . n B 2 8 C 8 22 22 C C B . n B 2 9 G 9 23 23 G G B . n B 2 10 XMP 10 24 24 XMP XAM B . n B 2 11 U 11 25 25 U U B . n B 2 12 A 12 26 26 A A B . n B 2 13 C 13 27 27 C C B . n B 2 14 C 14 28 28 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 101 27 HOH HOH A . C 3 HOH 2 102 18 HOH HOH A . C 3 HOH 3 103 56 HOH HOH A . C 3 HOH 4 104 13 HOH HOH A . C 3 HOH 5 105 7 HOH HOH A . C 3 HOH 6 106 5 HOH HOH A . C 3 HOH 7 107 71 HOH HOH A . C 3 HOH 8 108 28 HOH HOH A . C 3 HOH 9 109 15 HOH HOH A . C 3 HOH 10 110 136 HOH HOH A . C 3 HOH 11 111 62 HOH HOH A . C 3 HOH 12 112 35 HOH HOH A . C 3 HOH 13 113 63 HOH HOH A . C 3 HOH 14 114 125 HOH HOH A . C 3 HOH 15 115 96 HOH HOH A . C 3 HOH 16 116 128 HOH HOH A . C 3 HOH 17 117 25 HOH HOH A . C 3 HOH 18 118 76 HOH HOH A . C 3 HOH 19 119 20 HOH HOH A . C 3 HOH 20 120 24 HOH HOH A . C 3 HOH 21 121 4 HOH HOH A . C 3 HOH 22 122 103 HOH HOH A . C 3 HOH 23 123 49 HOH HOH A . C 3 HOH 24 124 86 HOH HOH A . C 3 HOH 25 125 12 HOH HOH A . C 3 HOH 26 126 43 HOH HOH A . C 3 HOH 27 127 123 HOH HOH A . C 3 HOH 28 128 29 HOH HOH A . C 3 HOH 29 129 97 HOH HOH A . C 3 HOH 30 130 11 HOH HOH A . C 3 HOH 31 131 41 HOH HOH A . C 3 HOH 32 132 53 HOH HOH A . C 3 HOH 33 133 40 HOH HOH A . C 3 HOH 34 134 50 HOH HOH A . C 3 HOH 35 135 33 HOH HOH A . C 3 HOH 36 136 14 HOH HOH A . C 3 HOH 37 137 82 HOH HOH A . C 3 HOH 38 138 137 HOH HOH A . C 3 HOH 39 139 85 HOH HOH A . C 3 HOH 40 140 52 HOH HOH A . C 3 HOH 41 141 78 HOH HOH A . C 3 HOH 42 142 138 HOH HOH A . C 3 HOH 43 143 80 HOH HOH A . C 3 HOH 44 144 105 HOH HOH A . C 3 HOH 45 145 116 HOH HOH A . C 3 HOH 46 146 98 HOH HOH A . C 3 HOH 47 147 38 HOH HOH A . C 3 HOH 48 148 58 HOH HOH A . C 3 HOH 49 149 142 HOH HOH A . C 3 HOH 50 150 73 HOH HOH A . C 3 HOH 51 151 88 HOH HOH A . C 3 HOH 52 152 74 HOH HOH A . C 3 HOH 53 153 109 HOH HOH A . D 3 HOH 1 101 130 HOH HOH B . D 3 HOH 2 102 57 HOH HOH B . D 3 HOH 3 103 72 HOH HOH B . D 3 HOH 4 104 107 HOH HOH B . D 3 HOH 5 105 124 HOH HOH B . D 3 HOH 6 106 39 HOH HOH B . D 3 HOH 7 107 21 HOH HOH B . D 3 HOH 8 108 8 HOH HOH B . D 3 HOH 9 109 42 HOH HOH B . D 3 HOH 10 110 45 HOH HOH B . D 3 HOH 11 111 47 HOH HOH B . D 3 HOH 12 112 9 HOH HOH B . D 3 HOH 13 113 30 HOH HOH B . D 3 HOH 14 114 51 HOH HOH B . D 3 HOH 15 115 75 HOH HOH B . D 3 HOH 16 116 2 HOH HOH B . D 3 HOH 17 117 17 HOH HOH B . D 3 HOH 18 118 139 HOH HOH B . D 3 HOH 19 119 55 HOH HOH B . D 3 HOH 20 120 120 HOH HOH B . D 3 HOH 21 121 32 HOH HOH B . D 3 HOH 22 122 140 HOH HOH B . D 3 HOH 23 123 91 HOH HOH B . D 3 HOH 24 124 34 HOH HOH B . D 3 HOH 25 125 48 HOH HOH B . D 3 HOH 26 126 6 HOH HOH B . D 3 HOH 27 127 36 HOH HOH B . D 3 HOH 28 128 16 HOH HOH B . D 3 HOH 29 129 26 HOH HOH B . D 3 HOH 30 130 111 HOH HOH B . D 3 HOH 31 131 3 HOH HOH B . D 3 HOH 32 132 10 HOH HOH B . D 3 HOH 33 133 106 HOH HOH B . D 3 HOH 34 134 1 HOH HOH B . D 3 HOH 35 135 37 HOH HOH B . D 3 HOH 36 136 141 HOH HOH B . D 3 HOH 37 137 31 HOH HOH B . D 3 HOH 38 138 68 HOH HOH B . D 3 HOH 39 139 77 HOH HOH B . D 3 HOH 40 140 22 HOH HOH B . D 3 HOH 41 141 46 HOH HOH B . D 3 HOH 42 142 19 HOH HOH B . D 3 HOH 43 143 61 HOH HOH B . D 3 HOH 44 144 44 HOH HOH B . D 3 HOH 45 145 89 HOH HOH B . D 3 HOH 46 146 100 HOH HOH B . D 3 HOH 47 147 119 HOH HOH B . D 3 HOH 48 148 66 HOH HOH B . D 3 HOH 49 149 110 HOH HOH B . D 3 HOH 50 150 131 HOH HOH B . D 3 HOH 51 151 70 HOH HOH B . D 3 HOH 52 152 135 HOH HOH B . D 3 HOH 53 153 65 HOH HOH B . D 3 HOH 54 154 59 HOH HOH B . D 3 HOH 55 155 60 HOH HOH B . D 3 HOH 56 156 104 HOH HOH B . D 3 HOH 57 157 117 HOH HOH B . D 3 HOH 58 158 115 HOH HOH B . D 3 HOH 59 159 121 HOH HOH B . D 3 HOH 60 160 95 HOH HOH B . D 3 HOH 61 161 90 HOH HOH B . D 3 HOH 62 162 143 HOH HOH B . D 3 HOH 63 163 99 HOH HOH B . D 3 HOH 64 164 129 HOH HOH B . D 3 HOH 65 165 94 HOH HOH B . D 3 HOH 66 166 118 HOH HOH B . D 3 HOH 67 167 23 HOH HOH B . D 3 HOH 68 168 126 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19_4092 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19_4092 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 7QTN _cell.details ? _cell.formula_units_Z ? _cell.length_a 44.880 _cell.length_a_esd ? _cell.length_b 44.880 _cell.length_b_esd ? _cell.length_c 149.700 _cell.length_c_esd ? _cell.volume 261130.825 _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QTN _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall 'P 6c 2c' _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7QTN _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.33 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 47.29 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Magnesium sulfate, TRIS HCl, Ammonium sulfate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 2M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-12-13 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SLS BEAMLINE X06DA' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X06DA _diffrn_source.pdbx_synchrotron_site SLS # _reflns.B_iso_Wilson_estimate 18.79 _reflns.entry_id 7QTN _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.2 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 1894942 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 20 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 32.3 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.00 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.20 _reflns_shell.d_res_low 1.23 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 68877 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.2 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 27.41 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7QTN _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.20 _refine.ls_d_res_low 38.87 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 28981 _refine.ls_number_reflns_R_free 1449 _refine.ls_number_reflns_R_work 27532 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.81 _refine.ls_percent_reflns_R_free 5.00 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1838 _refine.ls_R_factor_R_free 0.2089 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1825 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 433D _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 0.9000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.5000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 23.1576 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2268 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.20 _refine_hist.d_res_low 38.87 _refine_hist.number_atoms_solvent 121 _refine_hist.number_atoms_total 713 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 592 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0079 ? 660 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.0985 ? 1026 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0453 ? 135 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0132 ? 28 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 6.7511 ? 303 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.20 1.24 . . 141 2687 100.00 . . . 0.4197 . 0.3760 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.24 1.29 . . 141 2680 99.96 . . . 0.3530 . 0.3496 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.29 1.35 . . 142 2684 100.00 . . . 0.3334 . 0.2804 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.35 1.42 . . 142 2696 100.00 . . . 0.2850 . 0.2380 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.42 1.51 . . 143 2715 99.97 . . . 0.2352 . 0.1975 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.51 1.63 . . 142 2724 99.72 . . . 0.2158 . 0.1612 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.63 1.79 . . 144 2725 99.27 . . . 0.1792 . 0.1376 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.79 2.05 . . 146 2779 100.00 . . . 0.1645 . 0.1506 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.05 2.59 . . 148 2811 99.97 . . . 0.2018 . 0.1801 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.59 38.87 . . 160 3031 99.28 . . . 0.2021 . 0.1787 . . . . . . . . . . . # _struct.entry_id 7QTN _struct.title 'Duplex RNA containing Xanthosine-Cytosine base pairs' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7QTN _struct_keywords.text 'RNA, modified base' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 7QTN 7QTN ? 1 ? 1 2 PDB 7QTN 7QTN ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7QTN A 1 ? 14 ? 7QTN 1 ? 14 ? 1 14 2 2 7QTN B 1 ? 14 ? 7QTN 15 ? 28 ? 15 28 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A A 4 "O3'" ? ? ? 1_555 A RY 5 P ? ? A A 4 A RY 5 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale2 covale one ? A RY 5 "O3'" ? ? ? 1_555 A U 6 P ? ? A RY 5 A U 6 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale3 covale both ? A G 9 "O3'" ? ? ? 1_555 A HYJ 10 P ? ? A G 9 A HYJ 10 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale4 covale one ? A HYJ 10 "O3'" ? ? ? 1_555 A U 11 P ? ? A HYJ 10 A U 11 1_555 ? ? ? ? ? ? ? 1.619 ? ? covale5 covale one ? B G 9 "O3'" ? ? ? 1_555 B XMP 10 P ? ? B G 23 B XMP 24 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale6 covale one ? B XMP 10 "O3'" ? ? ? 1_555 B U 11 P ? ? B XMP 24 B U 25 1_555 ? ? ? ? ? ? ? 1.607 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 14 N3 ? ? A G 1 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 14 O2 ? ? A G 1 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 14 N4 ? ? A G 1 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 13 N3 ? ? A G 2 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 13 O2 ? ? A G 2 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 13 N4 ? ? A G 2 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 N3 ? ? ? 1_555 B A 12 N1 ? ? A U 3 B A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 3 O4 ? ? ? 1_555 B A 12 N6 ? ? A U 3 B A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 4 N1 ? ? ? 1_555 B U 11 N3 ? ? A A 4 B U 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N6 ? ? ? 1_555 B U 11 O4 ? ? A A 4 B U 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 6 N3 ? ? ? 1_555 B G 9 O6 ? ? A U 6 B G 23 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog12 hydrog ? ? A U 6 O2 ? ? ? 1_555 B G 9 N1 ? ? A U 6 B G 23 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog13 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 8 N3 ? ? A G 7 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 8 O2 ? ? A G 7 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 8 N4 ? ? A G 7 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 7 N1 ? ? A C 8 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 7 O6 ? ? A C 8 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 7 N2 ? ? A C 8 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 9 N1 ? ? ? 1_555 B U 6 O2 ? ? A G 9 B U 20 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog20 hydrog ? ? A G 9 O6 ? ? ? 1_555 B U 6 N3 ? ? A G 9 B U 20 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog21 hydrog ? ? A HYJ 10 O6 ? ? ? 1_555 B C 5 N4 ? ? A HYJ 10 B C 19 1_555 ? ? ? ? ? ? 'HYJ-C MISPAIR' ? ? ? hydrog22 hydrog ? ? A U 11 N3 ? ? ? 1_555 B A 4 N1 ? ? A U 11 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 11 O4 ? ? ? 1_555 B A 4 N6 ? ? A U 11 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A A 12 N1 ? ? ? 1_555 B U 3 N3 ? ? A A 12 B U 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A A 12 N6 ? ? ? 1_555 B U 3 O4 ? ? A A 12 B U 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 13 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 13 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 13 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 13 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 13 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 13 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 14 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 14 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 14 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 14 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 14 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 14 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 119 ? C HOH . 2 1 A HOH 120 ? C HOH . 3 1 A HOH 125 ? C HOH . 4 1 A HOH 140 ? C HOH . 5 1 A HOH 141 ? C HOH . 6 1 A HOH 148 ? C HOH . 7 1 A HOH 149 ? C HOH . 8 1 B HOH 131 ? D HOH . 9 1 B HOH 134 ? D HOH . 10 1 B HOH 159 ? D HOH . 11 1 B HOH 166 ? D HOH . 12 1 B HOH 167 ? D HOH . # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x-y,x,z+1/2 3 y,-x+y,z+1/2 4 -y,x-y,z 5 -x+y,-x,z 6 x-y,-y,-z 7 -x,-x+y,-z 8 -x,-y,z+1/2 9 y,x,-z 10 -y,-x,-z+1/2 11 -x+y,y,-z+1/2 12 x,x-y,-z+1/2 # _pdbx_entry_details.entry_id 7QTN _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id B _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 168 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 5.95 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 HYJ N9 N Y N 114 HYJ C4 C Y N 115 HYJ N3 N N N 116 HYJ C2 C N N 117 HYJ O2 O N N 118 HYJ N1 N N N 119 HYJ C6 C N N 120 HYJ O6 O N N 121 HYJ C5 C Y N 122 HYJ N7 N Y N 123 HYJ C8 C Y N 124 HYJ "C1'" C N R 125 HYJ "C2'" C N R 126 HYJ "C3'" C N S 127 HYJ "C4'" C N R 128 HYJ "C5'" C N N 129 HYJ "O2'" O N N 130 HYJ "O3'" O N N 131 HYJ "O4'" O N N 132 HYJ "O5'" O N N 133 HYJ OP1 O N N 134 HYJ OP2 O N N 135 HYJ P P N N 136 HYJ HO2 H N N 137 HYJ H1 H N N 138 HYJ H8 H N N 139 HYJ "H1'" H N N 140 HYJ "H2'" H N N 141 HYJ "H3'" H N N 142 HYJ "H4'" H N N 143 HYJ "H5'2" H N N 144 HYJ "H5'1" H N N 145 HYJ "HO2'" H N N 146 HYJ H2 H N N 147 HYJ H3 H N N 148 HYJ OP3 O N N 149 HYJ H6 H N N 150 RY P P N N 151 RY "C5'" C N N 152 RY "O5'" O N N 153 RY "C4'" C N R 154 RY "O4'" O N N 155 RY "C3'" C N S 156 RY "O3'" O N N 157 RY "C2'" C N R 158 RY "O2'" O N N 159 RY "C1'" C N R 160 RY N1 N N N 161 RY C2 C N N 162 RY O2 O N N 163 RY N3 N N N 164 RY C4 C N N 165 RY N4 N N N 166 RY C5 C N N 167 RY C6 C N N 168 RY OP1 O N N 169 RY OP2 O N N 170 RY OP3 O N N 171 RY "H5''" H N N 172 RY "H5'" H N N 173 RY "H4'" H N N 174 RY "H3'" H N N 175 RY H1 H N N 176 RY "H2'" H N N 177 RY "HO2'" H N N 178 RY "H1'" H N N 179 RY H3 H N N 180 RY H41 H N N 181 RY H42 H N N 182 RY H5 H N N 183 RY H6 H N N 184 RY H2 H N N 185 RY H4 H N N 186 RY H7 H N N 187 U OP3 O N N 188 U P P N N 189 U OP1 O N N 190 U OP2 O N N 191 U "O5'" O N N 192 U "C5'" C N N 193 U "C4'" C N R 194 U "O4'" O N N 195 U "C3'" C N S 196 U "O3'" O N N 197 U "C2'" C N R 198 U "O2'" O N N 199 U "C1'" C N R 200 U N1 N N N 201 U C2 C N N 202 U O2 O N N 203 U N3 N N N 204 U C4 C N N 205 U O4 O N N 206 U C5 C N N 207 U C6 C N N 208 U HOP3 H N N 209 U HOP2 H N N 210 U "H5'" H N N 211 U "H5''" H N N 212 U "H4'" H N N 213 U "H3'" H N N 214 U "HO3'" H N N 215 U "H2'" H N N 216 U "HO2'" H N N 217 U "H1'" H N N 218 U H3 H N N 219 U H5 H N N 220 U H6 H N N 221 XMP P P N N 222 XMP O1P O N N 223 XMP O2P O N N 224 XMP "O5'" O N N 225 XMP O3P O N N 226 XMP "C5'" C N N 227 XMP "C4'" C N R 228 XMP "O4'" O N N 229 XMP "C1'" C N R 230 XMP N9 N Y N 231 XMP C4 C Y N 232 XMP N3 N N N 233 XMP N1 N N N 234 XMP C2 C N N 235 XMP O2 O N N 236 XMP C6 C N N 237 XMP O6 O N N 238 XMP C5 C Y N 239 XMP N7 N Y N 240 XMP C8 C Y N 241 XMP "C2'" C N R 242 XMP "O2'" O N N 243 XMP "C3'" C N S 244 XMP "O3'" O N N 245 XMP HOP1 H N N 246 XMP HOP2 H N N 247 XMP "H5'2" H N N 248 XMP "H5'1" H N N 249 XMP "H4'" H N N 250 XMP "H1'" H N N 251 XMP H3 H N N 252 XMP H1 H N N 253 XMP H7 H N N 254 XMP H8 H N N 255 XMP "H2'" H N N 256 XMP H2O1 H N N 257 XMP "H3'" H N N 258 XMP H3O1 H N N 259 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 HYJ O2 C2 sing N N 118 HYJ C2 N1 sing N N 119 HYJ C2 N3 doub N N 120 HYJ N1 C6 sing N N 121 HYJ N3 C4 sing N N 122 HYJ C6 O6 doub N N 123 HYJ C6 C5 sing N N 124 HYJ C4 C5 doub Y N 125 HYJ C4 N9 sing Y N 126 HYJ C5 N7 sing Y N 127 HYJ "C1'" N9 sing N N 128 HYJ "C1'" "O4'" sing N N 129 HYJ "C1'" "C2'" sing N N 130 HYJ N9 C8 sing Y N 131 HYJ "O4'" "C4'" sing N N 132 HYJ N7 C8 doub Y N 133 HYJ "O2'" "C2'" sing N N 134 HYJ "C2'" "C3'" sing N N 135 HYJ "C4'" "C5'" sing N N 136 HYJ "C4'" "C3'" sing N N 137 HYJ "C5'" "O5'" sing N N 138 HYJ "O5'" P sing N N 139 HYJ "C3'" "O3'" sing N N 140 HYJ P OP2 doub N N 141 HYJ P OP1 sing N N 142 HYJ O2 HO2 sing N N 143 HYJ N1 H1 sing N N 144 HYJ C8 H8 sing N N 145 HYJ "C1'" "H1'" sing N N 146 HYJ "C2'" "H2'" sing N N 147 HYJ "C3'" "H3'" sing N N 148 HYJ "C4'" "H4'" sing N N 149 HYJ "C5'" "H5'2" sing N N 150 HYJ "C5'" "H5'1" sing N N 151 HYJ "O2'" "HO2'" sing N N 152 HYJ "O3'" H2 sing N N 153 HYJ OP1 H3 sing N N 154 HYJ P OP3 sing N N 155 HYJ OP3 H6 sing N N 156 RY OP1 P doub N N 157 RY O2 C2 doub N N 158 RY "O3'" "C3'" sing N N 159 RY "O2'" "C2'" sing N N 160 RY P OP2 sing N N 161 RY P "O5'" sing N N 162 RY C2 N3 sing N N 163 RY C2 N1 sing N N 164 RY "C3'" "C4'" sing N N 165 RY "C3'" "C2'" sing N N 166 RY "C4'" "O4'" sing N N 167 RY "C4'" "C5'" sing N N 168 RY "C1'" "C2'" sing N N 169 RY "C1'" "O4'" sing N N 170 RY "C1'" N1 sing N N 171 RY N3 C4 sing N N 172 RY N1 C6 sing N N 173 RY "C5'" "O5'" sing N N 174 RY C4 N4 sing N N 175 RY C4 C5 doub N N 176 RY C6 C5 sing N N 177 RY P OP3 sing N N 178 RY "C5'" "H5''" sing N N 179 RY "C5'" "H5'" sing N N 180 RY "C4'" "H4'" sing N N 181 RY "C3'" "H3'" sing N N 182 RY "O3'" H1 sing N N 183 RY "C2'" "H2'" sing N N 184 RY "O2'" "HO2'" sing N N 185 RY "C1'" "H1'" sing N N 186 RY N3 H3 sing N N 187 RY N4 H41 sing N N 188 RY N4 H42 sing N N 189 RY C5 H5 sing N N 190 RY C6 H6 sing N N 191 RY C6 H2 sing N N 192 RY OP2 H4 sing N N 193 RY OP3 H7 sing N N 194 U OP3 P sing N N 195 U OP3 HOP3 sing N N 196 U P OP1 doub N N 197 U P OP2 sing N N 198 U P "O5'" sing N N 199 U OP2 HOP2 sing N N 200 U "O5'" "C5'" sing N N 201 U "C5'" "C4'" sing N N 202 U "C5'" "H5'" sing N N 203 U "C5'" "H5''" sing N N 204 U "C4'" "O4'" sing N N 205 U "C4'" "C3'" sing N N 206 U "C4'" "H4'" sing N N 207 U "O4'" "C1'" sing N N 208 U "C3'" "O3'" sing N N 209 U "C3'" "C2'" sing N N 210 U "C3'" "H3'" sing N N 211 U "O3'" "HO3'" sing N N 212 U "C2'" "O2'" sing N N 213 U "C2'" "C1'" sing N N 214 U "C2'" "H2'" sing N N 215 U "O2'" "HO2'" sing N N 216 U "C1'" N1 sing N N 217 U "C1'" "H1'" sing N N 218 U N1 C2 sing N N 219 U N1 C6 sing N N 220 U C2 O2 doub N N 221 U C2 N3 sing N N 222 U N3 C4 sing N N 223 U N3 H3 sing N N 224 U C4 O4 doub N N 225 U C4 C5 sing N N 226 U C5 C6 doub N N 227 U C5 H5 sing N N 228 U C6 H6 sing N N 229 XMP P O1P sing N N 230 XMP P O2P sing N N 231 XMP P "O5'" sing N N 232 XMP P O3P doub N N 233 XMP O1P HOP1 sing N N 234 XMP O2P HOP2 sing N N 235 XMP "O5'" "C5'" sing N N 236 XMP "C5'" "C4'" sing N N 237 XMP "C5'" "H5'2" sing N N 238 XMP "C5'" "H5'1" sing N N 239 XMP "C4'" "O4'" sing N N 240 XMP "C4'" "C3'" sing N N 241 XMP "C4'" "H4'" sing N N 242 XMP "O4'" "C1'" sing N N 243 XMP "C1'" N9 sing N N 244 XMP "C1'" "C2'" sing N N 245 XMP "C1'" "H1'" sing N N 246 XMP N9 C4 sing Y N 247 XMP N9 C8 sing Y N 248 XMP C4 N3 sing N N 249 XMP C4 C5 doub Y N 250 XMP N3 C2 sing N N 251 XMP N3 H3 sing N N 252 XMP N1 C2 sing N N 253 XMP N1 C6 sing N N 254 XMP N1 H1 sing N N 255 XMP C2 O2 doub N N 256 XMP C6 O6 doub N N 257 XMP C6 C5 sing N N 258 XMP C5 N7 sing Y N 259 XMP N7 C8 doub Y N 260 XMP N7 H7 sing N N 261 XMP C8 H8 sing N N 262 XMP "C2'" "O2'" sing N N 263 XMP "C2'" "C3'" sing N N 264 XMP "C2'" "H2'" sing N N 265 XMP "O2'" H2O1 sing N N 266 XMP "C3'" "O3'" sing N N 267 XMP "C3'" "H3'" sing N N 268 XMP "O3'" H3O1 sing N N 269 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7QTN 'double helix' 7QTN 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 14 1_555 -0.342 -0.138 0.078 -5.947 -10.907 1.276 1 A_G1:C28_B A 1 ? B 28 ? 19 1 1 A G 2 1_555 B C 13 1_555 -0.276 -0.176 -0.190 -10.968 -15.962 -0.722 2 A_G2:C27_B A 2 ? B 27 ? 19 1 1 A U 3 1_555 B A 12 1_555 -0.113 -0.121 0.156 -3.777 -11.680 0.679 3 A_U3:A26_B A 3 ? B 26 ? 20 1 1 A A 4 1_555 B U 11 1_555 0.033 -0.107 0.156 2.775 -12.581 1.155 4 A_A4:U25_B A 4 ? B 25 ? 20 1 1 A U 6 1_555 B G 9 1_555 2.298 -0.573 -0.022 -0.108 -14.859 0.592 5 A_U6:G23_B A 6 ? B 23 ? 28 1 1 A G 7 1_555 B C 8 1_555 -0.223 -0.134 0.085 -3.226 -4.878 -1.992 6 A_G7:C22_B A 7 ? B 22 ? 19 1 1 A C 8 1_555 B G 7 1_555 0.376 -0.172 0.009 2.424 -5.424 -1.917 7 A_C8:G21_B A 8 ? B 21 ? 19 1 1 A G 9 1_555 B U 6 1_555 -2.262 -0.514 -0.150 -4.043 -12.956 0.551 8 A_G9:U20_B A 9 ? B 20 ? 28 1 1 A HYJ 10 1_555 B C 5 1_555 -0.426 -0.194 -0.141 -8.398 -14.256 -5.619 9 A_HYJ10:C19_B A 10 ? B 19 ? ? 1 1 A U 11 1_555 B A 4 1_555 -0.007 -0.075 0.207 -4.158 -13.922 4.613 10 A_U11:A18_B A 11 ? B 18 ? 20 1 1 A A 12 1_555 B U 3 1_555 0.095 -0.077 -0.032 -2.097 -8.901 2.237 11 A_A12:U17_B A 12 ? B 17 ? 20 1 1 A C 13 1_555 B G 2 1_555 0.169 -0.084 -0.005 3.891 -11.298 1.316 12 A_C13:G16_B A 13 ? B 16 ? 19 1 1 A C 14 1_555 B G 1 1_555 0.328 -0.067 -0.136 9.302 -0.904 2.064 13 A_C14:G15_B A 14 ? B 15 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 14 1_555 A G 2 1_555 B C 13 1_555 -0.871 -1.690 3.349 -0.410 7.256 34.497 -3.842 1.379 2.954 12.069 0.683 35.231 1 AA_G1G2:C27C28_BB A 1 ? B 28 ? A 2 ? B 27 ? 1 A G 2 1_555 B C 13 1_555 A U 3 1_555 B A 12 1_555 -0.036 -0.964 3.124 -2.755 7.572 31.294 -2.973 -0.385 2.813 13.753 5.004 32.290 2 AA_G2U3:A26C27_BB A 2 ? B 27 ? A 3 ? B 26 ? 1 A U 3 1_555 B A 12 1_555 A A 4 1_555 B U 11 1_555 0.522 -1.345 3.008 -0.002 11.003 30.481 -4.068 -0.936 2.391 20.122 0.005 32.362 3 AA_U3A4:U25A26_BB A 3 ? B 26 ? A 4 ? B 25 ? 1 A A 4 1_555 B U 11 1_555 A U 6 1_555 B G 9 1_555 0.191 -3.133 6.352 3.001 11.496 75.265 -3.186 0.012 5.898 9.358 -2.442 76.060 4 AA_A4U6:G23U25_BB A 4 ? B 25 ? A 6 ? B 23 ? 1 A U 6 1_555 B G 9 1_555 A G 7 1_555 B C 8 1_555 -1.712 -1.950 3.197 -0.891 11.616 19.846 -8.295 4.036 1.856 30.535 2.343 22.983 5 AA_U6G7:C22G23_BB A 6 ? B 23 ? A 7 ? B 22 ? 1 A G 7 1_555 B C 8 1_555 A C 8 1_555 B G 7 1_555 0.333 -1.324 3.246 1.157 7.384 31.518 -3.613 -0.404 2.880 13.360 -2.093 32.370 6 AA_G7C8:G21C22_BB A 7 ? B 22 ? A 8 ? B 21 ? 1 A C 8 1_555 B G 7 1_555 A G 9 1_555 B U 6 1_555 1.818 -2.326 3.324 3.639 9.642 19.235 -9.560 -3.522 2.219 26.533 -10.014 21.799 7 AA_C8G9:U20G21_BB A 8 ? B 21 ? A 9 ? B 20 ? 1 A G 9 1_555 B U 6 1_555 A HYJ 10 1_555 B C 5 1_555 -0.777 -1.931 3.386 -1.883 3.257 38.906 -3.285 0.931 3.253 4.876 2.819 39.081 8 AA_G9HYJ10:C19U20_BB A 9 ? B 20 ? A 10 ? B 19 ? 1 A HYJ 10 1_555 B C 5 1_555 A U 11 1_555 B A 4 1_555 0.701 -1.820 3.155 -0.450 3.819 31.066 -4.044 -1.378 2.906 7.096 0.837 31.297 9 AA_HYJ10U11:A18C19_BB A 10 ? B 19 ? A 11 ? B 18 ? 1 A U 11 1_555 B A 4 1_555 A A 12 1_555 B U 3 1_555 -0.438 -1.444 3.102 0.744 11.722 32.385 -4.041 0.843 2.438 20.206 -1.282 34.395 10 AA_U11A12:U17A18_BB A 11 ? B 18 ? A 12 ? B 17 ? 1 A A 12 1_555 B U 3 1_555 A C 13 1_555 B G 2 1_555 0.448 -1.715 3.110 1.456 5.397 29.217 -4.368 -0.597 2.774 10.577 -2.854 29.735 11 AA_A12C13:G16U17_BB A 12 ? B 17 ? A 13 ? B 16 ? 1 A C 13 1_555 B G 2 1_555 A C 14 1_555 B G 1 1_555 0.108 -2.183 3.197 0.694 3.564 27.803 -5.294 -0.070 2.902 7.376 -1.436 28.034 12 AA_C13C14:G15G16_BB A 13 ? B 16 ? A 14 ? B 15 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Austrian Science Fund' Austria P31691 1 'Austrian Science Fund' Austria F8011-B 2 'Austrian Science Fund' Austria P32773 3 'Austrian Science Fund' Austria P30087 4 'Austrian Research Promotion Agency' Austria 'West Austrian BioNMR 858017' 5 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 XMP ? ? XMP ? ? 'SUBJECT OF INVESTIGATION' ? 2 HYJ ? ? HYJ ? ? 'SUBJECT OF INVESTIGATION' ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 433D _pdbx_initial_refinement_model.details ? # _space_group.name_H-M_alt 'P 63 2 2' _space_group.name_Hall 'P 6c 2c' _space_group.IT_number 182 _space_group.crystal_system hexagonal _space_group.id 1 # _atom_sites.entry_id 7QTN _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.022282 _atom_sites.fract_transf_matrix[1][2] 0.012864 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025729 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006680 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ # loop_ #